RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 COL12A1Q99715 3063 aa-0.51□□□□□ -2.49
VPS13A-209ENST00000467124 DYNC1H1Q14204 4646 aaKnown RBP-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 IFI6P09912 130 aa-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 SPRR2AP35326 72 aa-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 APOBP04114 4563 aaKnown RBP-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 A0A0C4DFX4 3053 aa-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 SACSQ9NZJ4 4579 aa-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 PPLO60437 1756 aa-0.52□□□□□ -2.49
VPS13A-209ENST00000467124 VPS13BQ7Z7G8 4022 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 UMAD1C9J7I0 102 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 SPRR2FQ96RM1 72 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 PRO3102Q9H379 93 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 PRRC2CQ9Y520 2896 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 MAP3K4Q9Y6R4 1608 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 ADAMTS12P58397 1594 aa-0.53□□□□□ -2.49
VPS13A-209ENST00000467124 URB2Q14146 1524 aaKnown RBP-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 LYSTQ99698 3801 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 SPTBN4Q9H254 2564 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 IFI27P40305 119 aaPredicted RBP-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 LINC00158P58513 81 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 ADIRFQ15847 76 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 ST20Q9HBF5 79 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 NIPBLQ6KC79 2804 aaeCLIP-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 HTTP42858 3142 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 DNAH9Q9NYC9 4486 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 CMYA5Q8N3K9 4069 aa-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 USP9YO00507 2555 aaPredicted RBP-0.54□□□□□ -2.5
VPS13A-209ENST00000467124 AKAP9Q99996 3911 aa-0.55□□□□□ -2.5
VPS13A-209ENST00000467124 PTPN23Q9H3S7 1636 aa-0.55□□□□□ -2.5
VPS13A-209ENST00000467124 DNAH1Q9P2D7 4330 aa-0.55□□□□□ -2.5
VPS13A-209ENST00000467124 DOPEY1Q5JWR5 2465 aa-0.56□□□□□ -2.5
VPS13A-209ENST00000467124 NWD1Q149M9 1564 aa-0.56□□□□□ -2.5
VPS13A-209ENST00000467124 A0A087WXM4 84 aa-0.56□□□□□ -2.5
VPS13A-209ENST00000467124 DNAH11Q96DT5 4516 aa-0.56□□□□□ -2.5
VPS13A-209ENST00000467124 TACC2O95359 2948 aa-0.56□□□□□ -2.5
VPS13A-209ENST00000467124 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 TRIOO75962 3097 aa-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 H3BUT2 72 aa-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 S100A13Q99584 98 aa-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 EPG5Q9HCE0 2579 aa-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 SCN11AQ9UI33 1791 aa-0.57□□□□□ -2.5
VPS13A-209ENST00000467124 TIAM2Q8IVF5 1701 aa-0.58□□□□□ -2.5
VPS13A-209ENST00000467124 ITPR3Q14573 2671 aa-0.58□□□□□ -2.5
VPS13A-209ENST00000467124 PIK3C2BO00750 1634 aa-0.58□□□□□ -2.5
VPS13A-209ENST00000467124 SRCAPQ6ZRS2 3230 aa-0.58□□□□□ -2.5
VPS13A-209ENST00000467124 MT1AP04731 61 aa-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 C3orf79P0CE67 100 aa-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 NREPQ16612 68 aa-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 KALRNO60229 2985 aa-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 DNAH7Q8WXX0 4024 aa-0.59□□□□□ -2.5
VPS13A-209ENST00000467124 FASNP49327 2511 aaKnown RBP-0.6□□□□□ -2.5
VPS13A-209ENST00000467124 NESP48681 1621 aa-0.6□□□□□ -2.5
VPS13A-209ENST00000467124 DNAH8Q96JB1 4490 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 DMXL1Q9Y485 3027 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 NDUFA4O00483 81 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 SMIM13P0DJ93 91 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 RELNP78509 3460 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 MYO18BQ8IUG5 2567 aa-0.6□□□□□ -2.51
VPS13A-209ENST00000467124 EYSQ5T1H1 3165 aa-0.61□□□□□ -2.51
VPS13A-209ENST00000467124 DNAH17Q9UFH2 4485 aa-0.61□□□□□ -2.51
VPS13A-209ENST00000467124 MT1HP80294 61 aa-0.61□□□□□ -2.51
VPS13A-209ENST00000467124 ARFGEF2Q9Y6D5 1785 aa-0.61□□□□□ -2.51
VPS13A-209ENST00000467124 DNAH5Q8TE73 4624 aa-0.61□□□□□ -2.51
VPS13A-209ENST00000467124 DNAH10Q8IVF4 4471 aa-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 MT1GP13640 62 aa-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 SPG11Q96JI7 2443 aa-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 DIP2BQ9P265 1576 aa-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 ANKRD11Q6UB99 2663 aaPredicted RBP-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 SMG1Q96Q15 3661 aaKnown RBP-0.62□□□□□ -2.51
VPS13A-209ENST00000467124 DSPP15924 2871 aaKnown RBP-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 WDR87Q6ZQQ6 2873 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 H0YAA0 97 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 H3BNG1 76 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 ZZEF1O43149 2961 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 MT1XP80297 61 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 KRTAP19-5Q3LI72 72 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 ATP5EP2Q5VTU8 51 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 CHD7Q9P2D1 2997 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 MED14O60244 1454 aa-0.63□□□□□ -2.51
VPS13A-209ENST00000467124 COL6A5A8TX70 2615 aa-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 RB1CC1Q8TDY2 1594 aa-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 KRTAP20-1Q3LI63 56 aa-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 TEX15Q9BXT5 2789 aa-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 MAGI3Q5TCQ9 1506 aa-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.64□□□□□ -2.51
VPS13A-209ENST00000467124 CCDC18Q5T9S5 1454 aa-0.65□□□□□ -2.51
VPS13A-209ENST00000467124 NBEAQ8NFP9 2946 aa-0.65□□□□□ -2.51
VPS13A-209ENST00000467124 DEFB121Q5J5C9 76 aa-0.65□□□□□ -2.51
VPS13A-209ENST00000467124 BVES-AS1Q5T3Y7 98 aa-0.65□□□□□ -2.51
VPS13A-209ENST00000467124 TEP1Q99973 2627 aaKnown RBP-0.65□□□□□ -2.51
VPS13A-209ENST00000467124 CSMD1Q96PZ7 3565 aa-0.66□□□□□ -2.52
VPS13A-209ENST00000467124 USP9XQ93008 2570 aaPredicted RBP-0.66□□□□□ -2.52
VPS13A-209ENST00000467124 C5orf42Q9H799 3197 aa-0.67□□□□□ -2.52
VPS13A-209ENST00000467124 MT1HL1P0DM35 61 aa-0.67□□□□□ -2.52
VPS13A-209ENST00000467124 KRTAP19-6Q3LI70 58 aa-0.67□□□□□ -2.52
VPS13A-209ENST00000467124 RANBP2P49792 3224 aaKnown RBP-0.67□□□□□ -2.52
VPS13A-209ENST00000467124 SPTBN5Q9NRC6 3674 aaKnown RBP-0.67□□□□□ -2.52
VPS13A-209ENST00000467124 ERVK-7P63135 1459 aa-0.67□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms