RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.8□□□□□ -0.2
RAPGEF1-206ENST00000438647 TMEM238LA0A1B0GVL6 79 aa13.79□□□□□ -0.2
RAPGEF1-206ENST00000438647 A6NJY4 79 aa13.79□□□□□ -0.2
RAPGEF1-206ENST00000438647 PYY3Q5JQD4 70 aa13.79□□□□□ -0.2
RAPGEF1-206ENST00000438647 CEND1Q8N111 149 aa13.79□□□□□ -0.2
RAPGEF1-206ENST00000438647 TMA7Q9Y2S6 64 aaKnown RBP13.78□□□□□ -0.2
RAPGEF1-206ENST00000438647 SNCGO76070 127 aa13.76□□□□□ -0.21
RAPGEF1-206ENST00000438647 Q5XG85 94 aa13.75□□□□□ -0.21
RAPGEF1-206ENST00000438647 PPDPFLQ8WWR9 84 aa13.75□□□□□ -0.21
RAPGEF1-206ENST00000438647 H0YGX0 51 aa13.73□□□□□ -0.21
RAPGEF1-206ENST00000438647 A0A0G2JQZ4 141 aa13.71□□□□□ -0.21
RAPGEF1-206ENST00000438647 Q6JHZ5 121 aa13.71□□□□□ -0.21
RAPGEF1-206ENST00000438647 PRO1854Q9UHT4 67 aa13.71□□□□□ -0.21
RAPGEF1-206ENST00000438647 IGLV8-61A0A075B6I0 122 aa13.68□□□□□ -0.22
RAPGEF1-206ENST00000438647 FXYD2P54710 66 aa13.68□□□□□ -0.22
RAPGEF1-206ENST00000438647 ASB16-AS1Q495Z4 193 aa13.68□□□□□ -0.22
RAPGEF1-206ENST00000438647 OCIAD2Q56VL3 154 aa13.68□□□□□ -0.22
RAPGEF1-206ENST00000438647 SEC61BP60468 96 aaKnown RBP13.67□□□□□ -0.22
RAPGEF1-206ENST00000438647 HSD52Q0P140 79 aa13.67□□□□□ -0.22
RAPGEF1-206ENST00000438647 SNHG12Q9BXW3 62 aa13.67□□□□□ -0.22
RAPGEF1-206ENST00000438647 TCL1BO95988 128 aa13.66□□□□□ -0.22
RAPGEF1-206ENST00000438647 CLEC2BQ92478 149 aa13.66□□□□□ -0.22
RAPGEF1-206ENST00000438647 XP32Q5T750 250 aa13.64□□□□□ -0.23
RAPGEF1-206ENST00000438647 A0A1B0GX51 115 aa13.62□□□□□ -0.23
RAPGEF1-206ENST00000438647 C1orf195Q5TG92 126 aa13.62□□□□□ -0.23
RAPGEF1-206ENST00000438647 IGFL1Q6UW32 110 aa13.62□□□□□ -0.23
RAPGEF1-206ENST00000438647 UQCR10Q9UDW1 63 aa13.62□□□□□ -0.23
RAPGEF1-206ENST00000438647 GHRHP01286 108 aa13.61□□□□□ -0.23
RAPGEF1-206ENST00000438647 FAM218AQ96MZ4 157 aa13.61□□□□□ -0.23
RAPGEF1-206ENST00000438647 TRBV7-7A0A0K0K1E9 115 aa13.56□□□□□ -0.24
RAPGEF1-206ENST00000438647 C9orf92A6NGG3 77 aa13.56□□□□□ -0.24
RAPGEF1-206ENST00000438647 TRIAP1O43715 76 aa13.56□□□□□ -0.24
RAPGEF1-206ENST00000438647 H3BUT2 72 aa13.54□□□□□ -0.24
RAPGEF1-206ENST00000438647 FAT4Q6V0I7 4981 aa13.53□□□□□ -0.24
RAPGEF1-206ENST00000438647 NDUFV3P56181 108 aaKnown RBP13.52□□□□□ -0.25
RAPGEF1-206ENST00000438647 K7ERJ3 54 aa13.51□□□□□ -0.25
RAPGEF1-206ENST00000438647 PSMB2P49721 201 aa13.51□□□□□ -0.25
RAPGEF1-206ENST00000438647 COX6CP09669 75 aa13.5□□□□□ -0.25
RAPGEF1-206ENST00000438647 DNAL4O96015 105 aa13.48□□□□□ -0.25
RAPGEF1-206ENST00000438647 FABP2P12104 132 aa13.47□□□□□ -0.25
RAPGEF1-206ENST00000438647 Q6Q795 121 aa13.45□□□□□ -0.26
RAPGEF1-206ENST00000438647 H3BMG7 143 aa13.44□□□□□ -0.26
RAPGEF1-206ENST00000438647 H3BQ85 93 aa13.44□□□□□ -0.26
RAPGEF1-206ENST00000438647 TEN1Q86WV5 123 aa13.43□□□□□ -0.26
RAPGEF1-206ENST00000438647 SS18L2Q9UHA2 77 aa13.43□□□□□ -0.26
RAPGEF1-206ENST00000438647 ORMDL1Q9P0S3 153 aa13.42□□□□□ -0.26
RAPGEF1-206ENST00000438647 KRTAP4-1Q9BYQ7 146 aa13.41□□□□□ -0.26
RAPGEF1-206ENST00000438647 LST1O00453 97 aa13.4□□□□□ -0.26
RAPGEF1-206ENST00000438647 PCOTHQ58A44 107 aa13.37□□□□□ -0.27
RAPGEF1-206ENST00000438647 TMEM256-PLSCR3K7ERE1 68 aa13.36□□□□□ -0.27
RAPGEF1-206ENST00000438647 LCE2AQ5TA79 106 aaPredicted RBP13.36□□□□□ -0.27
RAPGEF1-206ENST00000438647 SCGB1C2P0DMR2 95 aa13.34□□□□□ -0.27
RAPGEF1-206ENST00000438647 SMIM6P0DI80 62 aa13.33□□□□□ -0.28
RAPGEF1-206ENST00000438647 A0A087WSZ3 146 aa13.32□□□□□ -0.28
RAPGEF1-206ENST00000438647 RPL37P61927 97 aaKnown RBP13.32□□□□□ -0.28
RAPGEF1-206ENST00000438647 M0R143 59 aa13.3□□□□□ -0.28
RAPGEF1-206ENST00000438647 TRACP01848 142 aa13.3□□□□□ -0.28
RAPGEF1-206ENST00000438647 ANKRD29Q8N6D5 301 aa13.29□□□□□ -0.28
RAPGEF1-206ENST00000438647 A0A1W2PNM2 257 aa13.26□□□□□ -0.29
RAPGEF1-206ENST00000438647 UBE2V1Q13404 147 aa13.26□□□□□ -0.29
RAPGEF1-206ENST00000438647 TRBV7-4A0A0J9YYF1 115 aa13.24□□□□□ -0.29
RAPGEF1-206ENST00000438647 OBSCN-AS1Q96MR7 158 aa13.24□□□□□ -0.29
RAPGEF1-206ENST00000438647 A0A1B0GV72 72 aa13.23□□□□□ -0.29
RAPGEF1-206ENST00000438647 TSTD3H0UI37 97 aa13.17□□□□□ -0.3
RAPGEF1-206ENST00000438647 Q75L30 129 aa13.17□□□□□ -0.3
RAPGEF1-206ENST00000438647 Q96NJ1 140 aa13.17□□□□□ -0.3
RAPGEF1-206ENST00000438647 CCKP06307 115 aa13.16□□□□□ -0.3
RAPGEF1-206ENST00000438647 RBM3P98179 157 aaKnown RBP13.14□□□□□ -0.31
RAPGEF1-206ENST00000438647 BAALC-AS2P0C853 105 aa13.12□□□□□ -0.31
RAPGEF1-206ENST00000438647 ATXN8Q156A1 80 aa13.12□□□□□ -0.31
RAPGEF1-206ENST00000438647 ATP11AUNQ6ZP68 121 aa13.12□□□□□ -0.31
RAPGEF1-206ENST00000438647 DSCR8Q96T75 97 aa13.12□□□□□ -0.31
RAPGEF1-206ENST00000438647 SIGMAR1Q99720 223 aa13.12□□□□□ -0.31
RAPGEF1-206ENST00000438647 NAA38Q9BRA0 125 aaKnown RBP13.08□□□□□ -0.32
RAPGEF1-206ENST00000438647 IGKV4-1P06312 121 aa13.07□□□□□ -0.32
RAPGEF1-206ENST00000438647 LYRM7Q5U5X0 104 aa13.07□□□□□ -0.32
RAPGEF1-206ENST00000438647 VPS25Q9BRG1 176 aa13.07□□□□□ -0.32
RAPGEF1-206ENST00000438647 KRTAP19-2Q3LHN2 52 aa13.05□□□□□ -0.32
RAPGEF1-206ENST00000438647 LCE2CQ5TA81 110 aa13.04□□□□□ -0.32
RAPGEF1-206ENST00000438647 C20orf166-AS1Q96NR2 134 aa13.04□□□□□ -0.32
RAPGEF1-206ENST00000438647 LOC105371267A0A1B0GV96 52 aa13.03□□□□□ -0.32
RAPGEF1-206ENST00000438647 C9JAW5 83 aa13.03□□□□□ -0.32
RAPGEF1-206ENST00000438647 C21orf62-AS1Q17RA5 79 aa13.03□□□□□ -0.32
RAPGEF1-206ENST00000438647 LINC00472Q9H8W2 130 aa13.02□□□□□ -0.33
RAPGEF1-206ENST00000438647 DSCR10P59022 87 aa13.01□□□□□ -0.33
RAPGEF1-206ENST00000438647 BATFQ16520 125 aa13.01□□□□□ -0.33
RAPGEF1-206ENST00000438647 A8MUU9 505 aa13□□□□□ -0.33
RAPGEF1-206ENST00000438647 JMJD7-PLA2G4BH0Y9G9 81 aa12.99□□□□□ -0.33
RAPGEF1-206ENST00000438647 LINC00313P59037 77 aa12.99□□□□□ -0.33
RAPGEF1-206ENST00000438647 TRBV20-1A0A075B6N2 111 aa12.98□□□□□ -0.33
RAPGEF1-206ENST00000438647 DEFB116Q30KQ4 102 aa12.97□□□□□ -0.33
RAPGEF1-206ENST00000438647 COX6B2Q6YFQ2 88 aa12.93□□□□□ -0.34
RAPGEF1-206ENST00000438647 PDE6GP18545 87 aa12.91□□□□□ -0.34
RAPGEF1-206ENST00000438647 MT1HP80294 61 aa12.91□□□□□ -0.34
RAPGEF1-206ENST00000438647 KRTAP9-2Q9BYQ4 174 aa12.91□□□□□ -0.34
RAPGEF1-206ENST00000438647 LOC110117498A0A087WWA1 95 aa12.89□□□□□ -0.35
RAPGEF1-206ENST00000438647 IGHV6-1A0A0B4J1U7 121 aa12.89□□□□□ -0.35
RAPGEF1-206ENST00000438647 A0A1B0GW54 56 aa12.89□□□□□ -0.35
RAPGEF1-206ENST00000438647 Q6ZQT0 140 aa12.89□□□□□ -0.35
RAPGEF1-206ENST00000438647 J3KT08 172 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms