RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 UQCR10Q9UDW1 63 aa11.7□□□□□ -0.54
VSX1-204ENST00000409958 PRO1854Q9UHT4 67 aa11.7□□□□□ -0.54
VSX1-204ENST00000409958 HRCT1Q6UXD1 115 aa11.69□□□□□ -0.54
VSX1-204ENST00000409958 LIMD2Q9BT23 127 aa11.68□□□□□ -0.54
VSX1-204ENST00000409958 CDIP1Q9H305 208 aa11.68□□□□□ -0.54
VSX1-204ENST00000409958 H0YGX0 51 aa11.67□□□□□ -0.54
VSX1-204ENST00000409958 F8WEM9 126 aa11.65□□□□□ -0.54
VSX1-204ENST00000409958 PPDPFLQ8WWR9 84 aa11.65□□□□□ -0.54
VSX1-204ENST00000409958 SNCGO76070 127 aa11.63□□□□□ -0.55
VSX1-204ENST00000409958 KRTAP13-3Q3SY46 172 aa11.63□□□□□ -0.55
VSX1-204ENST00000409958 A0A0G2JQZ4 141 aa11.6□□□□□ -0.55
VSX1-204ENST00000409958 FAM218AQ96MZ4 157 aa11.6□□□□□ -0.55
VSX1-204ENST00000409958 IGLV8-61A0A075B6I0 122 aa11.6□□□□□ -0.55
VSX1-204ENST00000409958 OCIAD2Q56VL3 154 aa11.6□□□□□ -0.55
VSX1-204ENST00000409958 Q5XG85 94 aa11.6□□□□□ -0.55
VSX1-204ENST00000409958 A0A1B0GX51 115 aa11.59□□□□□ -0.55
VSX1-204ENST00000409958 TRIAP1O43715 76 aa11.58□□□□□ -0.56
VSX1-204ENST00000409958 Q6JHZ5 121 aa11.58□□□□□ -0.56
VSX1-204ENST00000409958 SNHG12Q9BXW3 62 aa11.58□□□□□ -0.56
VSX1-204ENST00000409958 K7ERJ3 54 aa11.57□□□□□ -0.56
VSX1-204ENST00000409958 CLEC2BQ92478 149 aa11.54□□□□□ -0.56
VSX1-204ENST00000409958 MUC17Q685J3 4493 aa11.54□□□□□ -0.56
VSX1-204ENST00000409958 IGFL1Q6UW32 110 aa11.53□□□□□ -0.56
VSX1-204ENST00000409958 GHRHP01286 108 aa11.52□□□□□ -0.57
VSX1-204ENST00000409958 SMIM6P0DI80 62 aa11.52□□□□□ -0.57
VSX1-204ENST00000409958 MUC2Q02817 5179 aa11.51□□□□□ -0.57
VSX1-204ENST00000409958 PSMB2P49721 201 aa11.51□□□□□ -0.57
VSX1-204ENST00000409958 TCL1BO95988 128 aa11.49□□□□□ -0.57
VSX1-204ENST00000409958 COX6CP09669 75 aa11.49□□□□□ -0.57
VSX1-204ENST00000409958 C1orf195Q5TG92 126 aa11.48□□□□□ -0.57
VSX1-204ENST00000409958 H3BUT2 72 aa11.47□□□□□ -0.57
VSX1-204ENST00000409958 TRBV7-7A0A0K0K1E9 115 aa11.46□□□□□ -0.57
VSX1-204ENST00000409958 NDUFV3P56181 108 aaKnown RBP11.46□□□□□ -0.57
VSX1-204ENST00000409958 DNAL4O96015 105 aa11.44□□□□□ -0.58
VSX1-204ENST00000409958 FABP2P12104 132 aa11.43□□□□□ -0.58
VSX1-204ENST00000409958 ASB16-AS1Q495Z4 193 aa11.42□□□□□ -0.58
VSX1-204ENST00000409958 XP32Q5T750 250 aa11.42□□□□□ -0.58
VSX1-204ENST00000409958 H3BQ85 93 aa11.41□□□□□ -0.58
VSX1-204ENST00000409958 M0R143 59 aa11.41□□□□□ -0.58
VSX1-204ENST00000409958 ORMDL1Q9P0S3 153 aa11.4□□□□□ -0.58
VSX1-204ENST00000409958 H3BMG7 143 aa11.39□□□□□ -0.59
VSX1-204ENST00000409958 SEC61BP60468 96 aaKnown RBP11.39□□□□□ -0.59
VSX1-204ENST00000409958 Q6Q795 121 aa11.38□□□□□ -0.59
VSX1-204ENST00000409958 LOC105371267A0A1B0GV96 52 aa11.37□□□□□ -0.59
VSX1-204ENST00000409958 SCGB1C2P0DMR2 95 aa11.37□□□□□ -0.59
VSX1-204ENST00000409958 C9orf92A6NGG3 77 aa11.36□□□□□ -0.59
VSX1-204ENST00000409958 A0A0U1RQV1 116 aa11.35□□□□□ -0.59
VSX1-204ENST00000409958 TMEM256-PLSCR3K7ERE1 68 aa11.35□□□□□ -0.59
VSX1-204ENST00000409958 TRACP01848 142 aa11.35□□□□□ -0.59
VSX1-204ENST00000409958 TEN1Q86WV5 123 aa11.35□□□□□ -0.59
VSX1-204ENST00000409958 TSTD3H0UI37 97 aa11.34□□□□□ -0.59
VSX1-204ENST00000409958 LST1O00453 97 aa11.34□□□□□ -0.59
VSX1-204ENST00000409958 SS18L2Q9UHA2 77 aa11.31□□□□□ -0.6
VSX1-204ENST00000409958 UBE2V1Q13404 147 aa11.3□□□□□ -0.6
VSX1-204ENST00000409958 ANKRD29Q8N6D5 301 aa11.28□□□□□ -0.6
VSX1-204ENST00000409958 A0A1W2PNM2 257 aa11.27□□□□□ -0.61
VSX1-204ENST00000409958 A0A087WSZ3 146 aa11.26□□□□□ -0.61
VSX1-204ENST00000409958 A0A1B0GV72 72 aa11.24□□□□□ -0.61
VSX1-204ENST00000409958 FAT4Q6V0I7 4981 aa11.23□□□□□ -0.61
VSX1-204ENST00000409958 NAA38Q9BRA0 125 aaKnown RBP11.23□□□□□ -0.61
VSX1-204ENST00000409958 KRTAP4-1Q9BYQ7 146 aa11.23□□□□□ -0.61
VSX1-204ENST00000409958 TRBV7-4A0A0J9YYF1 115 aa11.22□□□□□ -0.61
VSX1-204ENST00000409958 ATXN8Q156A1 80 aa11.21□□□□□ -0.61
VSX1-204ENST00000409958 BAALC-AS2P0C853 105 aa11.2□□□□□ -0.62
VSX1-204ENST00000409958 BATFQ16520 125 aa11.19□□□□□ -0.62
VSX1-204ENST00000409958 PCOTHQ58A44 107 aa11.19□□□□□ -0.62
VSX1-204ENST00000409958 CCKP06307 115 aa11.17□□□□□ -0.62
VSX1-204ENST00000409958 RPL37P61927 97 aaKnown RBP11.17□□□□□ -0.62
VSX1-204ENST00000409958 RBM3P98179 157 aaKnown RBP11.17□□□□□ -0.62
VSX1-204ENST00000409958 LYRM7Q5U5X0 104 aa11.16□□□□□ -0.62
VSX1-204ENST00000409958 Q96NJ1 140 aa11.16□□□□□ -0.62
VSX1-204ENST00000409958 OBSCN-AS1Q96MR7 158 aa11.13□□□□□ -0.63
VSX1-204ENST00000409958 DSCR8Q96T75 97 aa11.13□□□□□ -0.63
VSX1-204ENST00000409958 TRBV20-1A0A075B6N2 111 aa11.11□□□□□ -0.63
VSX1-204ENST00000409958 LCE2AQ5TA79 106 aaPredicted RBP11.09□□□□□ -0.63
VSX1-204ENST00000409958 C9orf118A6NHY6 69 aa11.08□□□□□ -0.64
VSX1-204ENST00000409958 C9JAW5 83 aa11.08□□□□□ -0.64
VSX1-204ENST00000409958 VPS25Q9BRG1 176 aa11.08□□□□□ -0.64
VSX1-204ENST00000409958 JMJD7-PLA2G4BH0Y9G9 81 aa11.07□□□□□ -0.64
VSX1-204ENST00000409958 SIGMAR1Q99720 223 aa11.07□□□□□ -0.64
VSX1-204ENST00000409958 TAX1BP3O14907 124 aa11.06□□□□□ -0.64
VSX1-204ENST00000409958 Q75L30 129 aa11.06□□□□□ -0.64
VSX1-204ENST00000409958 IGKV4-1P06312 121 aa11.05□□□□□ -0.64
VSX1-204ENST00000409958 LINC00472Q9H8W2 130 aa11.05□□□□□ -0.64
VSX1-204ENST00000409958 C21orf62-AS1Q17RA5 79 aa11.03□□□□□ -0.64
VSX1-204ENST00000409958 A0A1W2PPM0 123 aa11.01□□□□□ -0.65
VSX1-204ENST00000409958 LOC110117498A0A087WWA1 95 aa11□□□□□ -0.65
VSX1-204ENST00000409958 DEFB116Q30KQ4 102 aa10.99□□□□□ -0.65
VSX1-204ENST00000409958 ATP11AUNQ6ZP68 121 aa10.99□□□□□ -0.65
VSX1-204ENST00000409958 Q6ZQT0 140 aa10.99□□□□□ -0.65
VSX1-204ENST00000409958 C20orf166-AS1Q96NR2 134 aa10.99□□□□□ -0.65
VSX1-204ENST00000409958 PDE6GP18545 87 aa10.98□□□□□ -0.65
VSX1-204ENST00000409958 DSCR10P59022 87 aa10.98□□□□□ -0.65
VSX1-204ENST00000409958 A0A1B0GW54 56 aa10.96□□□□□ -0.65
VSX1-204ENST00000409958 A8MUU9 505 aa10.96□□□□□ -0.65
VSX1-204ENST00000409958 LINC00313P59037 77 aa10.95□□□□□ -0.66
VSX1-204ENST00000409958 H3BT86 120 aa10.94□□□□□ -0.66
VSX1-204ENST00000409958 C14orf132Q9NPU4 83 aa10.94□□□□□ -0.66
VSX1-204ENST00000409958 KRTAP19-2Q3LHN2 52 aa10.92□□□□□ -0.66
VSX1-204ENST00000409958 J3KT08 172 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms