RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 APCP25054 2843 aa4.46□□□□□ -1.69
SYNE1-216ENST00000461872 Q8NDZ9 215 aa4.46□□□□□ -1.7
SYNE1-216ENST00000461872 OXTP01178 125 aa4.46□□□□□ -1.7
SYNE1-216ENST00000461872 LCA10Q71F78 164 aa4.46□□□□□ -1.7
SYNE1-216ENST00000461872 SPACA4Q8TDM5 124 aa4.46□□□□□ -1.7
SYNE1-216ENST00000461872 BAHCC1Q9P281 2608 aa4.45□□□□□ -1.7
SYNE1-216ENST00000461872 FAM168BA1KXE4 195 aa4.45□□□□□ -1.7
SYNE1-216ENST00000461872 LINC00313P59037 77 aa4.45□□□□□ -1.7
SYNE1-216ENST00000461872 C1orf134Q5TEV5 83 aa4.45□□□□□ -1.7
SYNE1-216ENST00000461872 SMR3AQ99954 134 aa4.44□□□□□ -1.7
SYNE1-216ENST00000461872 LAMA3Q16787 3333 aa4.44□□□□□ -1.7
SYNE1-216ENST00000461872 FAM229BQ4G0N7 80 aa4.44□□□□□ -1.7
SYNE1-216ENST00000461872 KRTAP10-3P60369 221 aa4.44□□□□□ -1.7
SYNE1-216ENST00000461872 Q6ZR54 194 aa4.44□□□□□ -1.7
SYNE1-216ENST00000461872 CRIPTQ9P021 101 aa4.43□□□□□ -1.7
SYNE1-216ENST00000461872 MXRA5Q9NR99 2828 aa4.43□□□□□ -1.7
SYNE1-216ENST00000461872 MKI67P46013 3256 aaKnown RBP4.43□□□□□ -1.7
SYNE1-216ENST00000461872 FRYLO94915 3013 aa4.42□□□□□ -1.7
SYNE1-216ENST00000461872 MMP24-AS1A0A0U1RRL7 71 aa4.42□□□□□ -1.7
SYNE1-216ENST00000461872 KRTAP29-1A8MX34 341 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-216ENST00000461872 COX6B2Q6YFQ2 88 aa4.42□□□□□ -1.7
SYNE1-216ENST00000461872 PHF5AQ7RTV0 110 aaKnown RBP4.42□□□□□ -1.7
SYNE1-216ENST00000461872 LRBAP50851 2863 aa4.41□□□□□ -1.7
SYNE1-216ENST00000461872 TNRC18O15417 2968 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-216ENST00000461872 LINC00483Q53H64 154 aa4.41□□□□□ -1.7
SYNE1-216ENST00000461872 KRTAP10-11P60412 298 aa4.41□□□□□ -1.7
SYNE1-216ENST00000461872 WDFY4Q6ZS81 3184 aa4.41□□□□□ -1.7
SYNE1-216ENST00000461872 NF1P21359 2839 aa4.41□□□□□ -1.7
SYNE1-216ENST00000461872 LAMA1P25391 3075 aa4.4□□□□□ -1.7
SYNE1-216ENST00000461872 RTL8CO15255 209 aa4.4□□□□□ -1.71
SYNE1-216ENST00000461872 Q5VV11 94 aa4.4□□□□□ -1.71
SYNE1-216ENST00000461872 APLNQ9ULZ1 77 aa4.4□□□□□ -1.71
SYNE1-216ENST00000461872 KRTAP24-1Q3LI83 254 aa4.39□□□□□ -1.71
SYNE1-216ENST00000461872 KALRNO60229 2985 aa4.39□□□□□ -1.71
SYNE1-216ENST00000461872 DMBT1Q9UGM3 2413 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-216ENST00000461872 ZZEF1O43149 2961 aa4.38□□□□□ -1.71
SYNE1-216ENST00000461872 MIR22HGQ0VDD5 57 aa4.38□□□□□ -1.71
SYNE1-216ENST00000461872 K7EIL1 84 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 A0A087WTM6 91 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 ADGRG4Q8IZF6 3080 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 A0A1W2PNN7 141 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 IGLV7-43P04211 117 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 PLAC8Q9NZF1 115 aa4.36□□□□□ -1.71
SYNE1-216ENST00000461872 J3QL48 77 aa4.35□□□□□ -1.71
SYNE1-216ENST00000461872 LUZP6Q538Z0 58 aa4.35□□□□□ -1.71
SYNE1-216ENST00000461872 LINC01554Q52M75 96 aa4.35□□□□□ -1.71
SYNE1-216ENST00000461872 DMAC1Q96GE9 116 aa4.35□□□□□ -1.71
SYNE1-216ENST00000461872 BRCA2P51587 3418 aa4.34□□□□□ -1.71
SYNE1-216ENST00000461872 CHTF8P0CG12 524 aa4.33□□□□□ -1.72
SYNE1-216ENST00000461872 PSORS1C2Q9UIG4 136 aa4.33□□□□□ -1.72
SYNE1-216ENST00000461872 Q96NJ1 140 aa4.32□□□□□ -1.72
SYNE1-216ENST00000461872 TYMSOSQ8TAI1 123 aa4.32□□□□□ -1.72
SYNE1-216ENST00000461872 PRUNE2Q8WUY3 3088 aa4.32□□□□□ -1.72
SYNE1-216ENST00000461872 HIVEP1P15822 2718 aa4.31□□□□□ -1.72
SYNE1-216ENST00000461872 RBM12B-AS1Q9P1G2 102 aa4.31□□□□□ -1.72
SYNE1-216ENST00000461872 ATMQ13315 3056 aa4.3□□□□□ -1.72
SYNE1-216ENST00000461872 WWC2-AS2Q96NR7 200 aa4.3□□□□□ -1.72
SYNE1-216ENST00000461872 HRES1P13985 223 aa4.3□□□□□ -1.72
SYNE1-216ENST00000461872 CASC10Q5T4H9 136 aa4.29□□□□□ -1.72
SYNE1-216ENST00000461872 RPS29P62273 56 aaKnown RBP4.29□□□□□ -1.72
SYNE1-216ENST00000461872 FREM2Q5SZK8 3169 aa4.27□□□□□ -1.73
SYNE1-216ENST00000461872 UNC80Q8N2C7 3258 aa4.27□□□□□ -1.73
SYNE1-216ENST00000461872 A0A0D9SG42 100 aa4.26□□□□□ -1.73
SYNE1-216ENST00000461872 KRTAP13-1Q8IUC0 172 aa4.26□□□□□ -1.73
SYNE1-216ENST00000461872 DMXL2Q8TDJ6 3036 aa4.26□□□□□ -1.73
SYNE1-216ENST00000461872 LINC00304Q8N9R0 145 aa4.25□□□□□ -1.73
SYNE1-216ENST00000461872 CDH23Q9H251 3354 aa4.25□□□□□ -1.73
SYNE1-216ENST00000461872 SPATA8Q6RVD6 105 aa4.25□□□□□ -1.73
SYNE1-216ENST00000461872 BOD1L1Q8NFC6 3051 aa4.25□□□□□ -1.73
SYNE1-216ENST00000461872 PRR26Q8N8Z3 221 aa4.24□□□□□ -1.73
SYNE1-216ENST00000461872 A6NN06 94 aa4.24□□□□□ -1.73
SYNE1-216ENST00000461872 REV3LO60673 3130 aa4.24□□□□□ -1.73
SYNE1-216ENST00000461872 Q5W150 140 aa4.23□□□□□ -1.73
SYNE1-216ENST00000461872 FBN2P35556 2912 aa4.23□□□□□ -1.73
SYNE1-216ENST00000461872 COL12A1Q99715 3063 aa4.23□□□□□ -1.73
SYNE1-216ENST00000461872 CELSR2Q9HCU4 2923 aa4.23□□□□□ -1.73
SYNE1-216ENST00000461872 VCANP13611 3396 aa4.22□□□□□ -1.73
SYNE1-216ENST00000461872 C9orf92A6NGG3 77 aa4.21□□□□□ -1.74
SYNE1-216ENST00000461872 SPTBN5Q9NRC6 3674 aaKnown RBP4.2□□□□□ -1.74
SYNE1-216ENST00000461872 TENM3Q9P273 2699 aa4.2□□□□□ -1.74
SYNE1-216ENST00000461872 A0A0G2JQZ4 141 aa4.2□□□□□ -1.74
SYNE1-216ENST00000461872 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
SYNE1-216ENST00000461872 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-216ENST00000461872 KRTAP1-5Q9BYS1 174 aa4.19□□□□□ -1.74
SYNE1-216ENST00000461872 VWFP04275 2813 aa4.19□□□□□ -1.74
SYNE1-216ENST00000461872 DCHS2Q6V1P9 2916 aa4.18□□□□□ -1.74
SYNE1-216ENST00000461872 KRTAP7-1Q8IUC3 87 aa4.18□□□□□ -1.74
SYNE1-216ENST00000461872 A0A1B0GU33 70 aa4.18□□□□□ -1.74
SYNE1-216ENST00000461872 A0A0A0MQY5 61 aa4.17□□□□□ -1.74
SYNE1-216ENST00000461872 SZT2Q5T011 3432 aa4.17□□□□□ -1.74
SYNE1-216ENST00000461872 XIRP2A4UGR9 3374 aa4.17□□□□□ -1.74
SYNE1-216ENST00000461872 SPINK7P58062 85 aa4.16□□□□□ -1.74
SYNE1-216ENST00000461872 Q6ZRN7 208 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-216ENST00000461872 USP34Q70CQ2 3546 aa4.16□□□□□ -1.74
SYNE1-216ENST00000461872 ASH1LQ9NR48 2969 aaKnown RBP4.15□□□□□ -1.75
SYNE1-216ENST00000461872 M0R2T5 61 aa4.14□□□□□ -1.75
SYNE1-216ENST00000461872 DNAH14Q0VDD8 3507 aa4.14□□□□□ -1.75
SYNE1-216ENST00000461872 Q8N1X5 172 aa4.13□□□□□ -1.75
SYNE1-216ENST00000461872 TENM1Q9UKZ4 2725 aa4.13□□□□□ -1.75
SYNE1-216ENST00000461872 DMXL1Q9Y485 3027 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms