RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 A0A0U1RRA0 63 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 A0A1B0GV90 55 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 K7ERJ3 54 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 TAX1BP3O14907 124 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 SMIM13P0DJ93 91 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 MUSTN1Q8IVN3 82 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 HIST1H4GQ99525 98 aa5.96□□□□□ -1.46
LIMCH1-221ENST00000515785 NPC2P61916 151 aa5.95□□□□□ -1.46
LIMCH1-221ENST00000515785 LINC00483Q53H64 154 aa5.95□□□□□ -1.46
LIMCH1-221ENST00000515785 SPANXDQ9BXN6 97 aa5.95□□□□□ -1.46
LIMCH1-221ENST00000515785 SPANXCQ9NY87 97 aa5.95□□□□□ -1.46
LIMCH1-221ENST00000515785 ERG28Q9UKR5 140 aa5.95□□□□□ -1.46
LIMCH1-221ENST00000515785 TIMM17BO60830 172 aa5.94□□□□□ -1.46
LIMCH1-221ENST00000515785 A0A1B0GWB2 263 aa5.93□□□□□ -1.46
LIMCH1-221ENST00000515785 NAA38Q9BRA0 125 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-221ENST00000515785 ETDCA0A1B0GVM5 59 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 A4D1N5 150 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 ERC2-IT1O76042 136 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 CFC1P0CG37 223 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 HERV-K104P63124 156 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 COL5A1-AS1Q5SY13 56 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 Q6Q795 121 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 LINC00308Q8TCZ7 52 aa5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 NHP2Q9NX24 153 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 MACF1Q9UPN3 7388 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-221ENST00000515785 MEIG1Q5JSS6 88 aa5.91□□□□□ -1.46
LIMCH1-221ENST00000515785 C9orf153Q5TBE3 101 aa5.91□□□□□ -1.46
LIMCH1-221ENST00000515785 MIR7-3HGQ8N6C7 128 aa5.91□□□□□ -1.46
LIMCH1-221ENST00000515785 RAB37Q96AX2 223 aa5.91□□□□□ -1.46
LIMCH1-221ENST00000515785 PRYO14603 147 aa5.9□□□□□ -1.46
LIMCH1-221ENST00000515785 IGLV6-57P01721 117 aa5.89□□□□□ -1.47
LIMCH1-221ENST00000515785 LINC00158P58513 81 aa5.89□□□□□ -1.47
LIMCH1-221ENST00000515785 COX17Q14061 63 aa5.89□□□□□ -1.47
LIMCH1-221ENST00000515785 HRCT1Q6UXD1 115 aa5.89□□□□□ -1.47
LIMCH1-221ENST00000515785 NCR3O14931 201 aa5.88□□□□□ -1.47
LIMCH1-221ENST00000515785 A6NDN8 102 aa5.87□□□□□ -1.47
LIMCH1-221ENST00000515785 IFITM1P13164 125 aa5.87□□□□□ -1.47
LIMCH1-221ENST00000515785 SPRR1AP35321 89 aa5.87□□□□□ -1.47
LIMCH1-221ENST00000515785 KCNQ1DNQ9H478 68 aa5.87□□□□□ -1.47
LIMCH1-221ENST00000515785 LOC107984156A0A0G2JMH3 177 aa5.86□□□□□ -1.47
LIMCH1-221ENST00000515785 H3BUT2 72 aa5.86□□□□□ -1.47
LIMCH1-221ENST00000515785 ARL17AQ8IVW1 177 aa5.86□□□□□ -1.47
LIMCH1-221ENST00000515785 A0A0B4J2C4 111 aa5.85□□□□□ -1.47
LIMCH1-221ENST00000515785 B5MCH6 92 aa5.85□□□□□ -1.47
LIMCH1-221ENST00000515785 TRBV10-3A0A0K0K1G6 114 aa5.84□□□□□ -1.47
LIMCH1-221ENST00000515785 SFTA2Q6UW10 78 aa5.84□□□□□ -1.47
LIMCH1-221ENST00000515785 RPL37P61927 97 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-221ENST00000515785 Q9BRP9 147 aa5.83□□□□□ -1.48
LIMCH1-221ENST00000515785 LIMD2Q9BT23 127 aa5.83□□□□□ -1.48
LIMCH1-221ENST00000515785 PRO1854Q9UHT4 67 aa5.83□□□□□ -1.48
LIMCH1-221ENST00000515785 A0A1W2PPM0 123 aa5.82□□□□□ -1.48
LIMCH1-221ENST00000515785 H7C2G1 150 aa5.81□□□□□ -1.48
LIMCH1-221ENST00000515785 ST20-AS1Q8NBB2 130 aa5.8□□□□□ -1.48
LIMCH1-221ENST00000515785 TRIAP1O43715 76 aa5.79□□□□□ -1.48
LIMCH1-221ENST00000515785 K7EP34 96 aa5.78□□□□□ -1.48
LIMCH1-221ENST00000515785 NDUFC2O95298 119 aa5.78□□□□□ -1.48
LIMCH1-221ENST00000515785 VAMP3Q15836 100 aa5.78□□□□□ -1.48
LIMCH1-221ENST00000515785 TCL1BO95988 128 aa5.77□□□□□ -1.49
LIMCH1-221ENST00000515785 UBE2V1Q13404 147 aa5.77□□□□□ -1.49
LIMCH1-221ENST00000515785 Q6ZRX8 168 aa5.77□□□□□ -1.49
LIMCH1-221ENST00000515785 SMIM11BQ8TCY0 68 aa5.76□□□□□ -1.49
LIMCH1-221ENST00000515785 SPCS1Q9Y6A9 102 aa5.76□□□□□ -1.49
LIMCH1-221ENST00000515785 MT2AP02795 61 aa5.75□□□□□ -1.49
LIMCH1-221ENST00000515785 FABP2P12104 132 aa5.75□□□□□ -1.49
LIMCH1-221ENST00000515785 COPS9Q8WXC6 57 aa5.75□□□□□ -1.49
LIMCH1-221ENST00000515785 CLEC2BQ92478 149 aa5.75□□□□□ -1.49
LIMCH1-221ENST00000515785 FAM218AQ96MZ4 157 aa5.75□□□□□ -1.49
LIMCH1-221ENST00000515785 TRAV13-2A0A0B4J235 113 aa5.74□□□□□ -1.49
LIMCH1-221ENST00000515785 Q1RN00 199 aa5.74□□□□□ -1.49
LIMCH1-221ENST00000515785 PRO0461Q9UI25 63 aa5.74□□□□□ -1.49
LIMCH1-221ENST00000515785 PSMB2P49721 201 aa5.73□□□□□ -1.49
LIMCH1-221ENST00000515785 C1orf195Q5TG92 126 aa5.73□□□□□ -1.49
LIMCH1-221ENST00000515785 MTURNQ8N3F0 131 aa5.73□□□□□ -1.49
LIMCH1-221ENST00000515785 OR13C6PQ8NH95 151 aa5.73□□□□□ -1.49
LIMCH1-221ENST00000515785 TRBV10-2A0A0K0K1G8 114 aa5.72□□□□□ -1.49
LIMCH1-221ENST00000515785 H3BMG7 143 aa5.72□□□□□ -1.49
LIMCH1-221ENST00000515785 MT1FP04733 61 aa5.7□□□□□ -1.5
LIMCH1-221ENST00000515785 SCGB1C2P0DMR2 95 aa5.7□□□□□ -1.5
LIMCH1-221ENST00000515785 KRTAP6-3Q3LI67 103 aa5.7□□□□□ -1.5
LIMCH1-221ENST00000515785 LST1O00453 97 aa5.69□□□□□ -1.5
LIMCH1-221ENST00000515785 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
LIMCH1-221ENST00000515785 S100A7L2Q5SY68 101 aa5.69□□□□□ -1.5
LIMCH1-221ENST00000515785 LINC00846Q9NV44 126 aa5.69□□□□□ -1.5
LIMCH1-221ENST00000515785 LAMTOR3Q9UHA4 124 aa5.69□□□□□ -1.5
LIMCH1-221ENST00000515785 C6orf99Q4VX62 202 aa5.68□□□□□ -1.5
LIMCH1-221ENST00000515785 GTF2H5Q6ZYL4 71 aa5.68□□□□□ -1.5
LIMCH1-221ENST00000515785 NEBP20929 6669 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 TRBV20-1A0A075B6N2 111 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 TRAV23DV6A0A075B6W5 121 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 A0A0G2JQZ4 141 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 CD164Q04900 197 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 ATP11AUNQ6ZP68 121 aa5.67□□□□□ -1.5
LIMCH1-221ENST00000515785 SPRR1BP22528 89 aa5.66□□□□□ -1.5
LIMCH1-221ENST00000515785 SMIM29Q86T20 159 aa5.66□□□□□ -1.5
LIMCH1-221ENST00000515785 KRTAP3-1Q9BYR8 98 aa5.66□□□□□ -1.5
LIMCH1-221ENST00000515785 C9JAW5 83 aa5.65□□□□□ -1.5
LIMCH1-221ENST00000515785 ZNF73O43830 326 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-221ENST00000515785 ATXN8Q156A1 80 aa5.65□□□□□ -1.5
LIMCH1-221ENST00000515785 DEFB105AQ8NG35 78 aa5.65□□□□□ -1.5
LIMCH1-221ENST00000515785 COX6CP09669 75 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms