RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 C3orf79P0CE67 100 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 GCHFRP30047 84 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 SPINK9Q5DT21 86 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 C9orf163Q8N9P6 203 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 TRBV7-3A0A075B6L6 115 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 TRBV25-1A0A075B6N4 114 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 A0A087WSZ3 146 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 MYMXA0A1B0GTQ4 84 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 CHKB-CPT1BH3BT56 60 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 H3BVH4 76 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 ARL14EPLP0DKL9 152 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 PRB3Q04118 309 aaPredicted RBP2.31□□□□□ -2.04
USP54-206ENST00000433394 MIR22HGQ0VDD5 57 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 LYPD5Q6UWN5 251 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 C4orf3Q8WVX3 66 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 FAM103A1Q9BTL3 118 aaKnown RBP2.31□□□□□ -2.04
USP54-206ENST00000433394 CYSTM1Q9H1C7 97 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 SORL1Q92673 2214 aa2.31□□□□□ -2.04
USP54-206ENST00000433394 STAB1Q9NY15 2570 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 IGKV2-40A0A087WW87 121 aaPredicted RBP2.3□□□□□ -2.04
USP54-206ENST00000433394 TRBV6-1A0A0K0K1D8 114 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 CLPSL1A2RUU4 121 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 G3V318 75 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 IGKV2D-40P01614 121 aaPredicted RBP2.3□□□□□ -2.04
USP54-206ENST00000433394 MIFP14174 115 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 UBE2D3P61077 147 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 UBE2D2P62837 147 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 DEFB121Q5J5C9 76 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 SFTA2Q6UW10 78 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 NDUFA11Q86Y39 141 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 C20orf197Q8N268 126 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 LENEPQ9Y5L5 61 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 SNURFQ9Y675 71 aa2.3□□□□□ -2.04
USP54-206ENST00000433394 TENM1Q9UKZ4 2725 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 TRAV12-3A0A0B4J271 114 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 TRAV22A0A0B4J277 110 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 IGKV3D-7A0A0C4DH55 119 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 IGKV3OR2-268A0A0C4DH90 116 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 F8WEM9 126 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 APELAP0DMC3 54 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 IFI27L1Q96BM0 104 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 MRPL36Q9P0J6 103 aaKnown RBP2.29□□□□□ -2.04
USP54-206ENST00000433394 C22orf24Q9Y442 160 aa2.29□□□□□ -2.04
USP54-206ENST00000433394 ANK3Q12955 4377 aaKnown RBP2.28□□□□□ -2.04
USP54-206ENST00000433394 ATP5EP2Q5VTU8 51 aa2.28□□□□□ -2.04
USP54-206ENST00000433394 NBEAL1Q6ZS30 2694 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 VWFP04275 2813 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 TRBV10-1A0A0K0K1A3 114 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 TEX49A0A1B0GTD5 131 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 C2orf70A6NJV1 201 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 LEPROTL1O95214 131 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 IFI27P40305 119 aaPredicted RBP2.27□□□□□ -2.05
USP54-206ENST00000433394 Q6JHZ5 121 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 RHPN1-AS1Q9BWJ2 59 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 ZFHX3Q15911 3703 aa2.27□□□□□ -2.05
USP54-206ENST00000433394 MGAM2Q2M2H8 2515 aa2.26□□□□□ -2.05
USP54-206ENST00000433394 TRAV12-1A0A0B4J245 112 aa2.26□□□□□ -2.05
USP54-206ENST00000433394 ELOF1P60002 83 aaKnown RBP2.26□□□□□ -2.05
USP54-206ENST00000433394 ATXN8Q156A1 80 aa2.26□□□□□ -2.05
USP54-206ENST00000433394 Q8TAT8 98 aa2.26□□□□□ -2.05
USP54-206ENST00000433394 MUC4Q99102 2169 aa2.26□□□□□ -2.05
USP54-206ENST00000433394 NOTCH1P46531 2555 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 PKD1L1Q8TDX9 2849 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 A8MTW9 85 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 HIGD1CA8MV81 97 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 D6R8Y8 96 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 DEFB114Q30KQ6 69 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.25□□□□□ -2.05
USP54-206ENST00000433394 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 Q86TA4 180 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 MUSTN1Q8IVN3 82 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 WFDC9Q8NEX5 89 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 SMR3AQ99954 134 aa2.25□□□□□ -2.05
USP54-206ENST00000433394 IGKV3-7A0A075B6H7 116 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 TRBV6-8A0A0A6YYG3 113 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 TRAV21A0A0B4J279 112 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 SMIM27A0A1W2PRY6 76 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 UBE2D1P51668 147 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 Q5VV11 94 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 UNQ6190/PRO20217Q6UXQ8 127 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 DMAC1Q96GE9 116 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 CNFNQ9BYD5 112 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 MUC19Q7Z5P9 8384 aa2.24□□□□□ -2.05
USP54-206ENST00000433394 M0R3E3 92 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 PPP1R17O96001 155 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 ARMS2P0C7Q2 107 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 C10orf99Q6UWK7 81 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 CDC42SE2Q9NRR3 84 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 ORMDL1Q9P0S3 153 aa2.23□□□□□ -2.05
USP54-206ENST00000433394 A0A1B0GUT8 65 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 LINC01549A6NIU2 74 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 DNAL4O96015 105 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 IGHV3-33P01772 117 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 SPAG11BQ08648 103 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 DEFB136Q30KP8 78 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 SPAG11AQ6PDA7 123 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 V9GYV3 84 aa2.22□□□□□ -2.05
USP54-206ENST00000433394 LOC101927531A0A1B0GV80 90 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 K7EMI3 77 aa2.21□□□□□ -2.06
USP54-206ENST00000433394 ANGP03950 147 aaKnown RBP2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms