RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 LRRK2Q5S007 2527 aa10.08□□□□□ -0.8
C9orf3-206ENST00000428313 LINC00472Q9H8W2 130 aa10.08□□□□□ -0.8
C9orf3-206ENST00000428313 H3BNG1 76 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 ASB16-AS1Q495Z4 193 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 REG3GQ6UW15 175 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 KRTAP7-1Q8IUC3 87 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 TENM4Q6N022 2769 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 KRTAP1-1Q07627 177 aa10.07□□□□□ -0.8
C9orf3-206ENST00000428313 MMP24-AS1A0A0U1RRL7 71 aa10.05□□□□□ -0.8
C9orf3-206ENST00000428313 TP53AIP1Q9HCN2 124 aa10.05□□□□□ -0.8
C9orf3-206ENST00000428313 PCOTHQ58A44 107 aa10.05□□□□□ -0.8
C9orf3-206ENST00000428313 CENPEQ02224 2701 aa10.04□□□□□ -0.8
C9orf3-206ENST00000428313 PLA2G1BP04054 148 aaKnown RBP10.04□□□□□ -0.8
C9orf3-206ENST00000428313 LINC01554Q52M75 96 aa10.04□□□□□ -0.8
C9orf3-206ENST00000428313 HRES1P13985 223 aa10.03□□□□□ -0.8
C9orf3-206ENST00000428313 A0A087X002 238 aa10.03□□□□□ -0.8
C9orf3-206ENST00000428313 NAV2Q8IVL1 2488 aa10.02□□□□□ -0.81
C9orf3-206ENST00000428313 H3BS24 57 aa10.02□□□□□ -0.81
C9orf3-206ENST00000428313 LINC01556Q5JQF7 62 aa10.02□□□□□ -0.81
C9orf3-206ENST00000428313 Q6ZR54 194 aa10.02□□□□□ -0.81
C9orf3-206ENST00000428313 PRAC1Q96KF2 57 aa10.01□□□□□ -0.81
C9orf3-206ENST00000428313 POLQO75417 2590 aa10.01□□□□□ -0.81
C9orf3-206ENST00000428313 ZNF462Q96JM2 2506 aa10□□□□□ -0.81
C9orf3-206ENST00000428313 NF1P21359 2839 aa9.98□□□□□ -0.81
C9orf3-206ENST00000428313 DEFB131BA0A096LNP1 70 aa9.98□□□□□ -0.81
C9orf3-206ENST00000428313 IGKV2-24A0A0C4DH68 120 aa9.96□□□□□ -0.81
C9orf3-206ENST00000428313 KRTAP10-3P60369 221 aa9.96□□□□□ -0.81
C9orf3-206ENST00000428313 HECTD1Q9ULT8 2610 aa9.96□□□□□ -0.81
C9orf3-206ENST00000428313 H0Y9J4 135 aa9.96□□□□□ -0.82
C9orf3-206ENST00000428313 ANK3Q12955 4377 aaKnown RBP9.94□□□□□ -0.82
C9orf3-206ENST00000428313 SETD2Q9BYW2 2564 aaPredicted RBP9.94□□□□□ -0.82
C9orf3-206ENST00000428313 UBR5O95071 2799 aaPredicted RBP9.93□□□□□ -0.82
C9orf3-206ENST00000428313 SPRR1BP22528 89 aa9.93□□□□□ -0.82
C9orf3-206ENST00000428313 HIVEP2P31629 2446 aa9.92□□□□□ -0.82
C9orf3-206ENST00000428313 SONP18583 2426 aaKnown RBP9.91□□□□□ -0.82
C9orf3-206ENST00000428313 PRLHP81277 87 aa9.91□□□□□ -0.82
C9orf3-206ENST00000428313 ABCA12Q86UK0 2595 aa9.91□□□□□ -0.82
C9orf3-206ENST00000428313 ADM2Q7Z4H4 148 aa9.9□□□□□ -0.82
C9orf3-206ENST00000428313 ITPR3Q14573 2671 aa9.89□□□□□ -0.83
C9orf3-206ENST00000428313 RTL8CO15255 209 aa9.89□□□□□ -0.83
C9orf3-206ENST00000428313 DNAH10OSP0CZ25 163 aa9.87□□□□□ -0.83
C9orf3-206ENST00000428313 C8orf17Q9NRJ1 99 aa9.85□□□□□ -0.83
C9orf3-206ENST00000428313 ZNF469Q96JG9 3925 aaPredicted RBP9.85□□□□□ -0.83
C9orf3-206ENST00000428313 MDFIQ99750 246 aa9.84□□□□□ -0.83
C9orf3-206ENST00000428313 PRR26Q8N8Z3 221 aa9.83□□□□□ -0.84
C9orf3-206ENST00000428313 SPATA8Q6RVD6 105 aa9.82□□□□□ -0.84
C9orf3-206ENST00000428313 OTOGQ6ZRI0 2925 aa9.81□□□□□ -0.84
C9orf3-206ENST00000428313 Q96NJ1 140 aa9.81□□□□□ -0.84
C9orf3-206ENST00000428313 J3QKU1 62 aa9.8□□□□□ -0.84
C9orf3-206ENST00000428313 CASC10Q5T4H9 136 aa9.8□□□□□ -0.84
C9orf3-206ENST00000428313 UNC79Q9P2D8 2635 aa9.78□□□□□ -0.84
C9orf3-206ENST00000428313 ALMS1Q8TCU4 4167 aa9.78□□□□□ -0.84
C9orf3-206ENST00000428313 ACYP2P14621 99 aa9.77□□□□□ -0.84
C9orf3-206ENST00000428313 FLNAP21333 2647 aaKnown RBP9.77□□□□□ -0.85
C9orf3-206ENST00000428313 F8P00451 2351 aa9.76□□□□□ -0.85
C9orf3-206ENST00000428313 MRPL34Q9BQ48 92 aaKnown RBP9.76□□□□□ -0.85
C9orf3-206ENST00000428313 TENM2Q9NT68 2774 aa9.74□□□□□ -0.85
C9orf3-206ENST00000428313 CCDC168Q8NDH2 2452 aa9.74□□□□□ -0.85
C9orf3-206ENST00000428313 A0A1B0GVX0 72 aa9.74□□□□□ -0.85
C9orf3-206ENST00000428313 HIVEP1P15822 2718 aa9.73□□□□□ -0.85
C9orf3-206ENST00000428313 RETNLBQ9BQ08 111 aa9.72□□□□□ -0.85
C9orf3-206ENST00000428313 A0A096LNI7 61 aa9.72□□□□□ -0.85
C9orf3-206ENST00000428313 A0A1B0GU69 56 aa9.72□□□□□ -0.85
C9orf3-206ENST00000428313 IGHV6-1A0A0B4J1U7 121 aa9.69□□□□□ -0.86
C9orf3-206ENST00000428313 MTORP42345 2549 aa9.69□□□□□ -0.86
C9orf3-206ENST00000428313 MIR22HGQ0VDD5 57 aa9.68□□□□□ -0.86
C9orf3-206ENST00000428313 DMAC1Q96GE9 116 aa9.67□□□□□ -0.86
C9orf3-206ENST00000428313 PDZD2O15018 2839 aa9.67□□□□□ -0.86
C9orf3-206ENST00000428313 NOTCH2Q04721 2471 aa9.67□□□□□ -0.86
C9orf3-206ENST00000428313 UQCR11O14957 56 aa9.66□□□□□ -0.86
C9orf3-206ENST00000428313 CSAG1Q6PB30 78 aa9.66□□□□□ -0.86
C9orf3-206ENST00000428313 CDK2AP2O75956 126 aa9.66□□□□□ -0.86
C9orf3-206ENST00000428313 KRTAP13-3Q3SY46 172 aa9.66□□□□□ -0.86
C9orf3-206ENST00000428313 DNAH1Q9P2D7 4330 aa9.66□□□□□ -0.86
C9orf3-206ENST00000428313 SMR3AQ99954 134 aa9.65□□□□□ -0.87
C9orf3-206ENST00000428313 VWFP04275 2813 aa9.63□□□□□ -0.87
C9orf3-206ENST00000428313 KRTAP11-1Q8IUC1 163 aa9.63□□□□□ -0.87
C9orf3-206ENST00000428313 ACANP16112 2415 aa9.62□□□□□ -0.87
C9orf3-206ENST00000428313 TEP1Q99973 2627 aaKnown RBP9.61□□□□□ -0.87
C9orf3-206ENST00000428313 K7EIL1 84 aa9.59□□□□□ -0.87
C9orf3-206ENST00000428313 Q5W150 140 aa9.58□□□□□ -0.88
C9orf3-206ENST00000428313 ITPR2Q14571 2701 aa9.57□□□□□ -0.88
C9orf3-206ENST00000428313 KRTAP13-1Q8IUC0 172 aa9.57□□□□□ -0.88
C9orf3-206ENST00000428313 NOTCH2NLQ7Z3S9 236 aa9.56□□□□□ -0.88
C9orf3-206ENST00000428313 INAFM1C9JVW0 142 aa9.55□□□□□ -0.88
C9orf3-206ENST00000428313 PKD1L1Q8TDX9 2849 aa9.55□□□□□ -0.88
C9orf3-206ENST00000428313 IGLV9-49A0A0B4J1Y8 123 aa9.54□□□□□ -0.88
C9orf3-206ENST00000428313 ZNF861PO60384 105 aa9.53□□□□□ -0.88
C9orf3-206ENST00000428313 CHTF8P0CG12 524 aa9.53□□□□□ -0.88
C9orf3-206ENST00000428313 LINC00483Q53H64 154 aa9.52□□□□□ -0.89
C9orf3-206ENST00000428313 KRTAP10-11P60412 298 aa9.5□□□□□ -0.89
C9orf3-206ENST00000428313 SRRM2Q9UQ35 2752 aaKnown RBP9.49□□□□□ -0.89
C9orf3-206ENST00000428313 C1orf134Q5TEV5 83 aa9.47□□□□□ -0.89
C9orf3-206ENST00000428313 OXLD1Q5BKU9 147 aa9.45□□□□□ -0.9
C9orf3-206ENST00000428313 C14orf177Q52M58 125 aa9.43□□□□□ -0.9
C9orf3-206ENST00000428313 TRRAPQ9Y4A5 3859 aa9.43□□□□□ -0.9
C9orf3-206ENST00000428313 ZNF706Q9Y5V0 76 aaPredicted RBP9.42□□□□□ -0.9
C9orf3-206ENST00000428313 IGLV7-43P04211 117 aa9.41□□□□□ -0.9
C9orf3-206ENST00000428313 WWC2-AS2Q96NR7 200 aa9.41□□□□□ -0.9
C9orf3-206ENST00000428313 FAM229AH3BQW9 127 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms