RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 Q6ZRP5 223 aa4.23□□□□□ -1.73
HDAC9-216ENST00000446646 H3BMG7 143 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 SYS1-DBNDD2H3BUS1 97 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 LST1O00453 97 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 NUPR1O60356 82 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 KRTDAPP60985 99 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 UBE2BP63146 152 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 C9orf116Q5BN46 136 aaPredicted RBP4.22□□□□□ -1.73
HDAC9-216ENST00000446646 LCA10Q71F78 164 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 Q8N9P0 234 aaPredicted RBP4.22□□□□□ -1.73
HDAC9-216ENST00000446646 NKAPP1Q8N9T2 125 aa4.22□□□□□ -1.73
HDAC9-216ENST00000446646 TRBV20-1A0A075B6N2 111 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 IGHV6-1A0A0B4J1U7 121 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 LEPROTO15243 131 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 ZNF73O43830 326 aaPredicted RBP4.21□□□□□ -1.74
HDAC9-216ENST00000446646 HINT1P49773 126 aaPredicted RBP4.21□□□□□ -1.74
HDAC9-216ENST00000446646 LINC00158P58513 81 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 LINC00337Q8N6G1 96 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 FAM218AQ96MZ4 157 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 KRTAP4-1Q9BYQ7 146 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 NDUFA12Q9UI09 145 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 PSORS1C2Q9UIG4 136 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 SERP1Q9Y6X1 66 aa4.21□□□□□ -1.74
HDAC9-216ENST00000446646 A8MUN3 132 aa4.2□□□□□ -1.74
HDAC9-216ENST00000446646 ZNF625Q96I27 306 aaPredicted RBP4.2□□□□□ -1.74
HDAC9-216ENST00000446646 XAGE1AQ9HD64 81 aa4.2□□□□□ -1.74
HDAC9-216ENST00000446646 TP73-AS1Q9UF72 201 aa4.2□□□□□ -1.74
HDAC9-216ENST00000446646 IGKV2-30P06310 120 aa4.19□□□□□ -1.74
HDAC9-216ENST00000446646 C3orf79P0CE67 100 aa4.19□□□□□ -1.74
HDAC9-216ENST00000446646 PMCHL2Q9BQD1 86 aa4.19□□□□□ -1.74
HDAC9-216ENST00000446646 A0A1W2PNN7 141 aa4.18□□□□□ -1.74
HDAC9-216ENST00000446646 H3BT86 120 aa4.18□□□□□ -1.74
HDAC9-216ENST00000446646 NPC2P61916 151 aa4.18□□□□□ -1.74
HDAC9-216ENST00000446646 C9orf129Q5T035 196 aaKnown RBP4.18□□□□□ -1.74
HDAC9-216ENST00000446646 TEN1Q86WV5 123 aa4.18□□□□□ -1.74
HDAC9-216ENST00000446646 SPCS1Q9Y6A9 102 aa4.18□□□□□ -1.74
HDAC9-216ENST00000446646 FLGP20930 4061 aaPredicted RBP4.17□□□□□ -1.74
HDAC9-216ENST00000446646 FAM168BA1KXE4 195 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 M0R378 163 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 KRTAP1-4P0C5Y4 121 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 SPATA45Q537H7 98 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 C1orf137Q5JT78 98 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 PHF5AQ7RTV0 110 aaKnown RBP4.17□□□□□ -1.74
HDAC9-216ENST00000446646 SND1-IT1Q9HBX3 110 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 C22orf24Q9Y442 160 aa4.17□□□□□ -1.74
HDAC9-216ENST00000446646 IGLV5-37A0A075B6J1 123 aa4.16□□□□□ -1.74
HDAC9-216ENST00000446646 TMEM256-PLSCR3K7ERE1 68 aa4.16□□□□□ -1.74
HDAC9-216ENST00000446646 SMIM13P0DJ93 91 aa4.16□□□□□ -1.74
HDAC9-216ENST00000446646 LINC01547P58512 204 aaPredicted RBP4.16□□□□□ -1.74
HDAC9-216ENST00000446646 LINC00313P59037 77 aa4.16□□□□□ -1.74
HDAC9-216ENST00000446646 MIR7-3HGQ8N6C7 128 aa4.16□□□□□ -1.74
HDAC9-216ENST00000446646 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
HDAC9-216ENST00000446646 IGKV2D-26A0A0A0MRZ7 120 aa4.15□□□□□ -1.75
HDAC9-216ENST00000446646 ZNF815PA8K554 130 aa4.15□□□□□ -1.75
HDAC9-216ENST00000446646 COX7CP15954 63 aa4.15□□□□□ -1.75
HDAC9-216ENST00000446646 BVES-AS1Q5T3Y7 98 aa4.15□□□□□ -1.75
HDAC9-216ENST00000446646 A0A1W2PPM0 123 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 TSPEAR-AS2P59090 65 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 CXCL6P80162 114 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 LCE1AQ5T7P2 110 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 KRTAP11-1Q8IUC1 163 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 PPDPFLQ8WWR9 84 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 DIRC1Q969H9 104 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 RETNLBQ9BQ08 111 aa4.14□□□□□ -1.75
HDAC9-216ENST00000446646 ZNF706Q9Y5V0 76 aaPredicted RBP4.14□□□□□ -1.75
HDAC9-216ENST00000446646 A0A0J9YXY3 114 aa4.13□□□□□ -1.75
HDAC9-216ENST00000446646 TIMM17BO60830 172 aa4.13□□□□□ -1.75
HDAC9-216ENST00000446646 IGLV7-43P04211 117 aa4.13□□□□□ -1.75
HDAC9-216ENST00000446646 RPL28P46779 137 aaKnown RBP4.13□□□□□ -1.75
HDAC9-216ENST00000446646 UBE2AP49459 152 aa4.13□□□□□ -1.75
HDAC9-216ENST00000446646 ATP5EP56381 51 aaPredicted RBP4.13□□□□□ -1.75
HDAC9-216ENST00000446646 IGKV2-28A0A075B6P5 120 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 RPL37AP8A6NKH3 93 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 BCE1O60756 84 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 IGKV2D-28P01615 120 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 S100A7L2Q5SY68 101 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 LINC00167Q96N53 147 aa4.12□□□□□ -1.75
HDAC9-216ENST00000446646 TRBV7-7A0A0K0K1E9 115 aa4.11□□□□□ -1.75
HDAC9-216ENST00000446646 TRBV10-2A0A0K0K1G8 114 aa4.11□□□□□ -1.75
HDAC9-216ENST00000446646 A0A1B0GW54 56 aa4.11□□□□□ -1.75
HDAC9-216ENST00000446646 NCR3O14931 201 aa4.11□□□□□ -1.75
HDAC9-216ENST00000446646 DAND5Q8N907 189 aa4.11□□□□□ -1.75
HDAC9-216ENST00000446646 IGLV1-50A0A075B6I6 118 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 LOC107984156A0A0G2JMH3 177 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 ATOX1O00244 68 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 ZNF861PO60384 105 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 MT1HP80294 61 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 KRTAP19-2Q3LHN2 52 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 C7orf65Q6ZTY9 151 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 KRTAP7-1Q8IUC3 87 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 ARL17AQ8IVW1 177 aa4.1□□□□□ -1.75
HDAC9-216ENST00000446646 ETDCA0A1B0GVM5 59 aa4.09□□□□□ -1.75
HDAC9-216ENST00000446646 PCP2Q8IVA1 136 aa4.09□□□□□ -1.75
HDAC9-216ENST00000446646 DSCR8Q96T75 97 aa4.09□□□□□ -1.75
HDAC9-216ENST00000446646 K7ERJ3 54 aa4.08□□□□□ -1.76
HDAC9-216ENST00000446646 KRTAP10-6P60371 365 aaPredicted RBP4.08□□□□□ -1.76
HDAC9-216ENST00000446646 LINC00308Q8TCZ7 52 aa4.08□□□□□ -1.76
HDAC9-216ENST00000446646 TRAV23DV6A0A075B6W5 121 aa4.07□□□□□ -1.76
HDAC9-216ENST00000446646 TRBV10-3A0A0K0K1G6 114 aa4.07□□□□□ -1.76
HDAC9-216ENST00000446646 H3BUT2 72 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms