RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 PRR26Q8N8Z3 221 aa9.65□□□□□ -0.86
HLA-DQB1-209ENST00000487676 UNC79Q9P2D8 2635 aa9.64□□□□□ -0.87
HLA-DQB1-209ENST00000487676 LOC400499M0QZD8 3231 aa9.63□□□□□ -0.87
HLA-DQB1-209ENST00000487676 CASC10Q5T4H9 136 aa9.63□□□□□ -0.87
HLA-DQB1-209ENST00000487676 IGKV2D-30A0A075B6S6 120 aa9.62□□□□□ -0.87
HLA-DQB1-209ENST00000487676 IGKV2-30P06310 120 aa9.62□□□□□ -0.87
HLA-DQB1-209ENST00000487676 IGLV8-61A0A075B6I0 122 aa9.61□□□□□ -0.87
HLA-DQB1-209ENST00000487676 MMP24-AS1A0A0U1RRL7 71 aa9.61□□□□□ -0.87
HLA-DQB1-209ENST00000487676 KRTAP26-1Q6PEX3 210 aa9.61□□□□□ -0.87
HLA-DQB1-209ENST00000487676 FAM229AH3BQW9 127 aa9.6□□□□□ -0.87
HLA-DQB1-209ENST00000487676 KRTAP1-3Q8IUG1 177 aa9.6□□□□□ -0.87
HLA-DQB1-209ENST00000487676 ITPR3Q14573 2671 aa9.59□□□□□ -0.87
HLA-DQB1-209ENST00000487676 SPINK7P58062 85 aa9.59□□□□□ -0.87
HLA-DQB1-209ENST00000487676 LINC01554Q52M75 96 aa9.59□□□□□ -0.87
HLA-DQB1-209ENST00000487676 LINC00472Q9H8W2 130 aa9.58□□□□□ -0.88
HLA-DQB1-209ENST00000487676 SETXQ7Z333 2677 aaKnown RBP9.58□□□□□ -0.88
HLA-DQB1-209ENST00000487676 KRTAP29-1A8MX34 341 aaPredicted RBP9.58□□□□□ -0.88
HLA-DQB1-209ENST00000487676 ATMQ13315 3056 aa9.57□□□□□ -0.88
HLA-DQB1-209ENST00000487676 KRTAP4-16G5E9R7 235 aaPredicted RBP9.57□□□□□ -0.88
HLA-DQB1-209ENST00000487676 HRES1P13985 223 aa9.56□□□□□ -0.88
HLA-DQB1-209ENST00000487676 LINC00313P59037 77 aa9.56□□□□□ -0.88
HLA-DQB1-209ENST00000487676 PRAC1Q96KF2 57 aa9.56□□□□□ -0.88
HLA-DQB1-209ENST00000487676 C9orf163Q8N9P6 203 aa9.55□□□□□ -0.88
HLA-DQB1-209ENST00000487676 A8MU10 97 aa9.54□□□□□ -0.88
HLA-DQB1-209ENST00000487676 A6NN06 94 aa9.53□□□□□ -0.88
HLA-DQB1-209ENST00000487676 LY6G6CO95867 125 aa9.53□□□□□ -0.88
HLA-DQB1-209ENST00000487676 WDFY3Q8IZQ1 3526 aa9.51□□□□□ -0.89
HLA-DQB1-209ENST00000487676 TEX15Q9BXT5 2789 aa9.51□□□□□ -0.89
HLA-DQB1-209ENST00000487676 KRTAP1-1Q07627 177 aa9.49□□□□□ -0.89
HLA-DQB1-209ENST00000487676 SPRR1BP22528 89 aa9.49□□□□□ -0.89
HLA-DQB1-209ENST00000487676 DMXL1Q9Y485 3027 aa9.48□□□□□ -0.89
HLA-DQB1-209ENST00000487676 H3BS24 57 aa9.47□□□□□ -0.89
HLA-DQB1-209ENST00000487676 HELZ2Q9BYK8 2649 aaKnown RBP9.46□□□□□ -0.89
HLA-DQB1-209ENST00000487676 HRNRQ86YZ3 2850 aaPredicted RBP9.45□□□□□ -0.9
HLA-DQB1-209ENST00000487676 DCHS1Q96JQ0 3298 aa9.45□□□□□ -0.9
HLA-DQB1-209ENST00000487676 KRTAP10-11P60412 298 aa9.44□□□□□ -0.9
HLA-DQB1-209ENST00000487676 IGLV5-52A0A0A0MRZ9 124 aa9.43□□□□□ -0.9
HLA-DQB1-209ENST00000487676 NUPR2A6NF83 97 aa9.43□□□□□ -0.9
HLA-DQB1-209ENST00000487676 ASH1LQ9NR48 2969 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB1-209ENST00000487676 STAB1Q9NY15 2570 aa9.42□□□□□ -0.9
HLA-DQB1-209ENST00000487676 Q6ZR54 194 aa9.39□□□□□ -0.91
HLA-DQB1-209ENST00000487676 NBDYA0A0U1RRE5 68 aa9.38□□□□□ -0.91
HLA-DQB1-209ENST00000487676 ZNF861PO60384 105 aa9.38□□□□□ -0.91
HLA-DQB1-209ENST00000487676 ASB16-AS1Q495Z4 193 aa9.36□□□□□ -0.91
HLA-DQB1-209ENST00000487676 ANAPC11Q9NYG5 84 aa9.36□□□□□ -0.91
HLA-DQB1-209ENST00000487676 SPACA4Q8TDM5 124 aa9.36□□□□□ -0.91
HLA-DQB1-209ENST00000487676 SSBP3-AS1Q7Z2R9 100 aa9.35□□□□□ -0.91
HLA-DQB1-209ENST00000487676 COL12A1Q99715 3063 aa9.35□□□□□ -0.91
HLA-DQB1-209ENST00000487676 CFAP46Q8IYW2 2715 aa9.34□□□□□ -0.91
HLA-DQB1-209ENST00000487676 FLNCQ14315 2725 aa9.32□□□□□ -0.92
HLA-DQB1-209ENST00000487676 RTL8CO15255 209 aa9.32□□□□□ -0.92
HLA-DQB1-209ENST00000487676 CSAG1Q6PB30 78 aa9.32□□□□□ -0.92
HLA-DQB1-209ENST00000487676 ZANQ9Y493 2812 aa9.3□□□□□ -0.92
HLA-DQB1-209ENST00000487676 TEP1Q99973 2627 aaKnown RBP9.29□□□□□ -0.92
HLA-DQB1-209ENST00000487676 PSORS1C2Q9UIG4 136 aa9.29□□□□□ -0.92
HLA-DQB1-209ENST00000487676 PLA2G1BP04054 148 aaKnown RBP9.28□□□□□ -0.92
HLA-DQB1-209ENST00000487676 ZFHX4Q86UP3 3567 aa9.28□□□□□ -0.92
HLA-DQB1-209ENST00000487676 UTP20O75691 2785 aaKnown RBP9.27□□□□□ -0.93
HLA-DQB1-209ENST00000487676 KRTAP7-1Q8IUC3 87 aa9.26□□□□□ -0.93
HLA-DQB1-209ENST00000487676 Q96NJ1 140 aa9.25□□□□□ -0.93
HLA-DQB1-209ENST00000487676 DMAC1Q96GE9 116 aa9.24□□□□□ -0.93
HLA-DQB1-209ENST00000487676 KRTAP24-1Q3LI83 254 aa9.24□□□□□ -0.93
HLA-DQB1-209ENST00000487676 C1orf134Q5TEV5 83 aa9.24□□□□□ -0.93
HLA-DQB1-209ENST00000487676 SPINT4Q6UDR6 99 aa9.24□□□□□ -0.93
HLA-DQB1-209ENST00000487676 BAHCC1Q9P281 2608 aa9.23□□□□□ -0.93
HLA-DQB1-209ENST00000487676 SPATA8Q6RVD6 105 aa9.22□□□□□ -0.93
HLA-DQB1-209ENST00000487676 Q5W150 140 aa9.22□□□□□ -0.93
HLA-DQB1-209ENST00000487676 APCP25054 2843 aa9.21□□□□□ -0.93
HLA-DQB1-209ENST00000487676 K7EIL1 84 aa9.2□□□□□ -0.94
HLA-DQB1-209ENST00000487676 CSMD1Q96PZ7 3565 aa9.2□□□□□ -0.94
HLA-DQB1-209ENST00000487676 NOTCH1P46531 2555 aa9.19□□□□□ -0.94
HLA-DQB1-209ENST00000487676 IGSF10Q6WRI0 2623 aa9.19□□□□□ -0.94
HLA-DQB1-209ENST00000487676 DCHS2Q6V1P9 2916 aa9.18□□□□□ -0.94
HLA-DQB1-209ENST00000487676 IGLV7-43P04211 117 aa9.18□□□□□ -0.94
HLA-DQB1-209ENST00000487676 UBR5O95071 2799 aaPredicted RBP9.18□□□□□ -0.94
HLA-DQB1-209ENST00000487676 A0A087WTM6 91 aa9.16□□□□□ -0.94
HLA-DQB1-209ENST00000487676 ADM2Q7Z4H4 148 aa9.16□□□□□ -0.94
HLA-DQB1-209ENST00000487676 Q8N1X5 172 aa9.16□□□□□ -0.94
HLA-DQB1-209ENST00000487676 WWC2-AS2Q96NR7 200 aa9.15□□□□□ -0.94
HLA-DQB1-209ENST00000487676 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.15□□□□□ -0.94
HLA-DQB1-209ENST00000487676 SMG1Q96Q15 3661 aaKnown RBP9.15□□□□□ -0.94
HLA-DQB1-209ENST00000487676 FBN2P35556 2912 aa9.15□□□□□ -0.95
HLA-DQB1-209ENST00000487676 APLNQ9ULZ1 77 aa9.14□□□□□ -0.95
HLA-DQB1-209ENST00000487676 ASPMQ8IZT6 3477 aa9.13□□□□□ -0.95
HLA-DQB1-209ENST00000487676 TYMSOSQ8TAI1 123 aa9.11□□□□□ -0.95
HLA-DQB1-209ENST00000487676 COL6A5A8TX70 2615 aa9.11□□□□□ -0.95
HLA-DQB1-209ENST00000487676 KRTAP1-5Q9BYS1 174 aa9.1□□□□□ -0.95
HLA-DQB1-209ENST00000487676 NBEAL1Q6ZS30 2694 aa9.1□□□□□ -0.95
HLA-DQB1-209ENST00000487676 LINC00483Q53H64 154 aa9.1□□□□□ -0.95
HLA-DQB1-209ENST00000487676 A0A1B0GU33 70 aa9.1□□□□□ -0.95
HLA-DQB1-209ENST00000487676 A0A087X002 238 aa9.09□□□□□ -0.95
HLA-DQB1-209ENST00000487676 NOTCH2NLQ7Z3S9 236 aa9.09□□□□□ -0.95
HLA-DQB1-209ENST00000487676 NF1P21359 2839 aa9.09□□□□□ -0.95
HLA-DQB1-209ENST00000487676 KRTAP11-1Q8IUC1 163 aa9.06□□□□□ -0.96
HLA-DQB1-209ENST00000487676 MXRA5Q9NR99 2828 aa9.06□□□□□ -0.96
HLA-DQB1-209ENST00000487676 PLAC8Q9NZF1 115 aa9.06□□□□□ -0.96
HLA-DQB1-209ENST00000487676 CELSR2Q9HCU4 2923 aa9.03□□□□□ -0.96
HLA-DQB1-209ENST00000487676 CRIPTQ9P021 101 aa9□□□□□ -0.97
HLA-DQB1-209ENST00000487676 RELNP78509 3460 aa9□□□□□ -0.97
HLA-DQB1-209ENST00000487676 DMDP11532 3685 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms