RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TAX1BP3O14907 124 aa17.32■□□□□ 0.36
LIMCH1-211ENST00000509638 SMIM29Q86T20 159 aa17.32■□□□□ 0.36
LIMCH1-211ENST00000509638 DNAL4O96015 105 aa17.32■□□□□ 0.36
LIMCH1-211ENST00000509638 H3BUT2 72 aa17.3■□□□□ 0.36
LIMCH1-211ENST00000509638 LST1O00453 97 aa17.3■□□□□ 0.36
LIMCH1-211ENST00000509638 OCIAD2Q56VL3 154 aa17.29■□□□□ 0.36
LIMCH1-211ENST00000509638 Q8NBF4 154 aa17.29■□□□□ 0.36
LIMCH1-211ENST00000509638 PPDPFLQ8WWR9 84 aa17.28■□□□□ 0.36
LIMCH1-211ENST00000509638 C9orf118A6NHY6 69 aa17.28■□□□□ 0.36
LIMCH1-211ENST00000509638 LINC00304Q8N9R0 145 aa17.27■□□□□ 0.35
LIMCH1-211ENST00000509638 COL5A1-AS1Q5SY13 56 aa17.26■□□□□ 0.35
LIMCH1-211ENST00000509638 LYRM7Q5U5X0 104 aa17.26■□□□□ 0.35
LIMCH1-211ENST00000509638 TRACP01848 142 aa17.25■□□□□ 0.35
LIMCH1-211ENST00000509638 TCL1BO95988 128 aa17.23■□□□□ 0.35
LIMCH1-211ENST00000509638 SSBP3-AS1Q7Z2R9 100 aa17.23■□□□□ 0.35
LIMCH1-211ENST00000509638 ORMDL1Q9P0S3 153 aa17.22■□□□□ 0.35
LIMCH1-211ENST00000509638 F8WEM9 126 aa17.21■□□□□ 0.35
LIMCH1-211ENST00000509638 ATXN8Q156A1 80 aa17.2■□□□□ 0.34
LIMCH1-211ENST00000509638 GHRHP01286 108 aa17.19■□□□□ 0.34
LIMCH1-211ENST00000509638 A0A1W2PPM0 123 aa17.19■□□□□ 0.34
LIMCH1-211ENST00000509638 FABP2P12104 132 aa17.17■□□□□ 0.34
LIMCH1-211ENST00000509638 TRBV20-1A0A075B6N2 111 aa17.14■□□□□ 0.33
LIMCH1-211ENST00000509638 C4orf48Q5BLP8 95 aa17.13■□□□□ 0.33
LIMCH1-211ENST00000509638 SPAG11AQ6PDA7 123 aa17.12■□□□□ 0.33
LIMCH1-211ENST00000509638 H3BQ85 93 aa17.11■□□□□ 0.33
LIMCH1-211ENST00000509638 NDUFV3P56181 108 aaKnown RBP17.11■□□□□ 0.33
LIMCH1-211ENST00000509638 TMEM256-PLSCR3K7ERE1 68 aa17.09■□□□□ 0.33
LIMCH1-211ENST00000509638 IGLV8-61A0A075B6I0 122 aa17.08■□□□□ 0.32
LIMCH1-211ENST00000509638 A0A0G2JQZ4 141 aa17.07■□□□□ 0.32
LIMCH1-211ENST00000509638 SPINK1P00995 79 aa17.05■□□□□ 0.32
LIMCH1-211ENST00000509638 Q6JHZ5 121 aa17.03■□□□□ 0.32
LIMCH1-211ENST00000509638 HRCT1Q6UXD1 115 aa17.03■□□□□ 0.32
LIMCH1-211ENST00000509638 H3BMG7 143 aa17.02■□□□□ 0.31
LIMCH1-211ENST00000509638 BAALC-AS2P0C853 105 aa17.02■□□□□ 0.31
LIMCH1-211ENST00000509638 IGFL1Q6UW32 110 aa17.02■□□□□ 0.31
LIMCH1-211ENST00000509638 SPCS1Q9Y6A9 102 aa17.02■□□□□ 0.31
LIMCH1-211ENST00000509638 A0A1B0GV72 72 aa17■□□□□ 0.31
LIMCH1-211ENST00000509638 UBE2V1Q13404 147 aa17■□□□□ 0.31
LIMCH1-211ENST00000509638 C9JAW5 83 aa16.99■□□□□ 0.31
LIMCH1-211ENST00000509638 RPS29P62273 56 aaKnown RBP16.97■□□□□ 0.31
LIMCH1-211ENST00000509638 CD164Q04900 197 aa16.97■□□□□ 0.31
LIMCH1-211ENST00000509638 ANKRD29Q8N6D5 301 aa16.96■□□□□ 0.31
LIMCH1-211ENST00000509638 HMCN2Q8NDA2 5059 aa16.91■□□□□ 0.3
LIMCH1-211ENST00000509638 MTURNQ8N3F0 131 aa16.91■□□□□ 0.3
LIMCH1-211ENST00000509638 RETNLBQ9BQ08 111 aa16.91■□□□□ 0.3
LIMCH1-211ENST00000509638 LIMD2Q9BT23 127 aa16.89■□□□□ 0.29
LIMCH1-211ENST00000509638 K7EP34 96 aa16.88■□□□□ 0.29
LIMCH1-211ENST00000509638 H3BT86 120 aa16.85■□□□□ 0.29
LIMCH1-211ENST00000509638 RBM3P98179 157 aaKnown RBP16.82■□□□□ 0.28
LIMCH1-211ENST00000509638 PRR4Q16378 134 aa16.82■□□□□ 0.28
LIMCH1-211ENST00000509638 TRBV7-7A0A0K0K1E9 115 aa16.81■□□□□ 0.28
LIMCH1-211ENST00000509638 Q6Q795 121 aa16.79■□□□□ 0.28
LIMCH1-211ENST00000509638 TEN1Q86WV5 123 aa16.79■□□□□ 0.28
LIMCH1-211ENST00000509638 TRBV7-4A0A0J9YYF1 115 aa16.78■□□□□ 0.28
LIMCH1-211ENST00000509638 Q5XG85 94 aa16.77■□□□□ 0.28
LIMCH1-211ENST00000509638 GTF2H5Q6ZYL4 71 aa16.77■□□□□ 0.28
LIMCH1-211ENST00000509638 DSCR8Q96T75 97 aa16.77■□□□□ 0.28
LIMCH1-211ENST00000509638 JMJD7-PLA2G4BH0Y9G9 81 aa16.77■□□□□ 0.27
LIMCH1-211ENST00000509638 A0A1W2PNM2 257 aa16.76■□□□□ 0.27
LIMCH1-211ENST00000509638 CCKP06307 115 aa16.72■□□□□ 0.27
LIMCH1-211ENST00000509638 PRO0461Q9UI25 63 aa16.72■□□□□ 0.27
LIMCH1-211ENST00000509638 SMCPP49901 116 aaPredicted RBP16.71■□□□□ 0.27
LIMCH1-211ENST00000509638 OBSCN-AS1Q96MR7 158 aa16.7■□□□□ 0.26
LIMCH1-211ENST00000509638 FP248Q71RG6 208 aaPredicted RBP16.69■□□□□ 0.26
LIMCH1-211ENST00000509638 VPS25Q9BRG1 176 aa16.68■□□□□ 0.26
LIMCH1-211ENST00000509638 C14orf132Q9NPU4 83 aa16.68■□□□□ 0.26
LIMCH1-211ENST00000509638 A0A087WSZ3 146 aa16.68■□□□□ 0.26
LIMCH1-211ENST00000509638 IGLV7-46A0A075B6I9 117 aa16.65■□□□□ 0.26
LIMCH1-211ENST00000509638 LOC110117498A0A087WWA1 95 aa16.64■□□□□ 0.25
LIMCH1-211ENST00000509638 SS18L2Q9UHA2 77 aa16.64■□□□□ 0.25
LIMCH1-211ENST00000509638 Q6ZQT0 140 aa16.64■□□□□ 0.25
LIMCH1-211ENST00000509638 ASB16-AS1Q495Z4 193 aa16.63■□□□□ 0.25
LIMCH1-211ENST00000509638 C1orf195Q5TG92 126 aa16.63■□□□□ 0.25
LIMCH1-211ENST00000509638 LPAP08519 4548 aa16.61■□□□□ 0.25
LIMCH1-211ENST00000509638 LRP2P98164 4655 aa16.61■□□□□ 0.25
LIMCH1-211ENST00000509638 PDE6GP18545 87 aa16.59■□□□□ 0.25
LIMCH1-211ENST00000509638 F8W1H4 67 aa16.55■□□□□ 0.24
LIMCH1-211ENST00000509638 A0A1B0GV90 55 aa16.53■□□□□ 0.24
LIMCH1-211ENST00000509638 TPRXLQ17RH7 258 aa16.51■□□□□ 0.23
LIMCH1-211ENST00000509638 C21orf62-AS1Q17RA5 79 aa16.47■□□□□ 0.23
LIMCH1-211ENST00000509638 KRTAP13-3Q3SY46 172 aa16.46■□□□□ 0.23
LIMCH1-211ENST00000509638 Q96NJ1 140 aa16.46■□□□□ 0.23
LIMCH1-211ENST00000509638 A0A1B0GW54 56 aa16.43■□□□□ 0.22
LIMCH1-211ENST00000509638 ETDBQ3ZM63 59 aa16.42■□□□□ 0.22
LIMCH1-211ENST00000509638 CDIP1Q9H305 208 aa16.38■□□□□ 0.21
LIMCH1-211ENST00000509638 LINC00472Q9H8W2 130 aa16.36■□□□□ 0.21
LIMCH1-211ENST00000509638 SIGMAR1Q99720 223 aa16.34■□□□□ 0.21
LIMCH1-211ENST00000509638 UBR4Q5T4S7 5183 aa16.33■□□□□ 0.21
LIMCH1-211ENST00000509638 C9orf92A6NGG3 77 aa16.33■□□□□ 0.2
LIMCH1-211ENST00000509638 DEFB116Q30KQ4 102 aa16.33■□□□□ 0.2
LIMCH1-211ENST00000509638 IGKV4-1P06312 121 aa16.31■□□□□ 0.2
LIMCH1-211ENST00000509638 NREPQ16612 68 aa16.23■□□□□ 0.19
LIMCH1-211ENST00000509638 XP32Q5T750 250 aa16.22■□□□□ 0.19
LIMCH1-211ENST00000509638 J3KT08 172 aa16.19■□□□□ 0.18
LIMCH1-211ENST00000509638 LINC00846Q9NV44 126 aa16.13■□□□□ 0.17
LIMCH1-211ENST00000509638 Q6ZVQ6 151 aa16.13■□□□□ 0.17
LIMCH1-211ENST00000509638 IGHV6-1A0A0B4J1U7 121 aa16.09■□□□□ 0.17
LIMCH1-211ENST00000509638 DSCR10P59022 87 aa16.09■□□□□ 0.17
LIMCH1-211ENST00000509638 A0A1B0GVX0 72 aa16.09■□□□□ 0.17
LIMCH1-211ENST00000509638 UBL5Q9BZL1 73 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms