RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 TSTD3H0UI37 97 aa9.05□□□□□ -0.96
COL7A1-203ENST00000459756 BVES-AS1Q5T3Y7 98 aa9.04□□□□□ -0.96
COL7A1-203ENST00000459756 MUC17Q685J3 4493 aa9.04□□□□□ -0.96
COL7A1-203ENST00000459756 IGLV5-48A0A075B6I7 105 aa9.02□□□□□ -0.97
COL7A1-203ENST00000459756 LINC00575Q6W349 94 aa9.02□□□□□ -0.97
COL7A1-203ENST00000459756 LIMD2Q9BT23 127 aa9.02□□□□□ -0.97
COL7A1-203ENST00000459756 hADV29S1A0JD25 119 aa9.01□□□□□ -0.97
COL7A1-203ENST00000459756 PSMB2P49721 201 aa9□□□□□ -0.97
COL7A1-203ENST00000459756 LINC01547P58512 204 aaPredicted RBP9□□□□□ -0.97
COL7A1-203ENST00000459756 CD164Q04900 197 aa8.99□□□□□ -0.97
COL7A1-203ENST00000459756 HRCT1Q6UXD1 115 aa8.99□□□□□ -0.97
COL7A1-203ENST00000459756 SMIM29Q86T20 159 aa8.99□□□□□ -0.97
COL7A1-203ENST00000459756 M0R143 59 aa8.98□□□□□ -0.97
COL7A1-203ENST00000459756 TRIAP1O43715 76 aa8.98□□□□□ -0.97
COL7A1-203ENST00000459756 Q6ZQY7 126 aa8.98□□□□□ -0.97
COL7A1-203ENST00000459756 BATFQ16520 125 aa8.96□□□□□ -0.98
COL7A1-203ENST00000459756 FAM218AQ96MZ4 157 aa8.96□□□□□ -0.98
COL7A1-203ENST00000459756 H0YGX0 51 aa8.95□□□□□ -0.98
COL7A1-203ENST00000459756 ASB16-AS1Q495Z4 193 aa8.95□□□□□ -0.98
COL7A1-203ENST00000459756 CLEC2BQ92478 149 aa8.94□□□□□ -0.98
COL7A1-203ENST00000459756 SEC61BP60468 96 aaKnown RBP8.93□□□□□ -0.98
COL7A1-203ENST00000459756 SNCGO76070 127 aa8.92□□□□□ -0.98
COL7A1-203ENST00000459756 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.92□□□□□ -0.98
COL7A1-203ENST00000459756 COX6CP09669 75 aa8.91□□□□□ -0.98
COL7A1-203ENST00000459756 XP32Q5T750 250 aa8.91□□□□□ -0.98
COL7A1-203ENST00000459756 Q5XG85 94 aa8.91□□□□□ -0.98
COL7A1-203ENST00000459756 FAT4Q6V0I7 4981 aa8.9□□□□□ -0.98
COL7A1-203ENST00000459756 NAA38Q9BRA0 125 aaKnown RBP8.9□□□□□ -0.98
COL7A1-203ENST00000459756 F8WEM9 126 aa8.89□□□□□ -0.99
COL7A1-203ENST00000459756 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
COL7A1-203ENST00000459756 A0A0G2JQZ4 141 aa8.87□□□□□ -0.99
COL7A1-203ENST00000459756 DNAL4O96015 105 aa8.86□□□□□ -0.99
COL7A1-203ENST00000459756 A0A1B0GX51 115 aa8.85□□□□□ -0.99
COL7A1-203ENST00000459756 SNHG12Q9BXW3 62 aa8.85□□□□□ -0.99
COL7A1-203ENST00000459756 LCE2AQ5TA79 106 aaPredicted RBP8.84□□□□□ -0.99
COL7A1-203ENST00000459756 Q6JHZ5 121 aa8.84□□□□□ -0.99
COL7A1-203ENST00000459756 PPDPFLQ8WWR9 84 aa8.84□□□□□ -0.99
COL7A1-203ENST00000459756 IGLV8-61A0A075B6I0 122 aa8.83□□□□□ -1
COL7A1-203ENST00000459756 TCL1BO95988 128 aa8.83□□□□□ -1
COL7A1-203ENST00000459756 FABP2P12104 132 aa8.83□□□□□ -1
COL7A1-203ENST00000459756 OCIAD2Q56VL3 154 aa8.83□□□□□ -1
COL7A1-203ENST00000459756 C1orf195Q5TG92 126 aa8.83□□□□□ -1
COL7A1-203ENST00000459756 C9orf92A6NGG3 77 aa8.81□□□□□ -1
COL7A1-203ENST00000459756 H3BUT2 72 aa8.8□□□□□ -1
COL7A1-203ENST00000459756 KRTAP4-1Q9BYQ7 146 aa8.8□□□□□ -1
COL7A1-203ENST00000459756 ORMDL1Q9P0S3 153 aa8.8□□□□□ -1
COL7A1-203ENST00000459756 A0A1B0GV72 72 aa8.79□□□□□ -1
COL7A1-203ENST00000459756 PCP4L1A6NKN8 68 aa8.79□□□□□ -1
COL7A1-203ENST00000459756 LST1O00453 97 aa8.79□□□□□ -1
COL7A1-203ENST00000459756 GHRHP01286 108 aa8.78□□□□□ -1
COL7A1-203ENST00000459756 NDUFV3P56181 108 aaKnown RBP8.78□□□□□ -1
COL7A1-203ENST00000459756 IGFL1Q6UW32 110 aa8.78□□□□□ -1
COL7A1-203ENST00000459756 TRBV7-7A0A0K0K1E9 115 aa8.76□□□□□ -1.01
COL7A1-203ENST00000459756 TRACP01848 142 aa8.76□□□□□ -1.01
COL7A1-203ENST00000459756 TAX1BP3O14907 124 aa8.74□□□□□ -1.01
COL7A1-203ENST00000459756 ATXN8Q156A1 80 aa8.74□□□□□ -1.01
COL7A1-203ENST00000459756 H3BMG7 143 aa8.73□□□□□ -1.01
COL7A1-203ENST00000459756 PCOTHQ58A44 107 aa8.73□□□□□ -1.01
COL7A1-203ENST00000459756 LYRM7Q5U5X0 104 aa8.73□□□□□ -1.01
COL7A1-203ENST00000459756 C9orf118A6NHY6 69 aa8.72□□□□□ -1.01
COL7A1-203ENST00000459756 TMEM256-PLSCR3K7ERE1 68 aa8.71□□□□□ -1.02
COL7A1-203ENST00000459756 H3BQ85 93 aa8.7□□□□□ -1.02
COL7A1-203ENST00000459756 A0A1W2PPM0 123 aa8.68□□□□□ -1.02
COL7A1-203ENST00000459756 BAALC-AS2P0C853 105 aa8.68□□□□□ -1.02
COL7A1-203ENST00000459756 COL5A1-AS1Q5SY13 56 aa8.67□□□□□ -1.02
COL7A1-203ENST00000459756 TRBV20-1A0A075B6N2 111 aa8.66□□□□□ -1.02
COL7A1-203ENST00000459756 RPL37P61927 97 aaKnown RBP8.66□□□□□ -1.02
COL7A1-203ENST00000459756 UBE2V1Q13404 147 aa8.66□□□□□ -1.02
COL7A1-203ENST00000459756 Q6Q795 121 aa8.66□□□□□ -1.02
COL7A1-203ENST00000459756 ANKRD29Q8N6D5 301 aa8.66□□□□□ -1.02
COL7A1-203ENST00000459756 C9JAW5 83 aa8.65□□□□□ -1.02
COL7A1-203ENST00000459756 SS18L2Q9UHA2 77 aa8.65□□□□□ -1.02
COL7A1-203ENST00000459756 TEN1Q86WV5 123 aa8.64□□□□□ -1.03
COL7A1-203ENST00000459756 MTURNQ8N3F0 131 aa8.62□□□□□ -1.03
COL7A1-203ENST00000459756 VPS25Q9BRG1 176 aa8.61□□□□□ -1.03
COL7A1-203ENST00000459756 SPCS1Q9Y6A9 102 aa8.61□□□□□ -1.03
COL7A1-203ENST00000459756 A0A087WSZ3 146 aa8.6□□□□□ -1.03
COL7A1-203ENST00000459756 A0A1W2PNM2 257 aa8.6□□□□□ -1.03
COL7A1-203ENST00000459756 RBM3P98179 157 aaKnown RBP8.6□□□□□ -1.03
COL7A1-203ENST00000459756 KRTAP9-2Q9BYQ4 174 aa8.6□□□□□ -1.03
COL7A1-203ENST00000459756 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
COL7A1-203ENST00000459756 CCKP06307 115 aa8.58□□□□□ -1.04
COL7A1-203ENST00000459756 KRTAP19-2Q3LHN2 52 aa8.58□□□□□ -1.04
COL7A1-203ENST00000459756 OBSCN-AS1Q96MR7 158 aa8.58□□□□□ -1.04
COL7A1-203ENST00000459756 DSCR8Q96T75 97 aa8.58□□□□□ -1.04
COL7A1-203ENST00000459756 TRBV7-4A0A0J9YYF1 115 aa8.55□□□□□ -1.04
COL7A1-203ENST00000459756 Q75L30 129 aa8.55□□□□□ -1.04
COL7A1-203ENST00000459756 JMJD7-PLA2G4BH0Y9G9 81 aa8.54□□□□□ -1.04
COL7A1-203ENST00000459756 H3BT86 120 aa8.52□□□□□ -1.05
COL7A1-203ENST00000459756 C14orf132Q9NPU4 83 aa8.52□□□□□ -1.05
COL7A1-203ENST00000459756 K7EP34 96 aa8.51□□□□□ -1.05
COL7A1-203ENST00000459756 ATP11AUNQ6ZP68 121 aa8.51□□□□□ -1.05
COL7A1-203ENST00000459756 Q96NJ1 140 aa8.51□□□□□ -1.05
COL7A1-203ENST00000459756 MT1HP80294 61 aa8.48□□□□□ -1.05
COL7A1-203ENST00000459756 Q6ZQT0 140 aa8.47□□□□□ -1.05
COL7A1-203ENST00000459756 SIGMAR1Q99720 223 aa8.46□□□□□ -1.06
COL7A1-203ENST00000459756 LOC110117498A0A087WWA1 95 aa8.45□□□□□ -1.06
COL7A1-203ENST00000459756 DEFB116Q30KQ4 102 aa8.45□□□□□ -1.06
COL7A1-203ENST00000459756 GTF2H5Q6ZYL4 71 aa8.45□□□□□ -1.06
COL7A1-203ENST00000459756 C20orf166-AS1Q96NR2 134 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 237.7 ms