RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 SPTBN4Q9H254 2564 aa6.01□□□□□ -1.45
SMAD9-203ENST00000399275 MMP24-AS1A0A0U1RRL7 71 aa6□□□□□ -1.45
SMAD9-203ENST00000399275 WDFY3Q8IZQ1 3526 aa5.99□□□□□ -1.45
SMAD9-203ENST00000399275 AKAP13Q12802 2813 aa5.98□□□□□ -1.45
SMAD9-203ENST00000399275 USP9XQ93008 2570 aaPredicted RBP5.98□□□□□ -1.45
SMAD9-203ENST00000399275 DSPP15924 2871 aaKnown RBP5.97□□□□□ -1.45
SMAD9-203ENST00000399275 C9orf92A6NGG3 77 aa5.97□□□□□ -1.45
SMAD9-203ENST00000399275 A8MU10 97 aa5.97□□□□□ -1.45
SMAD9-203ENST00000399275 CR1P17927 2039 aa5.95□□□□□ -1.46
SMAD9-203ENST00000399275 ZFYVE26Q68DK2 2539 aa5.95□□□□□ -1.46
SMAD9-203ENST00000399275 NBDYA0A0U1RRE5 68 aa5.95□□□□□ -1.46
SMAD9-203ENST00000399275 SPRR1AP35321 89 aa5.95□□□□□ -1.46
SMAD9-203ENST00000399275 TNRC18O15417 2968 aaPredicted RBP5.95□□□□□ -1.46
SMAD9-203ENST00000399275 ZNF861PO60384 105 aa5.95□□□□□ -1.46
SMAD9-203ENST00000399275 TNP2Q05952 138 aa5.94□□□□□ -1.46
SMAD9-203ENST00000399275 A0A087X002 238 aa5.94□□□□□ -1.46
SMAD9-203ENST00000399275 KRTAP10-3P60369 221 aa5.94□□□□□ -1.46
SMAD9-203ENST00000399275 C20orf166-AS1Q96NR2 134 aa5.93□□□□□ -1.46
SMAD9-203ENST00000399275 ANKRD17O75179 2603 aaKnown RBP5.93□□□□□ -1.46
SMAD9-203ENST00000399275 H1FX-AS1Q4G0G2 97 aa5.93□□□□□ -1.46
SMAD9-203ENST00000399275 Q6ZR54 194 aa5.93□□□□□ -1.46
SMAD9-203ENST00000399275 PIEZO1Q92508 2521 aa5.93□□□□□ -1.46
SMAD9-203ENST00000399275 NBEAQ8NFP9 2946 aa5.92□□□□□ -1.46
SMAD9-203ENST00000399275 USP9YO00507 2555 aaPredicted RBP5.92□□□□□ -1.46
SMAD9-203ENST00000399275 BOD1L1Q8NFC6 3051 aa5.92□□□□□ -1.46
SMAD9-203ENST00000399275 FRYQ5TBA9 3013 aa5.91□□□□□ -1.46
SMAD9-203ENST00000399275 ANAPC11Q9NYG5 84 aa5.91□□□□□ -1.46
SMAD9-203ENST00000399275 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.91□□□□□ -1.46
SMAD9-203ENST00000399275 ZCCHC13Q8WW36 166 aaKnown RBP5.91□□□□□ -1.46
SMAD9-203ENST00000399275 DMDP11532 3685 aa5.91□□□□□ -1.46
SMAD9-203ENST00000399275 LINC00304Q8N9R0 145 aa5.9□□□□□ -1.47
SMAD9-203ENST00000399275 Q5W150 140 aa5.89□□□□□ -1.47
SMAD9-203ENST00000399275 ABCA12Q86UK0 2595 aa5.89□□□□□ -1.47
SMAD9-203ENST00000399275 CASC10Q5T4H9 136 aa5.89□□□□□ -1.47
SMAD9-203ENST00000399275 SETD2Q9BYW2 2564 aaPredicted RBP5.88□□□□□ -1.47
SMAD9-203ENST00000399275 PLAC4Q8WY50 150 aa5.88□□□□□ -1.47
SMAD9-203ENST00000399275 COX6B2Q6YFQ2 88 aa5.88□□□□□ -1.47
SMAD9-203ENST00000399275 KRTAP10-11P60412 298 aa5.88□□□□□ -1.47
SMAD9-203ENST00000399275 ZNF292O60281 2723 aa5.87□□□□□ -1.47
SMAD9-203ENST00000399275 KRTAP1-3Q8IUG1 177 aa5.87□□□□□ -1.47
SMAD9-203ENST00000399275 A8MUU9 505 aa5.86□□□□□ -1.47
SMAD9-203ENST00000399275 LINC00472Q9H8W2 130 aa5.86□□□□□ -1.47
SMAD9-203ENST00000399275 PSORS1C2Q9UIG4 136 aa5.86□□□□□ -1.47
SMAD9-203ENST00000399275 SPRR1BP22528 89 aa5.85□□□□□ -1.47
SMAD9-203ENST00000399275 LCE6AA0A183 80 aa5.84□□□□□ -1.47
SMAD9-203ENST00000399275 LOC400499M0QZD8 3231 aa5.82□□□□□ -1.48
SMAD9-203ENST00000399275 KRTAP24-1Q3LI83 254 aa5.82□□□□□ -1.48
SMAD9-203ENST00000399275 KRTAP26-1Q6PEX3 210 aa5.82□□□□□ -1.48
SMAD9-203ENST00000399275 ZFHX4Q86UP3 3567 aa5.81□□□□□ -1.48
SMAD9-203ENST00000399275 KRTAP1-1Q07627 177 aa5.81□□□□□ -1.48
SMAD9-203ENST00000399275 DMBT1Q9UGM3 2413 aaPredicted RBP5.8□□□□□ -1.48
SMAD9-203ENST00000399275 KRTAP29-1A8MX34 341 aaPredicted RBP5.8□□□□□ -1.48
SMAD9-203ENST00000399275 LRBAP50851 2863 aa5.79□□□□□ -1.48
SMAD9-203ENST00000399275 ADGRG4Q8IZF6 3080 aa5.79□□□□□ -1.48
SMAD9-203ENST00000399275 R4GN34 69 aa5.79□□□□□ -1.48
SMAD9-203ENST00000399275 KRTAP4-16G5E9R7 235 aaPredicted RBP5.78□□□□□ -1.48
SMAD9-203ENST00000399275 PANO1I0J062 215 aa5.78□□□□□ -1.48
SMAD9-203ENST00000399275 S4R3F8 94 aa5.78□□□□□ -1.48
SMAD9-203ENST00000399275 A0A087WTM6 91 aa5.77□□□□□ -1.49
SMAD9-203ENST00000399275 JMJD1CQ15652 2540 aa5.77□□□□□ -1.49
SMAD9-203ENST00000399275 ASPMQ8IZT6 3477 aa5.76□□□□□ -1.49
SMAD9-203ENST00000399275 MTORP42345 2549 aa5.75□□□□□ -1.49
SMAD9-203ENST00000399275 DMXL1Q9Y485 3027 aa5.75□□□□□ -1.49
SMAD9-203ENST00000399275 K7EIL1 84 aa5.75□□□□□ -1.49
SMAD9-203ENST00000399275 KRTAP11-1Q8IUC1 163 aa5.74□□□□□ -1.49
SMAD9-203ENST00000399275 DMXL2Q8TDJ6 3036 aa5.73□□□□□ -1.49
SMAD9-203ENST00000399275 KALRNO60229 2985 aa5.73□□□□□ -1.49
SMAD9-203ENST00000399275 J3QL48 77 aa5.72□□□□□ -1.49
SMAD9-203ENST00000399275 ZZEF1O43149 2961 aa5.71□□□□□ -1.5
SMAD9-203ENST00000399275 LAMA5O15230 3695 aa5.7□□□□□ -1.5
SMAD9-203ENST00000399275 ATMQ13315 3056 aa5.69□□□□□ -1.5
SMAD9-203ENST00000399275 TACC2O95359 2948 aa5.68□□□□□ -1.5
SMAD9-203ENST00000399275 EPG5Q9HCE0 2579 aa5.68□□□□□ -1.5
SMAD9-203ENST00000399275 SMG1Q96Q15 3661 aaKnown RBP5.68□□□□□ -1.5
SMAD9-203ENST00000399275 MUC3AQ02505 3323 aa5.67□□□□□ -1.5
SMAD9-203ENST00000399275 M0QZ58 72 aa5.67□□□□□ -1.5
SMAD9-203ENST00000399275 MAP1AP78559 2803 aaPredicted RBP5.66□□□□□ -1.5
SMAD9-203ENST00000399275 FASNP49327 2511 aaKnown RBP5.65□□□□□ -1.5
SMAD9-203ENST00000399275 FLNAP21333 2647 aaKnown RBP5.64□□□□□ -1.51
SMAD9-203ENST00000399275 NOTCH2NLQ7Z3S9 236 aa5.64□□□□□ -1.51
SMAD9-203ENST00000399275 Q6ZSA8 131 aa5.64□□□□□ -1.51
SMAD9-203ENST00000399275 CFAP47Q6ZTR5 3102 aa5.63□□□□□ -1.51
SMAD9-203ENST00000399275 PLAC8Q9NZF1 115 aa5.63□□□□□ -1.51
SMAD9-203ENST00000399275 CENPEQ02224 2701 aa5.62□□□□□ -1.51
SMAD9-203ENST00000399275 DCHS1Q96JQ0 3298 aa5.62□□□□□ -1.51
SMAD9-203ENST00000399275 C10orf95Q9H7T3 257 aa5.62□□□□□ -1.51
SMAD9-203ENST00000399275 WWC2-AS2Q96NR7 200 aa5.62□□□□□ -1.51
SMAD9-203ENST00000399275 RELNP78509 3460 aa5.6□□□□□ -1.51
SMAD9-203ENST00000399275 HRNRQ86YZ3 2850 aaPredicted RBP5.6□□□□□ -1.51
SMAD9-203ENST00000399275 ITPR3Q14573 2671 aa5.59□□□□□ -1.51
SMAD9-203ENST00000399275 CSMD1Q96PZ7 3565 aa5.58□□□□□ -1.52
SMAD9-203ENST00000399275 IGSF10Q6WRI0 2623 aa5.56□□□□□ -1.52
SMAD9-203ENST00000399275 COL12A1Q99715 3063 aa5.56□□□□□ -1.52
SMAD9-203ENST00000399275 HECTD1Q9ULT8 2610 aa5.55□□□□□ -1.52
SMAD9-203ENST00000399275 KRTAP1-5Q9BYS1 174 aa5.54□□□□□ -1.52
SMAD9-203ENST00000399275 SPENQ96T58 3664 aaKnown RBP5.54□□□□□ -1.52
SMAD9-203ENST00000399275 PP632Q6XCG6 107 aa5.54□□□□□ -1.52
SMAD9-203ENST00000399275 CHD6Q8TD26 2715 aa5.54□□□□□ -1.52
SMAD9-203ENST00000399275 KRTAP7-1Q8IUC3 87 aa5.54□□□□□ -1.52
SMAD9-203ENST00000399275 P0C880 135 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms