RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CENPEQ02224 2701 aa8.04□□□□□ -1.12
PTPRF-215ENST00000496447 KRTAP1-5Q9BYS1 174 aa8.04□□□□□ -1.12
PTPRF-215ENST00000496447 HRES1P13985 223 aa8.04□□□□□ -1.12
PTPRF-215ENST00000496447 SPRR1AP35321 89 aa8.03□□□□□ -1.12
PTPRF-215ENST00000496447 CHD7Q9P2D1 2997 aa8.03□□□□□ -1.12
PTPRF-215ENST00000496447 DMAC1Q96GE9 116 aa8.02□□□□□ -1.13
PTPRF-215ENST00000496447 Q8NDZ9 215 aa8□□□□□ -1.13
PTPRF-215ENST00000496447 MMP24-AS1A0A0U1RRL7 71 aa8□□□□□ -1.13
PTPRF-215ENST00000496447 TEP1Q99973 2627 aaKnown RBP7.99□□□□□ -1.13
PTPRF-215ENST00000496447 KRTAP10-1P60331 282 aa7.99□□□□□ -1.13
PTPRF-215ENST00000496447 LINC00483Q53H64 154 aa7.99□□□□□ -1.13
PTPRF-215ENST00000496447 A0A1B0GU33 70 aa7.98□□□□□ -1.13
PTPRF-215ENST00000496447 SEC61BP60468 96 aaKnown RBP7.97□□□□□ -1.13
PTPRF-215ENST00000496447 S4R3F8 94 aa7.97□□□□□ -1.13
PTPRF-215ENST00000496447 C5orf42Q9H799 3197 aa7.97□□□□□ -1.13
PTPRF-215ENST00000496447 SETXQ7Z333 2677 aaKnown RBP7.97□□□□□ -1.13
PTPRF-215ENST00000496447 KRTAP10-2P60368 255 aa7.96□□□□□ -1.13
PTPRF-215ENST00000496447 SPRR1BP22528 89 aa7.96□□□□□ -1.14
PTPRF-215ENST00000496447 A0A0A0MQY5 61 aa7.96□□□□□ -1.14
PTPRF-215ENST00000496447 TEX15Q9BXT5 2789 aa7.94□□□□□ -1.14
PTPRF-215ENST00000496447 A6NN06 94 aa7.92□□□□□ -1.14
PTPRF-215ENST00000496447 KRTAP26-1Q6PEX3 210 aa7.91□□□□□ -1.14
PTPRF-215ENST00000496447 Q5W150 140 aa7.9□□□□□ -1.15
PTPRF-215ENST00000496447 CHD9Q3L8U1 2897 aa7.9□□□□□ -1.15
PTPRF-215ENST00000496447 LINC00472Q9H8W2 130 aa7.9□□□□□ -1.15
PTPRF-215ENST00000496447 AKAP13Q12802 2813 aa7.88□□□□□ -1.15
PTPRF-215ENST00000496447 COL6A5A8TX70 2615 aa7.88□□□□□ -1.15
PTPRF-215ENST00000496447 CHD6Q8TD26 2715 aa7.86□□□□□ -1.15
PTPRF-215ENST00000496447 ZNF292O60281 2723 aa7.85□□□□□ -1.15
PTPRF-215ENST00000496447 R4GN34 69 aa7.83□□□□□ -1.16
PTPRF-215ENST00000496447 Q6ZR54 194 aa7.81□□□□□ -1.16
PTPRF-215ENST00000496447 MGAQ8IWI9 3026 aa7.81□□□□□ -1.16
PTPRF-215ENST00000496447 BAHCC1Q9P281 2608 aa7.81□□□□□ -1.16
PTPRF-215ENST00000496447 NBEAL1Q6ZS30 2694 aa7.81□□□□□ -1.16
PTPRF-215ENST00000496447 RANBP2P49792 3224 aaKnown RBP7.79□□□□□ -1.16
PTPRF-215ENST00000496447 PANO1I0J062 215 aa7.79□□□□□ -1.16
PTPRF-215ENST00000496447 UNC79Q9P2D8 2635 aa7.78□□□□□ -1.16
PTPRF-215ENST00000496447 SPATA8Q6RVD6 105 aa7.77□□□□□ -1.17
PTPRF-215ENST00000496447 KRTAP29-1A8MX34 341 aaPredicted RBP7.76□□□□□ -1.17
PTPRF-215ENST00000496447 HTTP42858 3142 aa7.75□□□□□ -1.17
PTPRF-215ENST00000496447 ROMO1P60602 79 aa7.75□□□□□ -1.17
PTPRF-215ENST00000496447 NOTCH1P46531 2555 aa7.74□□□□□ -1.17
PTPRF-215ENST00000496447 KRTAP16-1A8MUX0 517 aa7.74□□□□□ -1.17
PTPRF-215ENST00000496447 FLG2Q5D862 2391 aaPredicted RBP7.7□□□□□ -1.18
PTPRF-215ENST00000496447 IGSF10Q6WRI0 2623 aa7.7□□□□□ -1.18
PTPRF-215ENST00000496447 GCN1Q92616 2671 aaKnown RBP7.7□□□□□ -1.18
PTPRF-215ENST00000496447 PCNTO95613 3336 aa7.7□□□□□ -1.18
PTPRF-215ENST00000496447 A0A087X002 238 aa7.69□□□□□ -1.18
PTPRF-215ENST00000496447 TRANK1O15050 2925 aa7.69□□□□□ -1.18
PTPRF-215ENST00000496447 KRTAP4-16G5E9R7 235 aaPredicted RBP7.68□□□□□ -1.18
PTPRF-215ENST00000496447 M0QZ58 72 aa7.67□□□□□ -1.18
PTPRF-215ENST00000496447 KRTAP25-1Q3LHN0 102 aa7.67□□□□□ -1.18
PTPRF-215ENST00000496447 CFAP54Q96N23 3096 aa7.66□□□□□ -1.18
PTPRF-215ENST00000496447 RPL37P61927 97 aaKnown RBP7.66□□□□□ -1.18
PTPRF-215ENST00000496447 LAMA3Q16787 3333 aa7.65□□□□□ -1.18
PTPRF-215ENST00000496447 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
PTPRF-215ENST00000496447 DSPP15924 2871 aaKnown RBP7.64□□□□□ -1.19
PTPRF-215ENST00000496447 A8MU10 97 aa7.61□□□□□ -1.19
PTPRF-215ENST00000496447 Q6ZRN7 208 aaPredicted RBP7.6□□□□□ -1.19
PTPRF-215ENST00000496447 WDFY4Q6ZS81 3184 aa7.6□□□□□ -1.19
PTPRF-215ENST00000496447 PLAC4Q8WY50 150 aa7.6□□□□□ -1.19
PTPRF-215ENST00000496447 ADM2Q7Z4H4 148 aa7.59□□□□□ -1.19
PTPRF-215ENST00000496447 UBR5O95071 2799 aaPredicted RBP7.58□□□□□ -1.2
PTPRF-215ENST00000496447 MKI67P46013 3256 aaKnown RBP7.56□□□□□ -1.2
PTPRF-215ENST00000496447 A0A0C4DFX4 3053 aa7.55□□□□□ -1.2
PTPRF-215ENST00000496447 KRTAP11-1Q8IUC1 163 aa7.55□□□□□ -1.2
PTPRF-215ENST00000496447 RPS29P62273 56 aaKnown RBP7.54□□□□□ -1.2
PTPRF-215ENST00000496447 NBEAL2Q6ZNJ1 2754 aa7.54□□□□□ -1.2
PTPRF-215ENST00000496447 KRTAP21-3Q3LHN1 58 aa7.54□□□□□ -1.2
PTPRF-215ENST00000496447 DMBT1Q9UGM3 2413 aaPredicted RBP7.54□□□□□ -1.2
PTPRF-215ENST00000496447 ITPR2Q14571 2701 aa7.53□□□□□ -1.2
PTPRF-215ENST00000496447 NSD1Q96L73 2696 aaPredicted RBP7.51□□□□□ -1.21
PTPRF-215ENST00000496447 PRUNE2Q8WUY3 3088 aa7.51□□□□□ -1.21
PTPRF-215ENST00000496447 NOTCH2NLQ7Z3S9 236 aa7.5□□□□□ -1.21
PTPRF-215ENST00000496447 STAB2Q8WWQ8 2551 aa7.5□□□□□ -1.21
PTPRF-215ENST00000496447 MAP1AP78559 2803 aaPredicted RBP7.49□□□□□ -1.21
PTPRF-215ENST00000496447 BRCA2P51587 3418 aa7.49□□□□□ -1.21
PTPRF-215ENST00000496447 FRYQ5TBA9 3013 aa7.46□□□□□ -1.22
PTPRF-215ENST00000496447 NDUFAF8A1L188 74 aa7.45□□□□□ -1.22
PTPRF-215ENST00000496447 KRTAP13-2Q52LG2 175 aa7.45□□□□□ -1.22
PTPRF-215ENST00000496447 KRTAP7-1Q8IUC3 87 aa7.44□□□□□ -1.22
PTPRF-215ENST00000496447 LAMA2P24043 3122 aaKnown RBP7.42□□□□□ -1.22
PTPRF-215ENST00000496447 ITPR1Q14643 2758 aa7.4□□□□□ -1.22
PTPRF-215ENST00000496447 TRIOO75962 3097 aa7.39□□□□□ -1.23
PTPRF-215ENST00000496447 KRTAP13-1Q8IUC0 172 aa7.38□□□□□ -1.23
PTPRF-215ENST00000496447 XIRP2A4UGR9 3374 aa7.37□□□□□ -1.23
PTPRF-215ENST00000496447 A8MUU9 505 aa7.36□□□□□ -1.23
PTPRF-215ENST00000496447 C20orf166-AS1Q96NR2 134 aa7.36□□□□□ -1.23
PTPRF-215ENST00000496447 KMT2BQ9UMN6 2715 aaPredicted RBP7.33□□□□□ -1.24
PTPRF-215ENST00000496447 UNC80Q8N2C7 3258 aa7.31□□□□□ -1.24
PTPRF-215ENST00000496447 VPS13AQ96RL7 3174 aa7.3□□□□□ -1.24
PTPRF-215ENST00000496447 FLNCQ14315 2725 aa7.28□□□□□ -1.24
PTPRF-215ENST00000496447 HIVEP1P15822 2718 aa7.28□□□□□ -1.24
PTPRF-215ENST00000496447 TACC2O95359 2948 aa7.28□□□□□ -1.24
PTPRF-215ENST00000496447 REV3LO60673 3130 aa7.25□□□□□ -1.25
PTPRF-215ENST00000496447 TENM4Q6N022 2769 aa7.25□□□□□ -1.25
PTPRF-215ENST00000496447 UTP20O75691 2785 aaKnown RBP7.24□□□□□ -1.25
PTPRF-215ENST00000496447 ATMQ13315 3056 aa7.22□□□□□ -1.25
PTPRF-215ENST00000496447 CDH23Q9H251 3354 aa7.21□□□□□ -1.25
PTPRF-215ENST00000496447 COL12A1Q99715 3063 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms