RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RETNQ9HD89 108 aa10.8□□□□□ -0.68
SQSTM1-211ENST00000506690 TRRAPQ9Y4A5 3859 aa10.8□□□□□ -0.68
SQSTM1-211ENST00000506690 REG3GQ6UW15 175 aa10.8□□□□□ -0.68
SQSTM1-211ENST00000506690 IGLV8-61A0A075B6I0 122 aa10.79□□□□□ -0.68
SQSTM1-211ENST00000506690 A0A087WSZ3 146 aa10.79□□□□□ -0.68
SQSTM1-211ENST00000506690 DNAH10OSP0CZ25 163 aa10.79□□□□□ -0.68
SQSTM1-211ENST00000506690 LIMD2Q9BT23 127 aa10.79□□□□□ -0.68
SQSTM1-211ENST00000506690 H0Y9P7 68 aa10.78□□□□□ -0.68
SQSTM1-211ENST00000506690 RPL37AP61513 92 aaKnown RBP10.77□□□□□ -0.68
SQSTM1-211ENST00000506690 UBE2AP49459 152 aa10.77□□□□□ -0.69
SQSTM1-211ENST00000506690 KRTAP24-1Q3LI83 254 aa10.77□□□□□ -0.69
SQSTM1-211ENST00000506690 LINC00588Q9Y4M8 146 aa10.77□□□□□ -0.69
SQSTM1-211ENST00000506690 CASC10Q5T4H9 136 aa10.76□□□□□ -0.69
SQSTM1-211ENST00000506690 OXLD1Q5BKU9 147 aa10.75□□□□□ -0.69
SQSTM1-211ENST00000506690 CHKB-CPT1BH3BT56 60 aa10.75□□□□□ -0.69
SQSTM1-211ENST00000506690 CASC2Q6XLA1 102 aa10.74□□□□□ -0.69
SQSTM1-211ENST00000506690 C9orf163Q8N9P6 203 aa10.74□□□□□ -0.69
SQSTM1-211ENST00000506690 CD164Q04900 197 aa10.74□□□□□ -0.69
SQSTM1-211ENST00000506690 C16orf90A8MZG2 172 aa10.73□□□□□ -0.69
SQSTM1-211ENST00000506690 CNBPP62633 177 aaKnown RBP10.73□□□□□ -0.69
SQSTM1-211ENST00000506690 DEFB131BA0A096LNP1 70 aa10.72□□□□□ -0.69
SQSTM1-211ENST00000506690 DNAH1Q9P2D7 4330 aa10.72□□□□□ -0.69
SQSTM1-211ENST00000506690 PRR15LQ9BU68 103 aa10.72□□□□□ -0.69
SQSTM1-211ENST00000506690 MAST4O15021 2626 aa10.68□□□□□ -0.7
SQSTM1-211ENST00000506690 PRLHP81277 87 aa10.68□□□□□ -0.7
SQSTM1-211ENST00000506690 A8MWP4 228 aa10.68□□□□□ -0.7
SQSTM1-211ENST00000506690 KRTAP10-11P60412 298 aa10.68□□□□□ -0.7
SQSTM1-211ENST00000506690 Q75L30 129 aa10.68□□□□□ -0.7
SQSTM1-211ENST00000506690 LOC101927531A0A1B0GV80 90 aa10.67□□□□□ -0.7
SQSTM1-211ENST00000506690 TENM3Q9P273 2699 aa10.66□□□□□ -0.7
SQSTM1-211ENST00000506690 LCA10Q71F78 164 aa10.66□□□□□ -0.7
SQSTM1-211ENST00000506690 LINC00472Q9H8W2 130 aa10.66□□□□□ -0.7
SQSTM1-211ENST00000506690 FBN1P35555 2871 aaKnown RBP10.66□□□□□ -0.7
SQSTM1-211ENST00000506690 KTN1-AS1Q86SY8 53 aa10.66□□□□□ -0.7
SQSTM1-211ENST00000506690 ATP11AUNQ6ZP68 121 aa10.64□□□□□ -0.71
SQSTM1-211ENST00000506690 COA5Q86WW8 74 aa10.64□□□□□ -0.71
SQSTM1-211ENST00000506690 IGLV7-46A0A075B6I9 117 aa10.64□□□□□ -0.71
SQSTM1-211ENST00000506690 C11orf45Q8TAV5 145 aa10.64□□□□□ -0.71
SQSTM1-211ENST00000506690 ANK2Q01484 3957 aa10.62□□□□□ -0.71
SQSTM1-211ENST00000506690 SPTSSBQ8NFR3 76 aa10.6□□□□□ -0.71
SQSTM1-211ENST00000506690 STAB1Q9NY15 2570 aa10.6□□□□□ -0.71
SQSTM1-211ENST00000506690 A6NED7 52 aa10.59□□□□□ -0.71
SQSTM1-211ENST00000506690 SPRR1BP22528 89 aa10.59□□□□□ -0.71
SQSTM1-211ENST00000506690 MMP24-AS1A0A0U1RRL7 71 aa10.58□□□□□ -0.72
SQSTM1-211ENST00000506690 A0A096LNI7 61 aa10.58□□□□□ -0.72
SQSTM1-211ENST00000506690 A6NN06 94 aa10.56□□□□□ -0.72
SQSTM1-211ENST00000506690 CDC42SE1Q9NRR8 79 aa10.55□□□□□ -0.72
SQSTM1-211ENST00000506690 IGKV2-24A0A0C4DH68 120 aa10.54□□□□□ -0.72
SQSTM1-211ENST00000506690 PHF5AQ7RTV0 110 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-211ENST00000506690 PLAC8Q9NZF1 115 aa10.54□□□□□ -0.72
SQSTM1-211ENST00000506690 COL6A5A8TX70 2615 aa10.53□□□□□ -0.72
SQSTM1-211ENST00000506690 H0Y9J4 135 aa10.53□□□□□ -0.72
SQSTM1-211ENST00000506690 RBM12B-AS1Q9P1G2 102 aa10.53□□□□□ -0.72
SQSTM1-211ENST00000506690 SRRM2Q9UQ35 2752 aaKnown RBP10.53□□□□□ -0.72
SQSTM1-211ENST00000506690 NDUFS5O43920 106 aa10.53□□□□□ -0.72
SQSTM1-211ENST00000506690 LINC01558Q9Y6Z2 57 aa10.52□□□□□ -0.73
SQSTM1-211ENST00000506690 ASB16-AS1Q495Z4 193 aa10.51□□□□□ -0.73
SQSTM1-211ENST00000506690 KRTAP11-1Q8IUC1 163 aa10.5□□□□□ -0.73
SQSTM1-211ENST00000506690 PCOTHQ58A44 107 aa10.49□□□□□ -0.73
SQSTM1-211ENST00000506690 TENM2Q9NT68 2774 aa10.48□□□□□ -0.73
SQSTM1-211ENST00000506690 CMYA5Q8N3K9 4069 aa10.48□□□□□ -0.73
SQSTM1-211ENST00000506690 TP53AIP1Q9HCN2 124 aa10.48□□□□□ -0.73
SQSTM1-211ENST00000506690 SPAG11AQ6PDA7 123 aa10.47□□□□□ -0.73
SQSTM1-211ENST00000506690 Q6ZR54 194 aa10.47□□□□□ -0.73
SQSTM1-211ENST00000506690 DNAH10Q8IVF4 4471 aa10.44□□□□□ -0.74
SQSTM1-211ENST00000506690 Q96NJ1 140 aa10.44□□□□□ -0.74
SQSTM1-211ENST00000506690 MOBPQ13875 183 aa10.44□□□□□ -0.74
SQSTM1-211ENST00000506690 HRES1P13985 223 aa10.4□□□□□ -0.74
SQSTM1-211ENST00000506690 C7orf65Q6ZTY9 151 aa10.4□□□□□ -0.74
SQSTM1-211ENST00000506690 NOTCH1P46531 2555 aa10.4□□□□□ -0.74
SQSTM1-211ENST00000506690 CHTF8P0CG12 524 aa10.39□□□□□ -0.75
SQSTM1-211ENST00000506690 C8orf17Q9NRJ1 99 aa10.39□□□□□ -0.75
SQSTM1-211ENST00000506690 SPINK7P58062 85 aa10.38□□□□□ -0.75
SQSTM1-211ENST00000506690 MDFIQ99750 246 aa10.37□□□□□ -0.75
SQSTM1-211ENST00000506690 KRTAP1-5Q9BYS1 174 aa10.37□□□□□ -0.75
SQSTM1-211ENST00000506690 DNAH3Q8TD57 4116 aa10.36□□□□□ -0.75
SQSTM1-211ENST00000506690 K7EIL1 84 aa10.36□□□□□ -0.75
SQSTM1-211ENST00000506690 LYSTQ99698 3801 aa10.36□□□□□ -0.75
SQSTM1-211ENST00000506690 KRTAP13-1Q8IUC0 172 aa10.35□□□□□ -0.75
SQSTM1-211ENST00000506690 CSMD3Q7Z407 3707 aa10.34□□□□□ -0.75
SQSTM1-211ENST00000506690 DNAH9Q9NYC9 4486 aa10.31□□□□□ -0.76
SQSTM1-211ENST00000506690 A0A1B0GVX0 72 aa10.31□□□□□ -0.76
SQSTM1-211ENST00000506690 NBEAL1Q6ZS30 2694 aa10.29□□□□□ -0.76
SQSTM1-211ENST00000506690 IGHV6-1A0A0B4J1U7 121 aa10.29□□□□□ -0.76
SQSTM1-211ENST00000506690 MRPL34Q9BQ48 92 aaKnown RBP10.29□□□□□ -0.76
SQSTM1-211ENST00000506690 IGLV9-49A0A0B4J1Y8 123 aa10.28□□□□□ -0.76
SQSTM1-211ENST00000506690 C14orf177Q52M58 125 aa10.27□□□□□ -0.77
SQSTM1-211ENST00000506690 MGAM2Q2M2H8 2515 aa10.26□□□□□ -0.77
SQSTM1-211ENST00000506690 HUWE1Q7Z6Z7 4374 aaKnown RBP10.26□□□□□ -0.77
SQSTM1-211ENST00000506690 LINC00483Q53H64 154 aa10.23□□□□□ -0.77
SQSTM1-211ENST00000506690 PRR26Q8N8Z3 221 aa10.23□□□□□ -0.77
SQSTM1-211ENST00000506690 A0A087X002 238 aa10.22□□□□□ -0.77
SQSTM1-211ENST00000506690 NOTCH2NLQ7Z3S9 236 aa10.22□□□□□ -0.77
SQSTM1-211ENST00000506690 PANO1I0J062 215 aa10.21□□□□□ -0.78
SQSTM1-211ENST00000506690 CDK2AP2O75956 126 aa10.21□□□□□ -0.78
SQSTM1-211ENST00000506690 ALMS1Q8TCU4 4167 aa10.19□□□□□ -0.78
SQSTM1-211ENST00000506690 KRTAP13-3Q3SY46 172 aa10.18□□□□□ -0.78
SQSTM1-211ENST00000506690 COL7A1Q02388 2944 aa10.18□□□□□ -0.78
SQSTM1-211ENST00000506690 Q5W150 140 aa10.16□□□□□ -0.78
SQSTM1-211ENST00000506690 WWC2-AS2Q96NR7 200 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms