RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TRAV22A0A0B4J277 110 aa8.49□□□□□ -1.05
USP40-214ENST00000483519 PSPHP1O15172 72 aa8.48□□□□□ -1.05
USP40-214ENST00000483519 KRTAP10-11P60412 298 aa8.48□□□□□ -1.05
USP40-214ENST00000483519 PRR4Q16378 134 aa8.48□□□□□ -1.05
USP40-214ENST00000483519 DNAH10OSP0CZ25 163 aa8.47□□□□□ -1.05
USP40-214ENST00000483519 REG3GQ6UW15 175 aa8.46□□□□□ -1.06
USP40-214ENST00000483519 KRTAP7-1Q8IUC3 87 aa8.45□□□□□ -1.06
USP40-214ENST00000483519 DEFB131BA0A096LNP1 70 aa8.45□□□□□ -1.06
USP40-214ENST00000483519 IGFL1Q6UW32 110 aa8.45□□□□□ -1.06
USP40-214ENST00000483519 WFDC13Q8IUB5 93 aa8.45□□□□□ -1.06
USP40-214ENST00000483519 PKD1L1Q8TDX9 2849 aa8.44□□□□□ -1.06
USP40-214ENST00000483519 TRRAPQ9Y4A5 3859 aa8.44□□□□□ -1.06
USP40-214ENST00000483519 B9D2Q9BPU9 175 aa8.43□□□□□ -1.06
USP40-214ENST00000483519 LINC00208Q96KT6 92 aa8.42□□□□□ -1.06
USP40-214ENST00000483519 NOTCH1P46531 2555 aa8.42□□□□□ -1.06
USP40-214ENST00000483519 H3BPC8 53 aa8.42□□□□□ -1.06
USP40-214ENST00000483519 DEFB116Q30KQ4 102 aa8.42□□□□□ -1.06
USP40-214ENST00000483519 A0A087WSZ3 146 aa8.41□□□□□ -1.06
USP40-214ENST00000483519 SPANXA2-OT1Q8N9U9 137 aa8.41□□□□□ -1.06
USP40-214ENST00000483519 DNHD1Q96M86 4753 aa8.41□□□□□ -1.06
USP40-214ENST00000483519 K7EIL1 84 aa8.41□□□□□ -1.06
USP40-214ENST00000483519 IGLV8-61A0A075B6I0 122 aa8.4□□□□□ -1.06
USP40-214ENST00000483519 PRB2P02812 416 aaPredicted RBP8.4□□□□□ -1.06
USP40-214ENST00000483519 A8MUN3 132 aa8.4□□□□□ -1.06
USP40-214ENST00000483519 A0A0G2JQZ4 141 aa8.39□□□□□ -1.07
USP40-214ENST00000483519 A0A1W2PNN7 141 aa8.39□□□□□ -1.07
USP40-214ENST00000483519 NBEAL1Q6ZS30 2694 aa8.39□□□□□ -1.07
USP40-214ENST00000483519 KRTAP29-1A8MX34 341 aaPredicted RBP8.38□□□□□ -1.07
USP40-214ENST00000483519 H0Y9P7 68 aa8.38□□□□□ -1.07
USP40-214ENST00000483519 CASC10Q5T4H9 136 aa8.38□□□□□ -1.07
USP40-214ENST00000483519 CASC2Q6XLA1 102 aa8.37□□□□□ -1.07
USP40-214ENST00000483519 RPL37AP61513 92 aaKnown RBP8.36□□□□□ -1.07
USP40-214ENST00000483519 Q5VV11 94 aa8.36□□□□□ -1.07
USP40-214ENST00000483519 LIMD2Q9BT23 127 aa8.36□□□□□ -1.07
USP40-214ENST00000483519 LINC00588Q9Y4M8 146 aa8.36□□□□□ -1.07
USP40-214ENST00000483519 CMYA5Q8N3K9 4069 aa8.35□□□□□ -1.07
USP40-214ENST00000483519 PRLHP81277 87 aa8.35□□□□□ -1.07
USP40-214ENST00000483519 UBE2AP49459 152 aa8.34□□□□□ -1.07
USP40-214ENST00000483519 Q8N9P0 234 aaPredicted RBP8.33□□□□□ -1.08
USP40-214ENST00000483519 A8MWP4 228 aa8.32□□□□□ -1.08
USP40-214ENST00000483519 CNBPP62633 177 aaKnown RBP8.31□□□□□ -1.08
USP40-214ENST00000483519 CHKB-CPT1BH3BT56 60 aa8.31□□□□□ -1.08
USP40-214ENST00000483519 FBN3Q75N90 2809 aa8.3□□□□□ -1.08
USP40-214ENST00000483519 C9orf163Q8N9P6 203 aa8.3□□□□□ -1.08
USP40-214ENST00000483519 C16orf90A8MZG2 172 aa8.29□□□□□ -1.08
USP40-214ENST00000483519 PRR15LQ9BU68 103 aa8.29□□□□□ -1.08
USP40-214ENST00000483519 A0A096LNI7 61 aa8.28□□□□□ -1.08
USP40-214ENST00000483519 LINC00472Q9H8W2 130 aa8.28□□□□□ -1.08
USP40-214ENST00000483519 IGKV2-24A0A0C4DH68 120 aa8.27□□□□□ -1.09
USP40-214ENST00000483519 SPRR1BP22528 89 aa8.26□□□□□ -1.09
USP40-214ENST00000483519 Q75L30 129 aa8.26□□□□□ -1.09
USP40-214ENST00000483519 DNAH3Q8TD57 4116 aa8.26□□□□□ -1.09
USP40-214ENST00000483519 PLA2G1BP04054 148 aaKnown RBP8.25□□□□□ -1.09
USP40-214ENST00000483519 A8MU10 97 aa8.25□□□□□ -1.09
USP40-214ENST00000483519 COA5Q86WW8 74 aa8.24□□□□□ -1.09
USP40-214ENST00000483519 IGLV7-46A0A075B6I9 117 aa8.23□□□□□ -1.09
USP40-214ENST00000483519 H0Y9J4 135 aa8.23□□□□□ -1.09
USP40-214ENST00000483519 TENM3Q9P273 2699 aa8.23□□□□□ -1.09
USP40-214ENST00000483519 KTN1-AS1Q86SY8 53 aa8.23□□□□□ -1.09
USP40-214ENST00000483519 MEGF8Q7Z7M0 2845 aa8.23□□□□□ -1.09
USP40-214ENST00000483519 MMP24-AS1A0A0U1RRL7 71 aa8.22□□□□□ -1.09
USP40-214ENST00000483519 LOC101927531A0A1B0GV80 90 aa8.22□□□□□ -1.09
USP40-214ENST00000483519 A6NED7 52 aa8.2□□□□□ -1.1
USP40-214ENST00000483519 ATP11AUNQ6ZP68 121 aa8.2□□□□□ -1.1
USP40-214ENST00000483519 TP53AIP1Q9HCN2 124 aa8.19□□□□□ -1.1
USP40-214ENST00000483519 SPTSSBQ8NFR3 76 aa8.18□□□□□ -1.1
USP40-214ENST00000483519 PHF5AQ7RTV0 110 aaKnown RBP8.18□□□□□ -1.1
USP40-214ENST00000483519 NDUFS5O43920 106 aa8.17□□□□□ -1.1
USP40-214ENST00000483519 MOBPQ13875 183 aa8.16□□□□□ -1.1
USP40-214ENST00000483519 LCA10Q71F78 164 aa8.16□□□□□ -1.1
USP40-214ENST00000483519 KRTAP11-1Q8IUC1 163 aa8.16□□□□□ -1.1
USP40-214ENST00000483519 DNAH1Q9P2D7 4330 aa8.15□□□□□ -1.1
USP40-214ENST00000483519 PCOTHQ58A44 107 aa8.15□□□□□ -1.1
USP40-214ENST00000483519 C14orf177Q52M58 125 aa8.14□□□□□ -1.11
USP40-214ENST00000483519 CDC42SE1Q9NRR8 79 aa8.14□□□□□ -1.11
USP40-214ENST00000483519 ASB16-AS1Q495Z4 193 aa8.13□□□□□ -1.11
USP40-214ENST00000483519 CHTF8P0CG12 524 aa8.13□□□□□ -1.11
USP40-214ENST00000483519 LINC01558Q9Y6Z2 57 aa8.13□□□□□ -1.11
USP40-214ENST00000483519 Q6ZR54 194 aa8.12□□□□□ -1.11
USP40-214ENST00000483519 WWC2-AS2Q96NR7 200 aa8.12□□□□□ -1.11
USP40-214ENST00000483519 KRTAP1-5Q9BYS1 174 aa8.1□□□□□ -1.11
USP40-214ENST00000483519 C8orf17Q9NRJ1 99 aa8.1□□□□□ -1.11
USP40-214ENST00000483519 SPAG11AQ6PDA7 123 aa8.09□□□□□ -1.11
USP40-214ENST00000483519 Q96NJ1 140 aa8.09□□□□□ -1.11
USP40-214ENST00000483519 A6NN06 94 aa8.09□□□□□ -1.11
USP40-214ENST00000483519 PLAC8Q9NZF1 115 aa8.09□□□□□ -1.11
USP40-214ENST00000483519 LINC00313P59037 77 aa8.09□□□□□ -1.12
USP40-214ENST00000483519 PRKDCP78527 4128 aaKnown RBP8.08□□□□□ -1.12
USP40-214ENST00000483519 KRTAP13-1Q8IUC0 172 aa8.06□□□□□ -1.12
USP40-214ENST00000483519 STAB2Q8WWQ8 2551 aa8.05□□□□□ -1.12
USP40-214ENST00000483519 IGLV9-49A0A0B4J1Y8 123 aa8.05□□□□□ -1.12
USP40-214ENST00000483519 A0A1B0GVX0 72 aa8.04□□□□□ -1.12
USP40-214ENST00000483519 CDK2AP2O75956 126 aa8.04□□□□□ -1.12
USP40-214ENST00000483519 HRES1P13985 223 aa8.04□□□□□ -1.12
USP40-214ENST00000483519 ZNF706Q9Y5V0 76 aaPredicted RBP8.04□□□□□ -1.12
USP40-214ENST00000483519 DNAH9Q9NYC9 4486 aa8.03□□□□□ -1.12
USP40-214ENST00000483519 IGHV6-1A0A0B4J1U7 121 aa8.03□□□□□ -1.12
USP40-214ENST00000483519 UBE2DNLQ8IWF7 75 aa8.03□□□□□ -1.12
USP40-214ENST00000483519 NUPR2A6NF83 97 aa8.03□□□□□ -1.12
USP40-214ENST00000483519 TGP01266 2768 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms