RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 KLKP1Q107X0 134 aa4.62□□□□□ -1.67
NPHP3-208ENST00000490993 CELSR2Q9HCU4 2923 aa4.61□□□□□ -1.67
NPHP3-208ENST00000490993 NSD1Q96L73 2696 aaPredicted RBP4.61□□□□□ -1.67
NPHP3-208ENST00000490993 IGLV8-61A0A075B6I0 122 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 KRTAP4-16G5E9R7 235 aaPredicted RBP4.6□□□□□ -1.67
NPHP3-208ENST00000490993 SPRR1BP22528 89 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 SSBP3-AS1Q7Z2R9 100 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 PRR15Q8IV56 129 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 PSORS1C2Q9UIG4 136 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 IGLV7-43P04211 117 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 HIVEP1P15822 2718 aa4.6□□□□□ -1.67
NPHP3-208ENST00000490993 SMG1Q96Q15 3661 aaKnown RBP4.6□□□□□ -1.67
NPHP3-208ENST00000490993 C1orf64Q8NEQ6 169 aa4.59□□□□□ -1.67
NPHP3-208ENST00000490993 PDZD2O15018 2839 aa4.59□□□□□ -1.67
NPHP3-208ENST00000490993 PLAC8Q9NZF1 115 aa4.59□□□□□ -1.68
NPHP3-208ENST00000490993 CRYBG3Q68DQ2 2970 aa4.58□□□□□ -1.68
NPHP3-208ENST00000490993 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.58□□□□□ -1.68
NPHP3-208ENST00000490993 C8orf87E5RJ46 101 aa4.58□□□□□ -1.68
NPHP3-208ENST00000490993 MXRA5Q9NR99 2828 aa4.57□□□□□ -1.68
NPHP3-208ENST00000490993 TNP2Q05952 138 aa4.57□□□□□ -1.68
NPHP3-208ENST00000490993 TRAV22A0A0B4J277 110 aa4.57□□□□□ -1.68
NPHP3-208ENST00000490993 SPENQ96T58 3664 aaKnown RBP4.56□□□□□ -1.68
NPHP3-208ENST00000490993 PLA2G1BP04054 148 aaKnown RBP4.56□□□□□ -1.68
NPHP3-208ENST00000490993 LINC00336Q6ZUF6 198 aa4.56□□□□□ -1.68
NPHP3-208ENST00000490993 NBEAL2Q6ZNJ1 2754 aa4.56□□□□□ -1.68
NPHP3-208ENST00000490993 A0A0G2JQZ4 141 aa4.55□□□□□ -1.68
NPHP3-208ENST00000490993 DSCR10P59022 87 aa4.55□□□□□ -1.68
NPHP3-208ENST00000490993 CD164Q04900 197 aa4.55□□□□□ -1.68
NPHP3-208ENST00000490993 A0A1B0GVX0 72 aa4.55□□□□□ -1.68
NPHP3-208ENST00000490993 H7BZZ5 65 aa4.54□□□□□ -1.68
NPHP3-208ENST00000490993 MRPL34Q9BQ48 92 aaKnown RBP4.54□□□□□ -1.68
NPHP3-208ENST00000490993 OCR1Q9BZK8 76 aa4.54□□□□□ -1.68
NPHP3-208ENST00000490993 C8orf17Q9NRJ1 99 aa4.54□□□□□ -1.68
NPHP3-208ENST00000490993 Q6ZR54 194 aa4.54□□□□□ -1.68
NPHP3-208ENST00000490993 TYMSOSQ8TAI1 123 aa4.54□□□□□ -1.68
NPHP3-208ENST00000490993 LINC00313P59037 77 aa4.53□□□□□ -1.68
NPHP3-208ENST00000490993 COL6A5A8TX70 2615 aa4.53□□□□□ -1.68
NPHP3-208ENST00000490993 Q6ZRN7 208 aaPredicted RBP4.53□□□□□ -1.68
NPHP3-208ENST00000490993 TENM4Q6N022 2769 aa4.53□□□□□ -1.68
NPHP3-208ENST00000490993 PCOTHQ58A44 107 aa4.52□□□□□ -1.69
NPHP3-208ENST00000490993 MGAM2Q2M2H8 2515 aa4.52□□□□□ -1.69
NPHP3-208ENST00000490993 KRTAP7-1Q8IUC3 87 aa4.51□□□□□ -1.69
NPHP3-208ENST00000490993 LOC101927531A0A1B0GV80 90 aa4.51□□□□□ -1.69
NPHP3-208ENST00000490993 BAHCC1Q9P281 2608 aa4.51□□□□□ -1.69
NPHP3-208ENST00000490993 STAB1Q9NY15 2570 aa4.51□□□□□ -1.69
NPHP3-208ENST00000490993 ASH1LQ9NR48 2969 aaKnown RBP4.51□□□□□ -1.69
NPHP3-208ENST00000490993 LINC00483Q53H64 154 aa4.5□□□□□ -1.69
NPHP3-208ENST00000490993 SPAG11AQ6PDA7 123 aa4.5□□□□□ -1.69
NPHP3-208ENST00000490993 FAM229BQ4G0N7 80 aa4.5□□□□□ -1.69
NPHP3-208ENST00000490993 SPINT4Q6UDR6 99 aa4.5□□□□□ -1.69
NPHP3-208ENST00000490993 ANK3Q12955 4377 aaKnown RBP4.5□□□□□ -1.69
NPHP3-208ENST00000490993 ANAPC11Q9NYG5 84 aa4.49□□□□□ -1.69
NPHP3-208ENST00000490993 FAM229AH3BQW9 127 aa4.49□□□□□ -1.69
NPHP3-208ENST00000490993 KRTAP21-3Q3LHN1 58 aa4.49□□□□□ -1.69
NPHP3-208ENST00000490993 LINC00472Q9H8W2 130 aa4.48□□□□□ -1.69
NPHP3-208ENST00000490993 NF1P21359 2839 aa4.48□□□□□ -1.69
NPHP3-208ENST00000490993 NIPBLQ6KC79 2804 aaeCLIP4.47□□□□□ -1.69
NPHP3-208ENST00000490993 NOTCH1P46531 2555 aa4.47□□□□□ -1.69
NPHP3-208ENST00000490993 SPANXA2-OT1Q8N9U9 137 aa4.47□□□□□ -1.69
NPHP3-208ENST00000490993 PANO1I0J062 215 aa4.46□□□□□ -1.7
NPHP3-208ENST00000490993 SPINK1P00995 79 aa4.46□□□□□ -1.7
NPHP3-208ENST00000490993 ACYP2P14621 99 aa4.46□□□□□ -1.7
NPHP3-208ENST00000490993 LINC00304Q8N9R0 145 aa4.46□□□□□ -1.7
NPHP3-208ENST00000490993 C4orf26Q17RF5 130 aa4.45□□□□□ -1.7
NPHP3-208ENST00000490993 RETNLBQ9BQ08 111 aa4.45□□□□□ -1.7
NPHP3-208ENST00000490993 CSMD1Q96PZ7 3565 aa4.44□□□□□ -1.7
NPHP3-208ENST00000490993 MMP24-AS1A0A0U1RRL7 71 aa4.44□□□□□ -1.7
NPHP3-208ENST00000490993 KRTAP13-1Q8IUC0 172 aa4.43□□□□□ -1.7
NPHP3-208ENST00000490993 CELSR1Q9NYQ6 3014 aa4.43□□□□□ -1.7
NPHP3-208ENST00000490993 KRTAP11-1Q8IUC1 163 aa4.43□□□□□ -1.7
NPHP3-208ENST00000490993 LINC01554Q52M75 96 aa4.42□□□□□ -1.7
NPHP3-208ENST00000490993 Q96NJ1 140 aa4.42□□□□□ -1.7
NPHP3-208ENST00000490993 IGKV2D-30A0A075B6S6 120 aa4.42□□□□□ -1.7
NPHP3-208ENST00000490993 IGKV2-30P06310 120 aa4.42□□□□□ -1.7
NPHP3-208ENST00000490993 PRO0628Q9UI54 55 aa4.42□□□□□ -1.7
NPHP3-208ENST00000490993 OTOGQ6ZRI0 2925 aa4.41□□□□□ -1.7
NPHP3-208ENST00000490993 KRTAP10-2P60368 255 aa4.41□□□□□ -1.7
NPHP3-208ENST00000490993 CYP4F30PQ9H0H9 118 aa4.41□□□□□ -1.7
NPHP3-208ENST00000490993 CYSTM1Q9H1C7 97 aa4.41□□□□□ -1.7
NPHP3-208ENST00000490993 PSPHP1O15172 72 aa4.41□□□□□ -1.7
NPHP3-208ENST00000490993 KRTAP10-1P60331 282 aa4.4□□□□□ -1.7
NPHP3-208ENST00000490993 COA5Q86WW8 74 aa4.4□□□□□ -1.71
NPHP3-208ENST00000490993 LCE6AA0A183 80 aa4.39□□□□□ -1.71
NPHP3-208ENST00000490993 C7orf65Q6ZTY9 151 aa4.39□□□□□ -1.71
NPHP3-208ENST00000490993 KRTAP29-1A8MX34 341 aaPredicted RBP4.38□□□□□ -1.71
NPHP3-208ENST00000490993 SMR3BP02814 79 aaPredicted RBP4.38□□□□□ -1.71
NPHP3-208ENST00000490993 SVEP1Q4LDE5 3571 aa4.38□□□□□ -1.71
NPHP3-208ENST00000490993 IGLV7-46A0A075B6I9 117 aa4.37□□□□□ -1.71
NPHP3-208ENST00000490993 ASB16-AS1Q495Z4 193 aa4.36□□□□□ -1.71
NPHP3-208ENST00000490993 NBEAL1Q6ZS30 2694 aa4.35□□□□□ -1.71
NPHP3-208ENST00000490993 NBPF19A0A087WUL8 3843 aa4.35□□□□□ -1.71
NPHP3-208ENST00000490993 KTN1-AS1Q86SY8 53 aa4.34□□□□□ -1.71
NPHP3-208ENST00000490993 Q1T7F1 81 aa4.33□□□□□ -1.72
NPHP3-208ENST00000490993 PRR26Q8N8Z3 221 aa4.33□□□□□ -1.72
NPHP3-208ENST00000490993 ZCCHC13Q8WW36 166 aaKnown RBP4.33□□□□□ -1.72
NPHP3-208ENST00000490993 A0A1B0GU69 56 aa4.33□□□□□ -1.72
NPHP3-208ENST00000490993 CSMD2Q7Z408 3487 aa4.33□□□□□ -1.72
NPHP3-208ENST00000490993 TENM1Q9UKZ4 2725 aa4.32□□□□□ -1.72
NPHP3-208ENST00000490993 ATP11AUNQ6ZP68 121 aa4.32□□□□□ -1.72
NPHP3-208ENST00000490993 Q5XG85 94 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms