RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 DMBT1Q9UGM3 2413 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-204ENST00000423058 CENPEQ02224 2701 aa4.22□□□□□ -1.73
SCN1A-204ENST00000423058 M0QZ58 72 aa4.21□□□□□ -1.74
SCN1A-204ENST00000423058 LINC01558Q9Y6Z2 57 aa4.2□□□□□ -1.74
SCN1A-204ENST00000423058 ROMO1P60602 79 aa4.2□□□□□ -1.74
SCN1A-204ENST00000423058 RPL37P61927 97 aaKnown RBP4.2□□□□□ -1.74
SCN1A-204ENST00000423058 KRTAP1-1Q07627 177 aa4.2□□□□□ -1.74
SCN1A-204ENST00000423058 LCE6AA0A183 80 aa4.2□□□□□ -1.74
SCN1A-204ENST00000423058 TEX15Q9BXT5 2789 aa4.19□□□□□ -1.74
SCN1A-204ENST00000423058 A0A087X002 238 aa4.19□□□□□ -1.74
SCN1A-204ENST00000423058 Q5W150 140 aa4.19□□□□□ -1.74
SCN1A-204ENST00000423058 Q8N9P0 234 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-204ENST00000423058 MMP24-AS1A0A0U1RRL7 71 aa4.18□□□□□ -1.74
SCN1A-204ENST00000423058 DNAH12Q6ZR08 3092 aa4.16□□□□□ -1.74
SCN1A-204ENST00000423058 CEP350Q5VT06 3117 aa4.16□□□□□ -1.74
SCN1A-204ENST00000423058 UNC79Q9P2D8 2635 aa4.15□□□□□ -1.75
SCN1A-204ENST00000423058 CHD6Q8TD26 2715 aa4.15□□□□□ -1.75
SCN1A-204ENST00000423058 ADM2Q7Z4H4 148 aa4.15□□□□□ -1.75
SCN1A-204ENST00000423058 GOLGB1Q14789 3259 aaKnown RBP4.14□□□□□ -1.75
SCN1A-204ENST00000423058 SPRR1BP22528 89 aa4.14□□□□□ -1.75
SCN1A-204ENST00000423058 SPRR1AP35321 89 aa4.14□□□□□ -1.75
SCN1A-204ENST00000423058 C5orf42Q9H799 3197 aa4.13□□□□□ -1.75
SCN1A-204ENST00000423058 LINC00472Q9H8W2 130 aa4.13□□□□□ -1.75
SCN1A-204ENST00000423058 COL6A5A8TX70 2615 aa4.11□□□□□ -1.75
SCN1A-204ENST00000423058 ITPR2Q14571 2701 aa4.11□□□□□ -1.75
SCN1A-204ENST00000423058 KRTAP10-1P60331 282 aa4.09□□□□□ -1.76
SCN1A-204ENST00000423058 PANO1I0J062 215 aa4.07□□□□□ -1.76
SCN1A-204ENST00000423058 Q5XG85 94 aa4.07□□□□□ -1.76
SCN1A-204ENST00000423058 RPS29P62273 56 aaKnown RBP4.06□□□□□ -1.76
SCN1A-204ENST00000423058 Q5VV11 94 aa4.06□□□□□ -1.76
SCN1A-204ENST00000423058 Q6ZR54 194 aa4.05□□□□□ -1.76
SCN1A-204ENST00000423058 KRTAP26-1Q6PEX3 210 aa4.05□□□□□ -1.76
SCN1A-204ENST00000423058 KRTAP10-2P60368 255 aa4.05□□□□□ -1.76
SCN1A-204ENST00000423058 STAB2Q8WWQ8 2551 aa4.04□□□□□ -1.76
SCN1A-204ENST00000423058 H3BS24 57 aa4.04□□□□□ -1.76
SCN1A-204ENST00000423058 C20orf166-AS1Q96NR2 134 aa4.04□□□□□ -1.76
SCN1A-204ENST00000423058 TEP1Q99973 2627 aaKnown RBP4.03□□□□□ -1.76
SCN1A-204ENST00000423058 A8MUU9 505 aa4.03□□□□□ -1.76
SCN1A-204ENST00000423058 BAHCC1Q9P281 2608 aa4.02□□□□□ -1.77
SCN1A-204ENST00000423058 PRAC1Q96KF2 57 aa4.02□□□□□ -1.77
SCN1A-204ENST00000423058 NOTCH1P46531 2555 aa4.02□□□□□ -1.77
SCN1A-204ENST00000423058 Q8NDZ9 215 aa4.01□□□□□ -1.77
SCN1A-204ENST00000423058 SETXQ7Z333 2677 aaKnown RBP4□□□□□ -1.77
SCN1A-204ENST00000423058 GCN1Q92616 2671 aaKnown RBP4□□□□□ -1.77
SCN1A-204ENST00000423058 KRTAP1-5Q9BYS1 174 aa4□□□□□ -1.77
SCN1A-204ENST00000423058 SPATA8Q6RVD6 105 aa3.99□□□□□ -1.77
SCN1A-204ENST00000423058 TNP1P09430 55 aa3.98□□□□□ -1.77
SCN1A-204ENST00000423058 PCNTO95613 3336 aa3.98□□□□□ -1.77
SCN1A-204ENST00000423058 KRTAP16-1A8MUX0 517 aa3.97□□□□□ -1.77
SCN1A-204ENST00000423058 CFAP54Q96N23 3096 aa3.97□□□□□ -1.77
SCN1A-204ENST00000423058 APCP25054 2843 aa3.96□□□□□ -1.78
SCN1A-204ENST00000423058 UTRNP46939 3433 aa3.96□□□□□ -1.78
SCN1A-204ENST00000423058 ZNF292O60281 2723 aa3.95□□□□□ -1.78
SCN1A-204ENST00000423058 NSD1Q96L73 2696 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-204ENST00000423058 A0A0C4DFX4 3053 aa3.93□□□□□ -1.78
SCN1A-204ENST00000423058 IGSF10Q6WRI0 2623 aa3.91□□□□□ -1.78
SCN1A-204ENST00000423058 KRTAP4-16G5E9R7 235 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-204ENST00000423058 KRTAP29-1A8MX34 341 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-204ENST00000423058 KRTAP21-3Q3LHN1 58 aa3.9□□□□□ -1.79
SCN1A-204ENST00000423058 KRTAP25-1Q3LHN0 102 aa3.88□□□□□ -1.79
SCN1A-204ENST00000423058 LAMA2P24043 3122 aaKnown RBP3.87□□□□□ -1.79
SCN1A-204ENST00000423058 MGAQ8IWI9 3026 aa3.87□□□□□ -1.79
SCN1A-204ENST00000423058 PP632Q6XCG6 107 aa3.87□□□□□ -1.79
SCN1A-204ENST00000423058 PRO2289Q9P1D8 64 aa3.87□□□□□ -1.79
SCN1A-204ENST00000423058 NOTCH2NLQ7Z3S9 236 aa3.86□□□□□ -1.79
SCN1A-204ENST00000423058 C10orf95Q9H7T3 257 aa3.85□□□□□ -1.79
SCN1A-204ENST00000423058 MAP1AP78559 2803 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-204ENST00000423058 A6NN06 94 aa3.84□□□□□ -1.79
SCN1A-204ENST00000423058 CYSTM1Q9H1C7 97 aa3.84□□□□□ -1.79
SCN1A-204ENST00000423058 Q6ZRN7 208 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-204ENST00000423058 WDFY4Q6ZS81 3184 aa3.83□□□□□ -1.8
SCN1A-204ENST00000423058 NBEAL2Q6ZNJ1 2754 aa3.83□□□□□ -1.8
SCN1A-204ENST00000423058 KRTAP10-8P60410 259 aa3.82□□□□□ -1.8
SCN1A-204ENST00000423058 FRYQ5TBA9 3013 aa3.81□□□□□ -1.8
SCN1A-204ENST00000423058 CRYBG3Q68DQ2 2970 aa3.81□□□□□ -1.8
SCN1A-204ENST00000423058 A8MU10 97 aa3.8□□□□□ -1.8
SCN1A-204ENST00000423058 XIRP2A4UGR9 3374 aa3.78□□□□□ -1.8
SCN1A-204ENST00000423058 P0C880 135 aa3.78□□□□□ -1.8
SCN1A-204ENST00000423058 CHD7Q9P2D1 2997 aa3.78□□□□□ -1.8
SCN1A-204ENST00000423058 UTP20O75691 2785 aaKnown RBP3.77□□□□□ -1.81
SCN1A-204ENST00000423058 KRTAP13-2Q52LG2 175 aa3.77□□□□□ -1.81
SCN1A-204ENST00000423058 NDUFAF8A1L188 74 aa3.76□□□□□ -1.81
SCN1A-204ENST00000423058 TRANK1O15050 2925 aa3.76□□□□□ -1.81
SCN1A-204ENST00000423058 TRIOO75962 3097 aa3.76□□□□□ -1.81
SCN1A-204ENST00000423058 PRUNE2Q8WUY3 3088 aa3.75□□□□□ -1.81
SCN1A-204ENST00000423058 MKI67P46013 3256 aaKnown RBP3.75□□□□□ -1.81
SCN1A-204ENST00000423058 ITPR1Q14643 2758 aa3.75□□□□□ -1.81
SCN1A-204ENST00000423058 UBR5O95071 2799 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-204ENST00000423058 REV3LO60673 3130 aa3.74□□□□□ -1.81
SCN1A-204ENST00000423058 VPS13AQ96RL7 3174 aa3.74□□□□□ -1.81
SCN1A-204ENST00000423058 KRTAP13-1Q8IUC0 172 aa3.73□□□□□ -1.81
SCN1A-204ENST00000423058 DSPP15924 2871 aaKnown RBP3.72□□□□□ -1.81
SCN1A-204ENST00000423058 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
SCN1A-204ENST00000423058 KRTAP11-1Q8IUC1 163 aa3.72□□□□□ -1.81
SCN1A-204ENST00000423058 TPRXLQ17RH7 258 aa3.72□□□□□ -1.81
SCN1A-204ENST00000423058 CELSR3Q9NYQ7 3312 aa3.71□□□□□ -1.82
SCN1A-204ENST00000423058 FRYLO94915 3013 aa3.7□□□□□ -1.82
SCN1A-204ENST00000423058 KALRNO60229 2985 aa3.69□□□□□ -1.82
SCN1A-204ENST00000423058 LRBAP50851 2863 aa3.69□□□□□ -1.82
SCN1A-204ENST00000423058 TENM1Q9UKZ4 2725 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms