RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SMIM29Q86T20 159 aa9.09□□□□□ -0.95
UPF3A-208ENST00000484246 hADV29S1A0JD25 119 aa9.08□□□□□ -0.96
UPF3A-208ENST00000484246 PRO1854Q9UHT4 67 aa9.08□□□□□ -0.96
UPF3A-208ENST00000484246 Q8N377 158 aa9.07□□□□□ -0.96
UPF3A-208ENST00000484246 DEFB105AQ8NG35 78 aa9.07□□□□□ -0.96
UPF3A-208ENST00000484246 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.06□□□□□ -0.96
UPF3A-208ENST00000484246 H7C2G1 150 aa9.05□□□□□ -0.96
UPF3A-208ENST00000484246 Q1RN00 199 aa9.05□□□□□ -0.96
UPF3A-208ENST00000484246 Q6ZQY7 126 aa9.05□□□□□ -0.96
UPF3A-208ENST00000484246 FP248Q71RG6 208 aaPredicted RBP9.05□□□□□ -0.96
UPF3A-208ENST00000484246 H0YGX0 51 aa9.04□□□□□ -0.96
UPF3A-208ENST00000484246 PPDPFLQ8WWR9 84 aa9.04□□□□□ -0.96
UPF3A-208ENST00000484246 RETNLBQ9BQ08 111 aa9.04□□□□□ -0.96
UPF3A-208ENST00000484246 CD164Q04900 197 aa9.03□□□□□ -0.96
UPF3A-208ENST00000484246 PRO1933Q9H354 126 aa9.03□□□□□ -0.96
UPF3A-208ENST00000484246 A0A1B0GX51 115 aa9.01□□□□□ -0.97
UPF3A-208ENST00000484246 TPRXLQ17RH7 258 aa9.01□□□□□ -0.97
UPF3A-208ENST00000484246 LPAP08519 4548 aa9.01□□□□□ -0.97
UPF3A-208ENST00000484246 IGLV7-46A0A075B6I9 117 aa9□□□□□ -0.97
UPF3A-208ENST00000484246 IGLV8-61A0A075B6I0 122 aa8.99□□□□□ -0.97
UPF3A-208ENST00000484246 OCIAD2Q56VL3 154 aa8.99□□□□□ -0.97
UPF3A-208ENST00000484246 FAM218AQ96MZ4 157 aa8.99□□□□□ -0.97
UPF3A-208ENST00000484246 K7ERJ3 54 aa8.98□□□□□ -0.97
UPF3A-208ENST00000484246 TRIAP1O43715 76 aa8.98□□□□□ -0.97
UPF3A-208ENST00000484246 SNCGO76070 127 aa8.98□□□□□ -0.97
UPF3A-208ENST00000484246 LIMD2Q9BT23 127 aa8.98□□□□□ -0.97
UPF3A-208ENST00000484246 LOC105371267A0A1B0GV96 52 aa8.97□□□□□ -0.97
UPF3A-208ENST00000484246 Q5XG85 94 aa8.97□□□□□ -0.97
UPF3A-208ENST00000484246 F8WEM9 126 aa8.96□□□□□ -0.98
UPF3A-208ENST00000484246 Q6JHZ5 121 aa8.95□□□□□ -0.98
UPF3A-208ENST00000484246 M0R143 59 aa8.93□□□□□ -0.98
UPF3A-208ENST00000484246 COX6CP09669 75 aa8.91□□□□□ -0.98
UPF3A-208ENST00000484246 CLEC2BQ92478 149 aa8.91□□□□□ -0.98
UPF3A-208ENST00000484246 PSMB2P49721 201 aa8.9□□□□□ -0.98
UPF3A-208ENST00000484246 KRTAP13-3Q3SY46 172 aa8.9□□□□□ -0.98
UPF3A-208ENST00000484246 HRCT1Q6UXD1 115 aa8.9□□□□□ -0.98
UPF3A-208ENST00000484246 SNHG12Q9BXW3 62 aa8.9□□□□□ -0.98
UPF3A-208ENST00000484246 TSTD3H0UI37 97 aa8.89□□□□□ -0.99
UPF3A-208ENST00000484246 A0A0G2JQZ4 141 aa8.88□□□□□ -0.99
UPF3A-208ENST00000484246 IGFL1Q6UW32 110 aa8.88□□□□□ -0.99
UPF3A-208ENST00000484246 H3BQ85 93 aa8.87□□□□□ -0.99
UPF3A-208ENST00000484246 CDIP1Q9H305 208 aa8.87□□□□□ -0.99
UPF3A-208ENST00000484246 DNAL4O96015 105 aa8.85□□□□□ -0.99
UPF3A-208ENST00000484246 NDUFV3P56181 108 aaKnown RBP8.85□□□□□ -0.99
UPF3A-208ENST00000484246 KRTAP4-8Q9BYQ9 185 aa8.85□□□□□ -0.99
UPF3A-208ENST00000484246 TRACP01848 142 aa8.84□□□□□ -0.99
UPF3A-208ENST00000484246 TRBV7-7A0A0K0K1E9 115 aa8.83□□□□□ -1
UPF3A-208ENST00000484246 H3BUT2 72 aa8.83□□□□□ -1
UPF3A-208ENST00000484246 ASB16-AS1Q495Z4 193 aa8.83□□□□□ -1
UPF3A-208ENST00000484246 ORMDL1Q9P0S3 153 aa8.83□□□□□ -1
UPF3A-208ENST00000484246 LST1O00453 97 aa8.82□□□□□ -1
UPF3A-208ENST00000484246 TCL1BO95988 128 aa8.82□□□□□ -1
UPF3A-208ENST00000484246 Q6Q795 121 aa8.82□□□□□ -1
UPF3A-208ENST00000484246 C1orf195Q5TG92 126 aa8.81□□□□□ -1
UPF3A-208ENST00000484246 FABP2P12104 132 aa8.8□□□□□ -1
UPF3A-208ENST00000484246 H3BMG7 143 aa8.79□□□□□ -1
UPF3A-208ENST00000484246 TMEM256-PLSCR3K7ERE1 68 aa8.79□□□□□ -1
UPF3A-208ENST00000484246 SCGB1C2P0DMR2 95 aa8.79□□□□□ -1
UPF3A-208ENST00000484246 MUC17Q685J3 4493 aa8.79□□□□□ -1
UPF3A-208ENST00000484246 UBE2V1Q13404 147 aa8.77□□□□□ -1.01
UPF3A-208ENST00000484246 TEN1Q86WV5 123 aa8.76□□□□□ -1.01
UPF3A-208ENST00000484246 KRTAP9-2Q9BYQ4 174 aa8.76□□□□□ -1.01
UPF3A-208ENST00000484246 SS18L2Q9UHA2 77 aa8.73□□□□□ -1.01
UPF3A-208ENST00000484246 LYRM7Q5U5X0 104 aa8.72□□□□□ -1.01
UPF3A-208ENST00000484246 A0A1W2PNM2 257 aa8.71□□□□□ -1.02
UPF3A-208ENST00000484246 ATXN8Q156A1 80 aa8.71□□□□□ -1.02
UPF3A-208ENST00000484246 NAA38Q9BRA0 125 aaKnown RBP8.7□□□□□ -1.02
UPF3A-208ENST00000484246 MUC2Q02817 5179 aa8.7□□□□□ -1.02
UPF3A-208ENST00000484246 TRBV7-4A0A0J9YYF1 115 aa8.69□□□□□ -1.02
UPF3A-208ENST00000484246 BATFQ16520 125 aa8.69□□□□□ -1.02
UPF3A-208ENST00000484246 ANKRD29Q8N6D5 301 aa8.69□□□□□ -1.02
UPF3A-208ENST00000484246 SEC61BP60468 96 aaKnown RBP8.68□□□□□ -1.02
UPF3A-208ENST00000484246 TRBV20-1A0A075B6N2 111 aa8.67□□□□□ -1.02
UPF3A-208ENST00000484246 A0A087WSZ3 146 aa8.67□□□□□ -1.02
UPF3A-208ENST00000484246 BAALC-AS2P0C853 105 aa8.67□□□□□ -1.02
UPF3A-208ENST00000484246 FAT4Q6V0I7 4981 aa8.67□□□□□ -1.02
UPF3A-208ENST00000484246 KRTAP4-12Q9BQ66 201 aa8.66□□□□□ -1.02
UPF3A-208ENST00000484246 C9orf118A6NHY6 69 aa8.65□□□□□ -1.02
UPF3A-208ENST00000484246 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.65□□□□□ -1.02
UPF3A-208ENST00000484246 TAX1BP3O14907 124 aa8.65□□□□□ -1.02
UPF3A-208ENST00000484246 KRTAP9-6A0A140TA67 174 aa8.64□□□□□ -1.03
UPF3A-208ENST00000484246 C9orf92A6NGG3 77 aa8.64□□□□□ -1.03
UPF3A-208ENST00000484246 RBM3P98179 157 aaKnown RBP8.64□□□□□ -1.03
UPF3A-208ENST00000484246 KRTAP19-1Q8IUB9 90 aa8.63□□□□□ -1.03
UPF3A-208ENST00000484246 A0A1B0GV72 72 aa8.62□□□□□ -1.03
UPF3A-208ENST00000484246 CCKP06307 115 aa8.62□□□□□ -1.03
UPF3A-208ENST00000484246 Q96NJ1 140 aa8.62□□□□□ -1.03
UPF3A-208ENST00000484246 DSCR8Q96T75 97 aa8.61□□□□□ -1.03
UPF3A-208ENST00000484246 A0A0U1RQV1 116 aa8.6□□□□□ -1.03
UPF3A-208ENST00000484246 A0A1W2PPM0 123 aa8.6□□□□□ -1.03
UPF3A-208ENST00000484246 JMJD7-PLA2G4BH0Y9G9 81 aa8.59□□□□□ -1.03
UPF3A-208ENST00000484246 C21orf62-AS1Q17RA5 79 aa8.58□□□□□ -1.04
UPF3A-208ENST00000484246 C9JAW5 83 aa8.57□□□□□ -1.04
UPF3A-208ENST00000484246 RPL37P61927 97 aaKnown RBP8.57□□□□□ -1.04
UPF3A-208ENST00000484246 LOC110117498A0A087WWA1 95 aa8.56□□□□□ -1.04
UPF3A-208ENST00000484246 OBSCN-AS1Q96MR7 158 aa8.56□□□□□ -1.04
UPF3A-208ENST00000484246 H3BT86 120 aa8.55□□□□□ -1.04
UPF3A-208ENST00000484246 A0A1B0GW54 56 aa8.54□□□□□ -1.04
UPF3A-208ENST00000484246 PDE6GP18545 87 aa8.54□□□□□ -1.04
UPF3A-208ENST00000484246 COL5A1-AS1Q5SY13 56 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms