RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 DUOX1Q9NRD9 1551 aa1.34□□□□□ -2.2
VPS50-206ENST00000443443 WNK2Q9Y3S1 2297 aa1.32□□□□□ -2.2
VPS50-206ENST00000443443 SPTBN2O15020 2390 aa1.32□□□□□ -2.2
VPS50-206ENST00000443443 MROH2BQ7Z745 1585 aa1.3□□□□□ -2.2
VPS50-206ENST00000443443 PRLHP81277 87 aa1.3□□□□□ -2.2
VPS50-206ENST00000443443 S4R3F8 94 aa1.3□□□□□ -2.2
VPS50-206ENST00000443443 CLTCL1P53675 1640 aa1.29□□□□□ -2.2
VPS50-206ENST00000443443 DEFB106AQ8N104 65 aa1.29□□□□□ -2.2
VPS50-206ENST00000443443 CACNA1HO95180 2353 aa1.29□□□□□ -2.2
VPS50-206ENST00000443443 ZNF462Q96JM2 2506 aa1.29□□□□□ -2.2
VPS50-206ENST00000443443 DEFB131AP59861 70 aa1.28□□□□□ -2.2
VPS50-206ENST00000443443 TTC28Q96AY4 2481 aa1.28□□□□□ -2.2
VPS50-206ENST00000443443 IGLV5-48A0A075B6I7 105 aa1.27□□□□□ -2.21
VPS50-206ENST00000443443 SPINK6Q6UWN8 80 aa1.27□□□□□ -2.21
VPS50-206ENST00000443443 GCC2Q8IWJ2 1684 aa1.26□□□□□ -2.21
VPS50-206ENST00000443443 ALMS1Q8TCU4 4167 aa1.26□□□□□ -2.21
VPS50-206ENST00000443443 MEGF8Q7Z7M0 2845 aa1.26□□□□□ -2.21
VPS50-206ENST00000443443 SPTBN1Q01082 2364 aaKnown RBP1.25□□□□□ -2.21
VPS50-206ENST00000443443 NOP10Q9NPE3 64 aaKnown RBP1.24□□□□□ -2.21
VPS50-206ENST00000443443 PKDREJQ9NTG1 2253 aa1.24□□□□□ -2.21
VPS50-206ENST00000443443 MMP24-AS1A0A0U1RRL7 71 aa1.22□□□□□ -2.21
VPS50-206ENST00000443443 H0YGG7 62 aa1.22□□□□□ -2.21
VPS50-206ENST00000443443 SPINK1P00995 79 aa1.21□□□□□ -2.22
VPS50-206ENST00000443443 DEFB135Q30KP9 77 aa1.19□□□□□ -2.22
VPS50-206ENST00000443443 ZNF292O60281 2723 aa1.18□□□□□ -2.22
VPS50-206ENST00000443443 POLQO75417 2590 aa1.18□□□□□ -2.22
VPS50-206ENST00000443443 REV3LO60673 3130 aa1.16□□□□□ -2.22
VPS50-206ENST00000443443 KNL1Q8NG31 2342 aa1.16□□□□□ -2.22
VPS50-206ENST00000443443 POLR2KP53803 58 aaKnown RBP1.16□□□□□ -2.22
VPS50-206ENST00000443443 SMR3AQ99954 134 aa1.16□□□□□ -2.22
VPS50-206ENST00000443443 GPR98Q8WXG9 6306 aa1.16□□□□□ -2.22
VPS50-206ENST00000443443 M0R2T5 61 aa1.15□□□□□ -2.23
VPS50-206ENST00000443443 PCNX1Q96RV3 2341 aa1.14□□□□□ -2.23
VPS50-206ENST00000443443 RPL39P62891 51 aaKnown RBP1.14□□□□□ -2.23
VPS50-206ENST00000443443 ABCA12Q86UK0 2595 aa1.14□□□□□ -2.23
VPS50-206ENST00000443443 ABCA2Q9BZC7 2435 aa1.14□□□□□ -2.23
VPS50-206ENST00000443443 F8P00451 2351 aa1.13□□□□□ -2.23
VPS50-206ENST00000443443 TPRP12270 2363 aaKnown RBP1.13□□□□□ -2.23
VPS50-206ENST00000443443 CHD9Q3L8U1 2897 aa1.13□□□□□ -2.23
VPS50-206ENST00000443443 GVINP1Q7Z2Y8 2422 aa1.13□□□□□ -2.23
VPS50-206ENST00000443443 PDE4DIPQ5VU43 2346 aa1.13□□□□□ -2.23
VPS50-206ENST00000443443 CELSR2Q9HCU4 2923 aa1.12□□□□□ -2.23
VPS50-206ENST00000443443 M0QY20 66 aa1.12□□□□□ -2.23
VPS50-206ENST00000443443 U3KQA8 63 aa1.12□□□□□ -2.23
VPS50-206ENST00000443443 DSPP15924 2871 aaKnown RBP1.09□□□□□ -2.23
VPS50-206ENST00000443443 A8MTW9 85 aa1.09□□□□□ -2.23
VPS50-206ENST00000443443 KRTAP5-10Q6L8G5 202 aa1.09□□□□□ -2.23
VPS50-206ENST00000443443 RPL39LQ96EH5 51 aaKnown RBP1.09□□□□□ -2.23
VPS50-206ENST00000443443 IGF2RP11717 2491 aa1.09□□□□□ -2.24
VPS50-206ENST00000443443 AKAP6Q13023 2319 aa1.09□□□□□ -2.24
VPS50-206ENST00000443443 TRANK1O15050 2925 aa1.09□□□□□ -2.24
VPS50-206ENST00000443443 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
VPS50-206ENST00000443443 KRTAP19-3Q7Z4W3 81 aa1.08□□□□□ -2.24
VPS50-206ENST00000443443 ARHGAP5-AS1Q96IT6 56 aa1.08□□□□□ -2.24
VPS50-206ENST00000443443 TENM4Q6N022 2769 aa1.08□□□□□ -2.24
VPS50-206ENST00000443443 KRTAP2-3P0C7H8 128 aa1.07□□□□□ -2.24
VPS50-206ENST00000443443 KRTAP2-4Q9BYR9 128 aa1.07□□□□□ -2.24
VPS50-206ENST00000443443 KRTAP2-1Q9BYU5 128 aa1.07□□□□□ -2.24
VPS50-206ENST00000443443 CLPSL2Q6UWE3 100 aa1.06□□□□□ -2.24
VPS50-206ENST00000443443 CSPG4Q6UVK1 2322 aa1.05□□□□□ -2.24
VPS50-206ENST00000443443 CSMD3Q7Z407 3707 aa1.05□□□□□ -2.24
VPS50-206ENST00000443443 BDP1A6H8Y1 2624 aa1.04□□□□□ -2.24
VPS50-206ENST00000443443 PIEZO1Q92508 2521 aa1.03□□□□□ -2.25
VPS50-206ENST00000443443 LEAP2Q969E1 77 aa1.02□□□□□ -2.25
VPS50-206ENST00000443443 TOMM7Q9P0U1 55 aa1.02□□□□□ -2.25
VPS50-206ENST00000443443 M0QZ58 72 aa1.01□□□□□ -2.25
VPS50-206ENST00000443443 C9orf92A6NGG3 77 aa1□□□□□ -2.25
VPS50-206ENST00000443443 VWFP04275 2813 aa1□□□□□ -2.25
VPS50-206ENST00000443443 TENM3Q9P273 2699 aa0.98□□□□□ -2.25
VPS50-206ENST00000443443 PRM1P04553 51 aa0.98□□□□□ -2.25
VPS50-206ENST00000443443 ATRQ13535 2644 aa0.97□□□□□ -2.25
VPS50-206ENST00000443443 MUC5BQ9HC84 5762 aaPredicted RBP0.96□□□□□ -2.25
VPS50-206ENST00000443443 ANK2Q01484 3957 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 AHNAK2Q8IVF2 5795 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 H3BNG1 76 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 FBN2P35556 2912 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 SPTA1P02549 2419 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 AKAP13Q12802 2813 aa0.96□□□□□ -2.26
VPS50-206ENST00000443443 TTTY10Q9BZA0 68 aa0.95□□□□□ -2.26
VPS50-206ENST00000443443 CHD6Q8TD26 2715 aa0.95□□□□□ -2.26
VPS50-206ENST00000443443 PRRC2CQ9Y520 2896 aaKnown RBP0.94□□□□□ -2.26
VPS50-206ENST00000443443 EP300Q09472 2414 aaPredicted RBP0.94□□□□□ -2.26
VPS50-206ENST00000443443 FRAS1Q86XX4 4008 aa0.94□□□□□ -2.26
VPS50-206ENST00000443443 TNP1P09430 55 aa0.94□□□□□ -2.26
VPS50-206ENST00000443443 HECTD1Q9ULT8 2610 aa0.94□□□□□ -2.26
VPS50-206ENST00000443443 PKD1L2Q7Z442 2459 aa0.93□□□□□ -2.26
VPS50-206ENST00000443443 CELSR1Q9NYQ6 3014 aa0.92□□□□□ -2.26
VPS50-206ENST00000443443 CEP290O15078 2479 aa0.92□□□□□ -2.26
VPS50-206ENST00000443443 NOTCH1P46531 2555 aa0.92□□□□□ -2.26
VPS50-206ENST00000443443 APCP25054 2843 aa0.91□□□□□ -2.26
VPS50-206ENST00000443443 PRCDQ00LT1 54 aa0.9□□□□□ -2.27
VPS50-206ENST00000443443 NCOR1O75376 2440 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 OTOGQ6ZRI0 2925 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 LINC01590Q5TEZ4 76 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 A0A0C4DFX4 3053 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 TNXBP22105 4242 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 ZNF469Q96JG9 3925 aaPredicted RBP0.89□□□□□ -2.27
VPS50-206ENST00000443443 CHD8Q9HCK8 2581 aa0.89□□□□□ -2.27
VPS50-206ENST00000443443 CREBBPQ92793 2442 aa0.87□□□□□ -2.27
VPS50-206ENST00000443443 BSNQ9UPA5 3926 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms