RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 CNBPP62633 177 aaKnown RBP2.27□□□□□ -2.05
SYNE1-218ENST00000468937 MEIG1Q5JSS6 88 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 ARL17AQ8IVW1 177 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 DAND5Q8N907 189 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 ST20-AS1Q8NBB2 130 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 CARD19Q96LW7 228 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 LRP1Q07954 4544 aaKnown RBP2.27□□□□□ -2.05
SYNE1-218ENST00000468937 NDUFC2-KCTD14E9PQ53 114 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 M0R143 59 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 IFITM1P13164 125 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 HINT1P49773 126 aaPredicted RBP2.26□□□□□ -2.05
SYNE1-218ENST00000468937 LINC00158P58513 81 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 CIRBPQ14011 172 aaKnown RBP2.26□□□□□ -2.05
SYNE1-218ENST00000468937 SPINT4Q6UDR6 99 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 MUSTN1Q8IVN3 82 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 Q8N814 137 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 C9orf163Q8N9P6 203 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 Q8NDZ9 215 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 LINC00308Q8TCZ7 52 aa2.26□□□□□ -2.05
SYNE1-218ENST00000468937 ZCCHC13Q8WW36 166 aaKnown RBP2.26□□□□□ -2.05
SYNE1-218ENST00000468937 NDUFC2O95298 119 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 P0C880 135 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 NPC2P61916 151 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 CIRBP-AS1Q8TBR5 109 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 SND1-IT1Q9HBX3 110 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 NHP2Q9NX24 153 aaKnown RBP2.25□□□□□ -2.05
SYNE1-218ENST00000468937 TNXBP22105 4242 aa2.25□□□□□ -2.05
SYNE1-218ENST00000468937 HMCN2Q8NDA2 5059 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 A0A096LNI7 61 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.24□□□□□ -2.05
SYNE1-218ENST00000468937 A0A0B4J2C4 111 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 LOC107984640A0A0U1RRK4 108 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 A6NDN8 102 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 TSPAN13O95857 204 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 BATFQ16520 125 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 SDIM1Q6ZPB5 146 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 XAGE1AQ9HD64 81 aa2.24□□□□□ -2.05
SYNE1-218ENST00000468937 TRBV10-2A0A0K0K1G8 114 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 K7ERJ3 54 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 TAX1BP3O14907 124 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 FUSP35637 526 aaKnown RBP eCLIP2.23□□□□□ -2.05
SYNE1-218ENST00000468937 PRR3P79522 188 aaKnown RBP2.23□□□□□ -2.05
SYNE1-218ENST00000468937 RPL18AQ02543 176 aaKnown RBP2.23□□□□□ -2.05
SYNE1-218ENST00000468937 COL5A1-AS1Q5SY13 56 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 LINC00337Q8N6G1 96 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 COPS9Q8WXC6 57 aa2.23□□□□□ -2.05
SYNE1-218ENST00000468937 NCR3O14931 201 aa2.22□□□□□ -2.05
SYNE1-218ENST00000468937 Q6ZSA8 131 aa2.22□□□□□ -2.05
SYNE1-218ENST00000468937 RAB37Q96AX2 223 aa2.22□□□□□ -2.05
SYNE1-218ENST00000468937 PRO1854Q9UHT4 67 aa2.22□□□□□ -2.05
SYNE1-218ENST00000468937 TRAV13-2A0A0B4J235 113 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 A0A1W2PNN7 141 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 H3BUT2 72 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 OXTP01178 125 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 IGLV6-57P01721 117 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 C1orf64Q8NEQ6 169 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 SMIM11BQ8TCY0 68 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 SPACA4Q8TDM5 124 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 NAA38Q9BRA0 125 aaKnown RBP2.21□□□□□ -2.06
SYNE1-218ENST00000468937 TMEM126AQ9H061 195 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 PKIGQ9Y2B9 76 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 CBY1Q9Y3M2 126 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 C22orf24Q9Y442 160 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 V9GYY9 64 aa2.21□□□□□ -2.06
SYNE1-218ENST00000468937 RNF213Q63HN8 5207 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 TRBV10-3A0A0K0K1G6 114 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 A0A1B0GV90 55 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 A0A1W2PPM0 123 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 M0R378 163 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 RPL28P46779 137 aaKnown RBP2.2□□□□□ -2.06
SYNE1-218ENST00000468937 FAM19A5Q7Z5A7 132 aaPredicted RBP2.2□□□□□ -2.06
SYNE1-218ENST00000468937 MRPL55Q7Z7F7 128 aaKnown RBP2.2□□□□□ -2.06
SYNE1-218ENST00000468937 OR13C6PQ8NH95 151 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 LINC00474Q9P2X8 69 aa2.2□□□□□ -2.06
SYNE1-218ENST00000468937 H7C2G1 150 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 M0QXV9 152 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 SMR3BP02814 79 aaPredicted RBP2.19□□□□□ -2.06
SYNE1-218ENST00000468937 SPRR1AP35321 89 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 LRP2P98164 4655 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 KRTAP6-3Q3LI67 103 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 C6orf99Q4VX62 202 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 S100A7L2Q5SY68 101 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 PHF5AQ7RTV0 110 aaKnown RBP2.19□□□□□ -2.06
SYNE1-218ENST00000468937 SPANXA2-OT1Q8N9U9 137 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 KCNQ1DNQ9H478 68 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 PLAC8Q9NZF1 115 aa2.19□□□□□ -2.06
SYNE1-218ENST00000468937 TRAV23DV6A0A075B6W5 121 aa2.18□□□□□ -2.06
SYNE1-218ENST00000468937 TRBV7-6A0A0J9YX20 115 aa2.18□□□□□ -2.06
SYNE1-218ENST00000468937 K7EP34 96 aa2.18□□□□□ -2.06
SYNE1-218ENST00000468937 ZNF73O43830 326 aaPredicted RBP2.18□□□□□ -2.06
SYNE1-218ENST00000468937 TCL1BO95988 128 aa2.18□□□□□ -2.06
SYNE1-218ENST00000468937 ELOF1P60002 83 aaKnown RBP2.18□□□□□ -2.06
SYNE1-218ENST00000468937 SCXQ7RTU7 201 aa2.18□□□□□ -2.06
SYNE1-218ENST00000468937 H0YGX0 51 aa2.17□□□□□ -2.06
SYNE1-218ENST00000468937 LST1O00453 97 aa2.17□□□□□ -2.06
SYNE1-218ENST00000468937 COX6CP09669 75 aa2.17□□□□□ -2.06
SYNE1-218ENST00000468937 FABP2P12104 132 aa2.17□□□□□ -2.06
SYNE1-218ENST00000468937 PSMB2P49721 201 aa2.17□□□□□ -2.06
SYNE1-218ENST00000468937 KRTAP10-4P60372 401 aaPredicted RBP2.17□□□□□ -2.06
SYNE1-218ENST00000468937 LYRM7Q5U5X0 104 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 249.4 ms