RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TSPAN13O95857 204 aa5.24□□□□□ -1.57
SYNE1-214ENST00000454018 SPRR4Q96PI1 79 aa5.24□□□□□ -1.57
SYNE1-214ENST00000454018 DMBT1Q9UGM3 2413 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-214ENST00000454018 KRTAP29-1A8MX34 341 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-214ENST00000454018 H0YGX0 51 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 ERC2-IT1O76042 136 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 FAM229BQ4G0N7 80 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 LINC01600Q96MT4 127 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 COX6CP09669 75 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 PSMB2P49721 201 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 BATFQ16520 125 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 LINC00575Q6W349 94 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 MYCBP2O75592 4640 aa5.23□□□□□ -1.57
SYNE1-214ENST00000454018 PCLOQ9Y6V0 5065 aa5.22□□□□□ -1.57
SYNE1-214ENST00000454018 SNCGO76070 127 aa5.22□□□□□ -1.57
SYNE1-214ENST00000454018 LINC00483Q53H64 154 aa5.22□□□□□ -1.57
SYNE1-214ENST00000454018 hADV29S1A0JD25 119 aa5.21□□□□□ -1.58
SYNE1-214ENST00000454018 KRTAP9-7A8MTY7 169 aa5.21□□□□□ -1.58
SYNE1-214ENST00000454018 CRYGAP11844 174 aa5.21□□□□□ -1.58
SYNE1-214ENST00000454018 A0A1B0GX51 115 aa5.2□□□□□ -1.58
SYNE1-214ENST00000454018 ST20-AS1Q8NBB2 130 aa5.2□□□□□ -1.58
SYNE1-214ENST00000454018 IGLV5-48A0A075B6I7 105 aa5.19□□□□□ -1.58
SYNE1-214ENST00000454018 A0A087X002 238 aa5.19□□□□□ -1.58
SYNE1-214ENST00000454018 SPRR1BP22528 89 aa5.19□□□□□ -1.58
SYNE1-214ENST00000454018 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-214ENST00000454018 Q6ZQY7 126 aa5.19□□□□□ -1.58
SYNE1-214ENST00000454018 TEX49A0A1B0GTD5 131 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 LINC01547P58512 204 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-214ENST00000454018 LYRM7Q5U5X0 104 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 SNHG12Q9BXW3 62 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 ANAPC11Q9NYG5 84 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 LRP1Q07954 4544 aaKnown RBP5.18□□□□□ -1.58
SYNE1-214ENST00000454018 MT1HL1P0DM35 61 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 OCIAD2Q56VL3 154 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 PPDPFLQ8WWR9 84 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 CLEC2BQ92478 149 aa5.18□□□□□ -1.58
SYNE1-214ENST00000454018 DNAL4O96015 105 aa5.17□□□□□ -1.58
SYNE1-214ENST00000454018 SCGB1C2P0DMR2 95 aa5.17□□□□□ -1.58
SYNE1-214ENST00000454018 KRTAP10-8P60410 259 aa5.17□□□□□ -1.58
SYNE1-214ENST00000454018 FAT3Q8TDW7 4589 aa5.17□□□□□ -1.58
SYNE1-214ENST00000454018 KRTAP13-2Q52LG2 175 aa5.16□□□□□ -1.58
SYNE1-214ENST00000454018 COL5A1-AS1Q5SY13 56 aa5.16□□□□□ -1.58
SYNE1-214ENST00000454018 DEFB105AQ8NG35 78 aa5.16□□□□□ -1.58
SYNE1-214ENST00000454018 TYMSOSQ8TAI1 123 aa5.16□□□□□ -1.58
SYNE1-214ENST00000454018 LAMTOR3Q9UHA4 124 aa5.16□□□□□ -1.58
SYNE1-214ENST00000454018 LST1O00453 97 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 TAX1BP3O14907 124 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 TRACP01848 142 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 LCE4AQ5TA78 99 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 SMIM29Q86T20 159 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 C3orf22Q8N5N4 141 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 Q8NBF4 154 aa5.15□□□□□ -1.58
SYNE1-214ENST00000454018 NAA38Q9BRA0 125 aaKnown RBP5.15□□□□□ -1.58
SYNE1-214ENST00000454018 H3BUT2 72 aa5.14□□□□□ -1.59
SYNE1-214ENST00000454018 MOBPQ13875 183 aa5.14□□□□□ -1.59
SYNE1-214ENST00000454018 C9orf153Q5TBE3 101 aa5.14□□□□□ -1.59
SYNE1-214ENST00000454018 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
SYNE1-214ENST00000454018 Q8N377 158 aa5.14□□□□□ -1.59
SYNE1-214ENST00000454018 F8WEM9 126 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 H3BQ85 93 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 ATXN8Q156A1 80 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 ORMDL1Q9P0S3 153 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 TNXBP22105 4242 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 TRBV20-1A0A075B6N2 111 aa5.13□□□□□ -1.59
SYNE1-214ENST00000454018 A0A1W2PPM0 123 aa5.12□□□□□ -1.59
SYNE1-214ENST00000454018 TCL1BO95988 128 aa5.12□□□□□ -1.59
SYNE1-214ENST00000454018 FABP2P12104 132 aa5.12□□□□□ -1.59
SYNE1-214ENST00000454018 SSBP3-AS1Q7Z2R9 100 aa5.12□□□□□ -1.59
SYNE1-214ENST00000454018 LINC00304Q8N9R0 145 aa5.12□□□□□ -1.59
SYNE1-214ENST00000454018 TMEM256-PLSCR3K7ERE1 68 aa5.1□□□□□ -1.59
SYNE1-214ENST00000454018 IGLV8-61A0A075B6I0 122 aa5.09□□□□□ -1.59
SYNE1-214ENST00000454018 SPAG11AQ6PDA7 123 aa5.09□□□□□ -1.59
SYNE1-214ENST00000454018 NDUFV3P56181 108 aaKnown RBP5.08□□□□□ -1.6
SYNE1-214ENST00000454018 Q6JHZ5 121 aa5.08□□□□□ -1.6
SYNE1-214ENST00000454018 SPINK1P00995 79 aa5.07□□□□□ -1.6
SYNE1-214ENST00000454018 IGKV2-30P06310 120 aa5.07□□□□□ -1.6
SYNE1-214ENST00000454018 RPS29P62273 56 aaKnown RBP5.07□□□□□ -1.6
SYNE1-214ENST00000454018 SPCS1Q9Y6A9 102 aa5.07□□□□□ -1.6
SYNE1-214ENST00000454018 CD164Q04900 197 aa5.06□□□□□ -1.6
SYNE1-214ENST00000454018 C9JAW5 83 aa5.05□□□□□ -1.6
SYNE1-214ENST00000454018 H3BMG7 143 aa5.05□□□□□ -1.6
SYNE1-214ENST00000454018 BAALC-AS2P0C853 105 aa5.05□□□□□ -1.6
SYNE1-214ENST00000454018 H3BT86 120 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 K7EP34 96 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 IGFL1Q6UW32 110 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 ANKRD29Q8N6D5 301 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 KRTAP4-11Q9BYQ6 195 aa5.04□□□□□ -1.6
SYNE1-214ENST00000454018 LIMD2Q9BT23 127 aa5.03□□□□□ -1.6
SYNE1-214ENST00000454018 GTF2H5Q6ZYL4 71 aa5.02□□□□□ -1.61
SYNE1-214ENST00000454018 A0A0G2JQZ4 141 aa5.02□□□□□ -1.61
SYNE1-214ENST00000454018 JMJD7-PLA2G4BH0Y9G9 81 aa5.02□□□□□ -1.61
SYNE1-214ENST00000454018 MTURNQ8N3F0 131 aa5.02□□□□□ -1.61
SYNE1-214ENST00000454018 A0A1B0GV72 72 aa5.01□□□□□ -1.61
SYNE1-214ENST00000454018 RBM3P98179 157 aaKnown RBP5.01□□□□□ -1.61
SYNE1-214ENST00000454018 Q6Q795 121 aa5.01□□□□□ -1.61
SYNE1-214ENST00000454018 HRCT1Q6UXD1 115 aa5.01□□□□□ -1.61
SYNE1-214ENST00000454018 TRBV7-4A0A0J9YYF1 115 aa5□□□□□ -1.61
SYNE1-214ENST00000454018 TRBV7-7A0A0K0K1E9 115 aa5□□□□□ -1.61
SYNE1-214ENST00000454018 Q5XG85 94 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms