RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 SMR3AQ99954 134 aa3.54□□□□□ -1.84
USF3-204ENST00000496826 A0A0G2JQZ4 141 aa3.53□□□□□ -1.84
USF3-204ENST00000496826 A6NN06 94 aa3.53□□□□□ -1.85
USF3-204ENST00000496826 MGAM2Q2M2H8 2515 aa3.52□□□□□ -1.85
USF3-204ENST00000496826 ANAPC11Q9NYG5 84 aa3.52□□□□□ -1.85
USF3-204ENST00000496826 HELZ2Q9BYK8 2649 aaKnown RBP3.52□□□□□ -1.85
USF3-204ENST00000496826 K7EIL1 84 aa3.51□□□□□ -1.85
USF3-204ENST00000496826 A0A096LNT2 108 aa3.5□□□□□ -1.85
USF3-204ENST00000496826 CRIP3Q6Q6R5 217 aa3.5□□□□□ -1.85
USF3-204ENST00000496826 STAB2Q8WWQ8 2551 aa3.5□□□□□ -1.85
USF3-204ENST00000496826 BAHCC1Q9P281 2608 aa3.48□□□□□ -1.85
USF3-204ENST00000496826 CASC10Q5T4H9 136 aa3.46□□□□□ -1.85
USF3-204ENST00000496826 GIG44P09565 113 aaPredicted RBP3.45□□□□□ -1.86
USF3-204ENST00000496826 LINC00472Q9H8W2 130 aa3.44□□□□□ -1.86
USF3-204ENST00000496826 NOTCH1P46531 2555 aa3.43□□□□□ -1.86
USF3-204ENST00000496826 SPRR1AP35321 89 aa3.41□□□□□ -1.86
USF3-204ENST00000496826 CENPEQ02224 2701 aa3.4□□□□□ -1.87
USF3-204ENST00000496826 KRTAP10-9P60411 292 aa3.39□□□□□ -1.87
USF3-204ENST00000496826 LCE6AA0A183 80 aa3.39□□□□□ -1.87
USF3-204ENST00000496826 PIEZO2Q9H5I5 2752 aa3.38□□□□□ -1.87
USF3-204ENST00000496826 NBEAL1Q6ZS30 2694 aa3.38□□□□□ -1.87
USF3-204ENST00000496826 HECTD1Q9ULT8 2610 aa3.38□□□□□ -1.87
USF3-204ENST00000496826 KRTAP10-8P60410 259 aa3.37□□□□□ -1.87
USF3-204ENST00000496826 INE1O15225 51 aa3.36□□□□□ -1.87
USF3-204ENST00000496826 KRTAP10-11P60412 298 aa3.35□□□□□ -1.87
USF3-204ENST00000496826 CFAP46Q8IYW2 2715 aa3.35□□□□□ -1.87
USF3-204ENST00000496826 KRTAP11-1Q8IUC1 163 aa3.34□□□□□ -1.87
USF3-204ENST00000496826 MAST4O15021 2626 aa3.34□□□□□ -1.87
USF3-204ENST00000496826 KRTAP4-16G5E9R7 235 aaPredicted RBP3.33□□□□□ -1.88
USF3-204ENST00000496826 KRTAP26-1Q6PEX3 210 aa3.32□□□□□ -1.88
USF3-204ENST00000496826 IGSF10Q6WRI0 2623 aa3.31□□□□□ -1.88
USF3-204ENST00000496826 UNC79Q9P2D8 2635 aa3.31□□□□□ -1.88
USF3-204ENST00000496826 ANKRD11Q6UB99 2663 aaPredicted RBP3.28□□□□□ -1.88
USF3-204ENST00000496826 COL4A2P08572 1712 aa3.28□□□□□ -1.88
USF3-204ENST00000496826 KMT2BQ9UMN6 2715 aaPredicted RBP3.27□□□□□ -1.89
USF3-204ENST00000496826 CEP295Q9C0D2 2601 aa3.26□□□□□ -1.89
USF3-204ENST00000496826 CHD6Q8TD26 2715 aa3.26□□□□□ -1.89
USF3-204ENST00000496826 WDR87Q6ZQQ6 2873 aa3.25□□□□□ -1.89
USF3-204ENST00000496826 ATRQ13535 2644 aa3.25□□□□□ -1.89
USF3-204ENST00000496826 Q6ZRN7 208 aaPredicted RBP3.23□□□□□ -1.89
USF3-204ENST00000496826 KRTAP23-1A1A580 65 aa3.22□□□□□ -1.89
USF3-204ENST00000496826 KRTAP29-1A8MX34 341 aaPredicted RBP3.19□□□□□ -1.9
USF3-204ENST00000496826 FLNBO75369 2602 aaKnown RBP3.19□□□□□ -1.9
USF3-204ENST00000496826 KRTAP10-10P60014 251 aa3.18□□□□□ -1.9
USF3-204ENST00000496826 BPTFQ12830 3046 aa3.17□□□□□ -1.9
USF3-204ENST00000496826 COL6A5A8TX70 2615 aa3.16□□□□□ -1.9
USF3-204ENST00000496826 KRTAP10-1P60331 282 aa3.15□□□□□ -1.91
USF3-204ENST00000496826 TPRXLQ17RH7 258 aa3.14□□□□□ -1.91
USF3-204ENST00000496826 TEP1Q99973 2627 aaKnown RBP3.11□□□□□ -1.91
USF3-204ENST00000496826 KRTAP13-2Q52LG2 175 aa3.11□□□□□ -1.91
USF3-204ENST00000496826 NSD1Q96L73 2696 aaPredicted RBP3.1□□□□□ -1.91
USF3-204ENST00000496826 KRTAP21-3Q3LHN1 58 aa3.09□□□□□ -1.91
USF3-204ENST00000496826 KRTAP12-2P59991 146 aa3.07□□□□□ -1.92
USF3-204ENST00000496826 KRTAP10-6P60371 365 aaPredicted RBP3.07□□□□□ -1.92
USF3-204ENST00000496826 KRTAP13-4Q3LI77 160 aa3.06□□□□□ -1.92
USF3-204ENST00000496826 ITPR3Q14573 2671 aa3.05□□□□□ -1.92
USF3-204ENST00000496826 KRTAP15-1Q3LI76 137 aa3.05□□□□□ -1.92
USF3-204ENST00000496826 KRTAP10-3P60369 221 aa3.04□□□□□ -1.92
USF3-204ENST00000496826 AKAP13Q12802 2813 aa3.04□□□□□ -1.92
USF3-204ENST00000496826 KRTAP10-2P60368 255 aa3.03□□□□□ -1.92
USF3-204ENST00000496826 H0YAA0 97 aa3.01□□□□□ -1.93
USF3-204ENST00000496826 MT3P25713 68 aa3□□□□□ -1.93
USF3-204ENST00000496826 KRTAP19-4Q3LI73 84 aa3□□□□□ -1.93
USF3-204ENST00000496826 ITPR2Q14571 2701 aa3□□□□□ -1.93
USF3-204ENST00000496826 TENM3Q9P273 2699 aa2.99□□□□□ -1.93
USF3-204ENST00000496826 GCN1Q92616 2671 aaKnown RBP2.98□□□□□ -1.93
USF3-204ENST00000496826 FLNAP21333 2647 aaKnown RBP2.98□□□□□ -1.93
USF3-204ENST00000496826 SETXQ7Z333 2677 aaKnown RBP2.96□□□□□ -1.93
USF3-204ENST00000496826 XP32Q5T750 250 aa2.96□□□□□ -1.93
USF3-204ENST00000496826 PRRC2CQ9Y520 2896 aaKnown RBP2.96□□□□□ -1.94
USF3-204ENST00000496826 ZFHX3Q15911 3703 aa2.92□□□□□ -1.94
USF3-204ENST00000496826 KRTAP1-5Q9BYS1 174 aa2.9□□□□□ -1.94
USF3-204ENST00000496826 ZNF292O60281 2723 aa2.9□□□□□ -1.94
USF3-204ENST00000496826 MGAQ8IWI9 3026 aa2.9□□□□□ -1.95
USF3-204ENST00000496826 A0A1B0GVY2 172 aa2.89□□□□□ -1.95
USF3-204ENST00000496826 KRTAP1-1Q07627 177 aa2.89□□□□□ -1.95
USF3-204ENST00000496826 KRTAP13-1Q8IUC0 172 aa2.89□□□□□ -1.95
USF3-204ENST00000496826 SRCAPQ6ZRS2 3230 aa2.88□□□□□ -1.95
USF3-204ENST00000496826 A0A0C4DFX4 3053 aa2.88□□□□□ -1.95
USF3-204ENST00000496826 KRTAP1-3Q8IUG1 177 aa2.87□□□□□ -1.95
USF3-204ENST00000496826 TEX15Q9BXT5 2789 aa2.87□□□□□ -1.95
USF3-204ENST00000496826 KRTAP10-7P60409 375 aaPredicted RBP2.86□□□□□ -1.95
USF3-204ENST00000496826 MAP1AP78559 2803 aaPredicted RBP2.86□□□□□ -1.95
USF3-204ENST00000496826 CHD9Q3L8U1 2897 aa2.84□□□□□ -1.95
USF3-204ENST00000496826 GOLGB1Q14789 3259 aaKnown RBP2.83□□□□□ -1.96
USF3-204ENST00000496826 DSPP15924 2871 aaKnown RBP2.82□□□□□ -1.96
USF3-204ENST00000496826 SRRM2Q9UQ35 2752 aaKnown RBP2.82□□□□□ -1.96
USF3-204ENST00000496826 KRTAP13-3Q3SY46 172 aa2.81□□□□□ -1.96
USF3-204ENST00000496826 ITPR1Q14643 2758 aa2.8□□□□□ -1.96
USF3-204ENST00000496826 TRIOO75962 3097 aa2.79□□□□□ -1.96
USF3-204ENST00000496826 UBR5O95071 2799 aaPredicted RBP2.79□□□□□ -1.96
USF3-204ENST00000496826 C5orf42Q9H799 3197 aa2.79□□□□□ -1.96
USF3-204ENST00000496826 KRTAP10-12P60413 245 aa2.78□□□□□ -1.97
USF3-204ENST00000496826 UTRNP46939 3433 aa2.75□□□□□ -1.97
USF3-204ENST00000496826 LRBAP50851 2863 aa2.75□□□□□ -1.97
USF3-204ENST00000496826 REV3LO60673 3130 aa2.75□□□□□ -1.97
USF3-204ENST00000496826 KRTAP12-1P59990 96 aa2.71□□□□□ -1.98
USF3-204ENST00000496826 CHD7Q9P2D1 2997 aa2.71□□□□□ -1.98
USF3-204ENST00000496826 APCP25054 2843 aa2.7□□□□□ -1.98
USF3-204ENST00000496826 UTP20O75691 2785 aaKnown RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms