RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 Q8NBF4 154 aa6.94□□□□□ -1.3
VPS13D-204ENST00000469054 C9orf153Q5TBE3 101 aa6.93□□□□□ -1.3
VPS13D-204ENST00000469054 SPAG11AQ6PDA7 123 aa6.93□□□□□ -1.3
VPS13D-204ENST00000469054 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-204ENST00000469054 Q6ZQY7 126 aa6.93□□□□□ -1.3
VPS13D-204ENST00000469054 Q8N377 158 aa6.93□□□□□ -1.3
VPS13D-204ENST00000469054 TRIAP1O43715 76 aa6.92□□□□□ -1.3
VPS13D-204ENST00000469054 SNCGO76070 127 aa6.92□□□□□ -1.3
VPS13D-204ENST00000469054 SMIM29Q86T20 159 aa6.92□□□□□ -1.3
VPS13D-204ENST00000469054 H3BS24 57 aa6.91□□□□□ -1.3
VPS13D-204ENST00000469054 PSMB2P49721 201 aa6.91□□□□□ -1.3
VPS13D-204ENST00000469054 FAM218AQ96MZ4 157 aa6.91□□□□□ -1.3
VPS13D-204ENST00000469054 HMCN2Q8NDA2 5059 aa6.91□□□□□ -1.3
VPS13D-204ENST00000469054 A0A1B0GX51 115 aa6.9□□□□□ -1.3
VPS13D-204ENST00000469054 COX6CP09669 75 aa6.9□□□□□ -1.3
VPS13D-204ENST00000469054 SPINK1P00995 79 aa6.88□□□□□ -1.31
VPS13D-204ENST00000469054 OCIAD2Q56VL3 154 aa6.87□□□□□ -1.31
VPS13D-204ENST00000469054 PPDPFLQ8WWR9 84 aa6.87□□□□□ -1.31
VPS13D-204ENST00000469054 CLEC2BQ92478 149 aa6.87□□□□□ -1.31
VPS13D-204ENST00000469054 KRTAP4-8Q9BYQ9 185 aa6.87□□□□□ -1.31
VPS13D-204ENST00000469054 SCGB1C2P0DMR2 95 aa6.85□□□□□ -1.31
VPS13D-204ENST00000469054 F8WEM9 126 aa6.84□□□□□ -1.31
VPS13D-204ENST00000469054 RPS29P62273 56 aaKnown RBP6.84□□□□□ -1.31
VPS13D-204ENST00000469054 BATFQ16520 125 aa6.84□□□□□ -1.31
VPS13D-204ENST00000469054 SNHG12Q9BXW3 62 aa6.84□□□□□ -1.31
VPS13D-204ENST00000469054 PRR4Q16378 134 aa6.83□□□□□ -1.32
VPS13D-204ENST00000469054 DNAL4O96015 105 aa6.82□□□□□ -1.32
VPS13D-204ENST00000469054 RETNLBQ9BQ08 111 aa6.82□□□□□ -1.32
VPS13D-204ENST00000469054 IGLV8-61A0A075B6I0 122 aa6.81□□□□□ -1.32
VPS13D-204ENST00000469054 A0A0G2JQZ4 141 aa6.81□□□□□ -1.32
VPS13D-204ENST00000469054 CD164Q04900 197 aa6.81□□□□□ -1.32
VPS13D-204ENST00000469054 HRCT1Q6UXD1 115 aa6.81□□□□□ -1.32
VPS13D-204ENST00000469054 LST1O00453 97 aa6.8□□□□□ -1.32
VPS13D-204ENST00000469054 TRACP01848 142 aa6.8□□□□□ -1.32
VPS13D-204ENST00000469054 FABP2P12104 132 aa6.8□□□□□ -1.32
VPS13D-204ENST00000469054 Q6JHZ5 121 aa6.8□□□□□ -1.32
VPS13D-204ENST00000469054 NAA38Q9BRA0 125 aaKnown RBP6.8□□□□□ -1.32
VPS13D-204ENST00000469054 ORMDL1Q9P0S3 153 aa6.8□□□□□ -1.32
VPS13D-204ENST00000469054 H3BQ85 93 aa6.79□□□□□ -1.32
VPS13D-204ENST00000469054 NDUFV3P56181 108 aaKnown RBP6.79□□□□□ -1.32
VPS13D-204ENST00000469054 IGFL1Q6UW32 110 aa6.78□□□□□ -1.32
VPS13D-204ENST00000469054 LIMD2Q9BT23 127 aa6.78□□□□□ -1.32
VPS13D-204ENST00000469054 H3BUT2 72 aa6.77□□□□□ -1.33
VPS13D-204ENST00000469054 TMEM256-PLSCR3K7ERE1 68 aa6.77□□□□□ -1.33
VPS13D-204ENST00000469054 LPAP08519 4548 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 IGLV7-46A0A075B6I9 117 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 H3BMG7 143 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 TCL1BO95988 128 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 ATXN8Q156A1 80 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 FP248Q71RG6 208 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-204ENST00000469054 KRTAP9-2Q9BYQ4 174 aa6.76□□□□□ -1.33
VPS13D-204ENST00000469054 C9orf118A6NHY6 69 aa6.75□□□□□ -1.33
VPS13D-204ENST00000469054 TAX1BP3O14907 124 aa6.75□□□□□ -1.33
VPS13D-204ENST00000469054 LYRM7Q5U5X0 104 aa6.75□□□□□ -1.33
VPS13D-204ENST00000469054 Q5XG85 94 aa6.75□□□□□ -1.33
VPS13D-204ENST00000469054 LRP2P98164 4655 aa6.75□□□□□ -1.33
VPS13D-204ENST00000469054 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-204ENST00000469054 UBE2V1Q13404 147 aa6.73□□□□□ -1.33
VPS13D-204ENST00000469054 TRBV20-1A0A075B6N2 111 aa6.72□□□□□ -1.33
VPS13D-204ENST00000469054 TRBV7-7A0A0K0K1E9 115 aa6.72□□□□□ -1.33
VPS13D-204ENST00000469054 BAALC-AS2P0C853 105 aa6.72□□□□□ -1.33
VPS13D-204ENST00000469054 KRTAP9-6A0A140TA67 174 aa6.71□□□□□ -1.34
VPS13D-204ENST00000469054 A0A1W2PPM0 123 aa6.7□□□□□ -1.34
VPS13D-204ENST00000469054 PCP4L1A6NKN8 68 aa6.7□□□□□ -1.34
VPS13D-204ENST00000469054 TPRXLQ17RH7 258 aa6.7□□□□□ -1.34
VPS13D-204ENST00000469054 KRTAP4-12Q9BQ66 201 aa6.7□□□□□ -1.34
VPS13D-204ENST00000469054 COL5A1-AS1Q5SY13 56 aa6.69□□□□□ -1.34
VPS13D-204ENST00000469054 Q6Q795 121 aa6.69□□□□□ -1.34
VPS13D-204ENST00000469054 TEN1Q86WV5 123 aa6.69□□□□□ -1.34
VPS13D-204ENST00000469054 ANKRD29Q8N6D5 301 aa6.69□□□□□ -1.34
VPS13D-204ENST00000469054 A0A1B0GV72 72 aa6.68□□□□□ -1.34
VPS13D-204ENST00000469054 KRTAP19-1Q8IUB9 90 aa6.68□□□□□ -1.34
VPS13D-204ENST00000469054 C1orf195Q5TG92 126 aa6.67□□□□□ -1.34
VPS13D-204ENST00000469054 A0A1W2PNM2 257 aa6.66□□□□□ -1.34
VPS13D-204ENST00000469054 RBM3P98179 157 aaKnown RBP6.66□□□□□ -1.34
VPS13D-204ENST00000469054 KRTAP13-3Q3SY46 172 aa6.66□□□□□ -1.34
VPS13D-204ENST00000469054 ASB16-AS1Q495Z4 193 aa6.66□□□□□ -1.34
VPS13D-204ENST00000469054 CDIP1Q9H305 208 aa6.66□□□□□ -1.34
VPS13D-204ENST00000469054 UBR4Q5T4S7 5183 aa6.65□□□□□ -1.34
VPS13D-204ENST00000469054 C9JAW5 83 aa6.65□□□□□ -1.34
VPS13D-204ENST00000469054 A0A087WSZ3 146 aa6.64□□□□□ -1.35
VPS13D-204ENST00000469054 TRBV7-4A0A0J9YYF1 115 aa6.64□□□□□ -1.35
VPS13D-204ENST00000469054 DSCR8Q96T75 97 aa6.63□□□□□ -1.35
VPS13D-204ENST00000469054 SS18L2Q9UHA2 77 aa6.63□□□□□ -1.35
VPS13D-204ENST00000469054 SPCS1Q9Y6A9 102 aa6.63□□□□□ -1.35
VPS13D-204ENST00000469054 JMJD7-PLA2G4BH0Y9G9 81 aa6.62□□□□□ -1.35
VPS13D-204ENST00000469054 CCKP06307 115 aa6.62□□□□□ -1.35
VPS13D-204ENST00000469054 H3BT86 120 aa6.6□□□□□ -1.35
VPS13D-204ENST00000469054 MTURNQ8N3F0 131 aa6.58□□□□□ -1.36
VPS13D-204ENST00000469054 OBSCN-AS1Q96MR7 158 aa6.58□□□□□ -1.36
VPS13D-204ENST00000469054 VPS25Q9BRG1 176 aa6.58□□□□□ -1.36
VPS13D-204ENST00000469054 MUC17Q685J3 4493 aa6.58□□□□□ -1.36
VPS13D-204ENST00000469054 LOC110117498A0A087WWA1 95 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 C9orf92A6NGG3 77 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 K7EP34 96 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 PDE6GP18545 87 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 Q6ZQT0 140 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 Q96NJ1 140 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 C14orf132Q9NPU4 83 aa6.56□□□□□ -1.36
VPS13D-204ENST00000469054 LCE3BQ5TA77 95 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms