RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 OXTP01178 125 aa10.71□□□□□ -0.69
NPHP4-209ENST00000489180 LUZP6Q538Z0 58 aa10.71□□□□□ -0.7
NPHP4-209ENST00000489180 CAMK2N1Q7Z7J9 78 aa10.69□□□□□ -0.7
NPHP4-209ENST00000489180 HELZ2Q9BYK8 2649 aaKnown RBP10.68□□□□□ -0.7
NPHP4-209ENST00000489180 KRTAP1-5Q9BYS1 174 aa10.67□□□□□ -0.7
NPHP4-209ENST00000489180 SPRR1BP22528 89 aa10.65□□□□□ -0.7
NPHP4-209ENST00000489180 CHD9Q3L8U1 2897 aa10.64□□□□□ -0.71
NPHP4-209ENST00000489180 CSAG1Q6PB30 78 aa10.64□□□□□ -0.71
NPHP4-209ENST00000489180 KRTAP26-1Q6PEX3 210 aa10.63□□□□□ -0.71
NPHP4-209ENST00000489180 S4R3F8 94 aa10.62□□□□□ -0.71
NPHP4-209ENST00000489180 CFAP46Q8IYW2 2715 aa10.62□□□□□ -0.71
NPHP4-209ENST00000489180 CENPEQ02224 2701 aa10.62□□□□□ -0.71
NPHP4-209ENST00000489180 MKI67P46013 3256 aaKnown RBP10.61□□□□□ -0.71
NPHP4-209ENST00000489180 DMAC1Q96GE9 116 aa10.6□□□□□ -0.71
NPHP4-209ENST00000489180 HTTP42858 3142 aa10.59□□□□□ -0.71
NPHP4-209ENST00000489180 RANBP2P49792 3224 aaKnown RBP10.56□□□□□ -0.72
NPHP4-209ENST00000489180 AKAP13Q12802 2813 aa10.54□□□□□ -0.72
NPHP4-209ENST00000489180 CHD6Q8TD26 2715 aa10.53□□□□□ -0.72
NPHP4-209ENST00000489180 MGAQ8IWI9 3026 aa10.53□□□□□ -0.72
NPHP4-209ENST00000489180 M0R2T5 61 aa10.52□□□□□ -0.73
NPHP4-209ENST00000489180 LINC00483Q53H64 154 aa10.51□□□□□ -0.73
NPHP4-209ENST00000489180 H3BS24 57 aa10.5□□□□□ -0.73
NPHP4-209ENST00000489180 LAMA3Q16787 3333 aa10.5□□□□□ -0.73
NPHP4-209ENST00000489180 LAMA2P24043 3122 aaKnown RBP10.5□□□□□ -0.73
NPHP4-209ENST00000489180 BRCA2P51587 3418 aa10.46□□□□□ -0.74
NPHP4-209ENST00000489180 PANO1I0J062 215 aa10.45□□□□□ -0.74
NPHP4-209ENST00000489180 KRTAP10-2P60368 255 aa10.44□□□□□ -0.74
NPHP4-209ENST00000489180 KRTAP10-1P60331 282 aa10.44□□□□□ -0.74
NPHP4-209ENST00000489180 KRTAP4-16G5E9R7 235 aaPredicted RBP10.43□□□□□ -0.74
NPHP4-209ENST00000489180 R4GN34 69 aa10.41□□□□□ -0.74
NPHP4-209ENST00000489180 TRIOO75962 3097 aa10.38□□□□□ -0.75
NPHP4-209ENST00000489180 GCN1Q92616 2671 aaKnown RBP10.38□□□□□ -0.75
NPHP4-209ENST00000489180 KRTAP29-1A8MX34 341 aaPredicted RBP10.38□□□□□ -0.75
NPHP4-209ENST00000489180 Q6ZR54 194 aa10.37□□□□□ -0.75
NPHP4-209ENST00000489180 STAB1Q9NY15 2570 aa10.36□□□□□ -0.75
NPHP4-209ENST00000489180 WDFY4Q6ZS81 3184 aa10.36□□□□□ -0.75
NPHP4-209ENST00000489180 H1FX-AS1Q4G0G2 97 aa10.36□□□□□ -0.75
NPHP4-209ENST00000489180 RPL37P61927 97 aaKnown RBP10.36□□□□□ -0.75
NPHP4-209ENST00000489180 TEX15Q9BXT5 2789 aa10.35□□□□□ -0.75
NPHP4-209ENST00000489180 ROMO1P60602 79 aa10.35□□□□□ -0.75
NPHP4-209ENST00000489180 SPATA8Q6RVD6 105 aa10.35□□□□□ -0.75
NPHP4-209ENST00000489180 NBEAL1Q6ZS30 2694 aa10.34□□□□□ -0.75
NPHP4-209ENST00000489180 TRANK1O15050 2925 aa10.33□□□□□ -0.76
NPHP4-209ENST00000489180 Q5VSD8 79 aa10.32□□□□□ -0.76
NPHP4-209ENST00000489180 A0A087X002 238 aa10.32□□□□□ -0.76
NPHP4-209ENST00000489180 NOTCH2NLQ7Z3S9 236 aa10.32□□□□□ -0.76
NPHP4-209ENST00000489180 TEP1Q99973 2627 aaKnown RBP10.31□□□□□ -0.76
NPHP4-209ENST00000489180 UNC80Q8N2C7 3258 aa10.3□□□□□ -0.76
NPHP4-209ENST00000489180 UNC79Q9P2D8 2635 aa10.3□□□□□ -0.76
NPHP4-209ENST00000489180 ZNF292O60281 2723 aa10.29□□□□□ -0.76
NPHP4-209ENST00000489180 XIRP2A4UGR9 3374 aa10.28□□□□□ -0.76
NPHP4-209ENST00000489180 M0QZ58 72 aa10.27□□□□□ -0.77
NPHP4-209ENST00000489180 KRTAP11-1Q8IUC1 163 aa10.25□□□□□ -0.77
NPHP4-209ENST00000489180 NBEAL2Q6ZNJ1 2754 aa10.25□□□□□ -0.77
NPHP4-209ENST00000489180 PRUNE2Q8WUY3 3088 aa10.25□□□□□ -0.77
NPHP4-209ENST00000489180 FREM2Q5SZK8 3169 aa10.22□□□□□ -0.77
NPHP4-209ENST00000489180 ADM2Q7Z4H4 148 aa10.21□□□□□ -0.77
NPHP4-209ENST00000489180 A0A0A0MQY5 61 aa10.21□□□□□ -0.78
NPHP4-209ENST00000489180 SEC61BP60468 96 aaKnown RBP10.21□□□□□ -0.78
NPHP4-209ENST00000489180 FRYQ5TBA9 3013 aa10.19□□□□□ -0.78
NPHP4-209ENST00000489180 COL6A5A8TX70 2615 aa10.17□□□□□ -0.78
NPHP4-209ENST00000489180 MAP1AP78559 2803 aaPredicted RBP10.17□□□□□ -0.78
NPHP4-209ENST00000489180 CELSR3Q9NYQ7 3312 aa10.16□□□□□ -0.78
NPHP4-209ENST00000489180 NOTCH1P46531 2555 aa10.14□□□□□ -0.79
NPHP4-209ENST00000489180 VPS13AQ96RL7 3174 aa10.14□□□□□ -0.79
NPHP4-209ENST00000489180 LCE6AA0A183 80 aa10.14□□□□□ -0.79
NPHP4-209ENST00000489180 KRTAP7-1Q8IUC3 87 aa10.14□□□□□ -0.79
NPHP4-209ENST00000489180 SETXQ7Z333 2677 aaKnown RBP10.13□□□□□ -0.79
NPHP4-209ENST00000489180 FLG2Q5D862 2391 aaPredicted RBP10.13□□□□□ -0.79
NPHP4-209ENST00000489180 CDH23Q9H251 3354 aa10.11□□□□□ -0.79
NPHP4-209ENST00000489180 DSPP15924 2871 aaKnown RBP10.1□□□□□ -0.79
NPHP4-209ENST00000489180 A8MU10 97 aa10.08□□□□□ -0.8
NPHP4-209ENST00000489180 DMBT1Q9UGM3 2413 aaPredicted RBP10.06□□□□□ -0.8
NPHP4-209ENST00000489180 A6NN06 94 aa10.05□□□□□ -0.8
NPHP4-209ENST00000489180 ASB16-AS1Q495Z4 193 aa10.05□□□□□ -0.8
NPHP4-209ENST00000489180 IGSF10Q6WRI0 2623 aa10.01□□□□□ -0.81
NPHP4-209ENST00000489180 Q6ZRN7 208 aaPredicted RBP9.99□□□□□ -0.81
NPHP4-209ENST00000489180 KALRNO60229 2985 aa9.99□□□□□ -0.81
NPHP4-209ENST00000489180 DNAH14Q0VDD8 3507 aa9.98□□□□□ -0.81
NPHP4-209ENST00000489180 UBR5O95071 2799 aaPredicted RBP9.98□□□□□ -0.81
NPHP4-209ENST00000489180 KRTAP25-1Q3LHN0 102 aa9.95□□□□□ -0.82
NPHP4-209ENST00000489180 KRTAP13-2Q52LG2 175 aa9.94□□□□□ -0.82
NPHP4-209ENST00000489180 PLAC4Q8WY50 150 aa9.94□□□□□ -0.82
NPHP4-209ENST00000489180 KRTAP13-1Q8IUC0 172 aa9.9□□□□□ -0.82
NPHP4-209ENST00000489180 VCANP13611 3396 aa9.9□□□□□ -0.83
NPHP4-209ENST00000489180 STAB2Q8WWQ8 2551 aa9.85□□□□□ -0.83
NPHP4-209ENST00000489180 BAHCC1Q9P281 2608 aa9.85□□□□□ -0.83
NPHP4-209ENST00000489180 A8MUU9 505 aa9.84□□□□□ -0.83
NPHP4-209ENST00000489180 LAMA1P25391 3075 aa9.83□□□□□ -0.84
NPHP4-209ENST00000489180 RPS29P62273 56 aaKnown RBP9.83□□□□□ -0.84
NPHP4-209ENST00000489180 NBEAQ8NFP9 2946 aa9.82□□□□□ -0.84
NPHP4-209ENST00000489180 SZT2Q5T011 3432 aa9.82□□□□□ -0.84
NPHP4-209ENST00000489180 ITPR2Q14571 2701 aa9.78□□□□□ -0.84
NPHP4-209ENST00000489180 ITPR1Q14643 2758 aa9.78□□□□□ -0.84
NPHP4-209ENST00000489180 LRBAP50851 2863 aa9.78□□□□□ -0.84
NPHP4-209ENST00000489180 DMXL2Q8TDJ6 3036 aa9.77□□□□□ -0.85
NPHP4-209ENST00000489180 TACC2O95359 2948 aa9.76□□□□□ -0.85
NPHP4-209ENST00000489180 KRTAP16-1A8MUX0 517 aa9.76□□□□□ -0.85
NPHP4-209ENST00000489180 COL6A3P12111 3177 aa9.76□□□□□ -0.85
NPHP4-209ENST00000489180 ATMQ13315 3056 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms