RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 CFAP54Q96N23 3096 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 ZZEF1O43149 2961 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 G3V318 75 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 DEFB1P60022 68 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 TPRXLQ17RH7 258 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 CRIPTQ9P021 101 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 BRCA2P51587 3418 aa1.64□□□□□ -2.15
VPS13D-203ENST00000466732 XIRP2A4UGR9 3374 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 CHD9Q3L8U1 2897 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 H0YAA0 97 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 CLPSL2Q6UWE3 100 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 Q6ZRX8 168 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 DEFB105AQ8NG35 78 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 MRPL34Q9BQ48 92 aaKnown RBP1.63□□□□□ -2.15
VPS13D-203ENST00000466732 R4GN34 69 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 ZFHX2Q9C0A1 2572 aaPredicted RBP1.63□□□□□ -2.15
VPS13D-203ENST00000466732 FBN1P35555 2871 aaKnown RBP1.63□□□□□ -2.15
VPS13D-203ENST00000466732 UNC80Q8N2C7 3258 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 VPS13AQ96RL7 3174 aa1.63□□□□□ -2.15
VPS13D-203ENST00000466732 WNK1Q9H4A3 2382 aa1.62□□□□□ -2.15
VPS13D-203ENST00000466732 PKDREJQ9NTG1 2253 aa1.62□□□□□ -2.15
VPS13D-203ENST00000466732 FRYQ5TBA9 3013 aa1.62□□□□□ -2.15
VPS13D-203ENST00000466732 SPTBN5Q9NRC6 3674 aaKnown RBP1.62□□□□□ -2.15
VPS13D-203ENST00000466732 ZDBF2Q9HCK1 2354 aa1.62□□□□□ -2.15
VPS13D-203ENST00000466732 AKAP13Q12802 2813 aa1.62□□□□□ -2.15
VPS13D-203ENST00000466732 CEP250Q9BV73 2442 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 SZT2Q5T011 3432 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 TPRP12270 2363 aaKnown RBP1.61□□□□□ -2.15
VPS13D-203ENST00000466732 Q6ZSA8 131 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 SPACA4Q8TDM5 124 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 PLAC4Q8WY50 150 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 RP1L1Q8IWN7 2480 aaPredicted RBP1.61□□□□□ -2.15
VPS13D-203ENST00000466732 KALRNO60229 2985 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 CHD7Q9P2D1 2997 aa1.61□□□□□ -2.15
VPS13D-203ENST00000466732 PRRC2CQ9Y520 2896 aaKnown RBP1.61□□□□□ -2.15
VPS13D-203ENST00000466732 CHD6Q8TD26 2715 aa1.6□□□□□ -2.15
VPS13D-203ENST00000466732 LAMA2P24043 3122 aaKnown RBP1.6□□□□□ -2.15
VPS13D-203ENST00000466732 H3BUX3 64 aa1.6□□□□□ -2.15
VPS13D-203ENST00000466732 MAP1AP78559 2803 aaPredicted RBP1.6□□□□□ -2.15
VPS13D-203ENST00000466732 FRYLO94915 3013 aa1.6□□□□□ -2.15
VPS13D-203ENST00000466732 DSPP15924 2871 aaKnown RBP1.6□□□□□ -2.15
VPS13D-203ENST00000466732 DEFB109BQ30KR1 87 aa1.59□□□□□ -2.15
VPS13D-203ENST00000466732 H1FX-AS1Q4G0G2 97 aa1.59□□□□□ -2.15
VPS13D-203ENST00000466732 UNQ6190/PRO20217Q6UXQ8 127 aa1.59□□□□□ -2.15
VPS13D-203ENST00000466732 COX6B2Q6YFQ2 88 aa1.59□□□□□ -2.15
VPS13D-203ENST00000466732 DEFB119Q8N690 84 aa1.59□□□□□ -2.15
VPS13D-203ENST00000466732 IGF2RP11717 2491 aa1.59□□□□□ -2.16
VPS13D-203ENST00000466732 ANKHD1Q8IWZ3 2542 aaKnown RBP1.59□□□□□ -2.16
VPS13D-203ENST00000466732 DNAH14Q0VDD8 3507 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 INE1O15225 51 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 HTN1P15515 57 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 SPRR1AP35321 89 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 PTPRZ1P23471 2315 aaPredicted RBP1.58□□□□□ -2.16
VPS13D-203ENST00000466732 C5orf42Q9H799 3197 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 TACC2O95359 2948 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 TRIOO75962 3097 aa1.58□□□□□ -2.16
VPS13D-203ENST00000466732 REV3LO60673 3130 aa1.57□□□□□ -2.16
VPS13D-203ENST00000466732 USP34Q70CQ2 3546 aa1.57□□□□□ -2.16
VPS13D-203ENST00000466732 MKI67P46013 3256 aaKnown RBP1.57□□□□□ -2.16
VPS13D-203ENST00000466732 ACACAQ13085 2346 aa1.57□□□□□ -2.16
VPS13D-203ENST00000466732 FN1P02751 2386 aaKnown RBP1.57□□□□□ -2.16
VPS13D-203ENST00000466732 EP300Q09472 2414 aaPredicted RBP1.57□□□□□ -2.16
VPS13D-203ENST00000466732 CDH23Q9H251 3354 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 ROS1P08922 2347 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 FLG2Q5D862 2391 aaPredicted RBP1.56□□□□□ -2.16
VPS13D-203ENST00000466732 DEFB130BP0DP73 79 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 DEFB130AP0DP74 79 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 LAMA1P25391 3075 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 APC2O95996 2303 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 AKAP6Q13023 2319 aa1.56□□□□□ -2.16
VPS13D-203ENST00000466732 CFAP47Q6ZTR5 3102 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 DMDP11532 3685 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 LAMA3Q16787 3333 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 PCNX1Q96RV3 2341 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 CEP290O15078 2479 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 RPL37P61927 97 aaKnown RBP1.55□□□□□ -2.16
VPS13D-203ENST00000466732 Q6ZRN7 208 aaPredicted RBP1.55□□□□□ -2.16
VPS13D-203ENST00000466732 C10orf95Q9H7T3 257 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 NOP10Q9NPE3 64 aaKnown RBP1.55□□□□□ -2.16
VPS13D-203ENST00000466732 PRO0255Q9UI72 69 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 NCOR1O75376 2440 aa1.55□□□□□ -2.16
VPS13D-203ENST00000466732 PRUNE2Q8WUY3 3088 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 CREBBPQ92793 2442 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 LYNX1P0DP58 116 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 SPRR1BP22528 89 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 EYSQ5T1H1 3165 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 CACNA1HO95180 2353 aa1.54□□□□□ -2.16
VPS13D-203ENST00000466732 C2CD3Q4AC94 2353 aa1.53□□□□□ -2.16
VPS13D-203ENST00000466732 LELP1Q5T871 98 aa1.53□□□□□ -2.16
VPS13D-203ENST00000466732 C10orf99Q6UWK7 81 aa1.53□□□□□ -2.16
VPS13D-203ENST00000466732 NCOR2Q9Y618 2525 aa1.53□□□□□ -2.16
VPS13D-203ENST00000466732 FREM2Q5SZK8 3169 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 CELSR2Q9HCU4 2923 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 ITPR1Q14643 2758 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 K7EIL1 84 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 UBE2DNLQ8IWF7 75 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 CRCT1Q9UGL9 99 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 SPTA1P02549 2419 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 LRBAP50851 2863 aa1.52□□□□□ -2.17
VPS13D-203ENST00000466732 TENM2Q9NT68 2774 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms