RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 PRLHP81277 87 aa6.25□□□□□ -1.41
COL17A1-203ENST00000393211 SPANXA2-OT1Q8N9U9 137 aa6.25□□□□□ -1.41
COL17A1-203ENST00000393211 BRK1Q8WUW1 75 aa6.25□□□□□ -1.41
COL17A1-203ENST00000393211 TRAV22A0A0B4J277 110 aa6.24□□□□□ -1.41
COL17A1-203ENST00000393211 PRR15Q8IV56 129 aa6.24□□□□□ -1.41
COL17A1-203ENST00000393211 V9GYY9 64 aa6.24□□□□□ -1.41
COL17A1-203ENST00000393211 TENM3Q9P273 2699 aa6.23□□□□□ -1.41
COL17A1-203ENST00000393211 IGKV2-24A0A0C4DH68 120 aa6.23□□□□□ -1.41
COL17A1-203ENST00000393211 A8MWP4 228 aa6.23□□□□□ -1.41
COL17A1-203ENST00000393211 WFDC13Q8IUB5 93 aa6.23□□□□□ -1.41
COL17A1-203ENST00000393211 CASC2Q6XLA1 102 aa6.22□□□□□ -1.41
COL17A1-203ENST00000393211 LINC00472Q9H8W2 130 aa6.22□□□□□ -1.41
COL17A1-203ENST00000393211 PKD1L1Q8TDX9 2849 aa6.22□□□□□ -1.41
COL17A1-203ENST00000393211 TRRAPQ9Y4A5 3859 aa6.22□□□□□ -1.41
COL17A1-203ENST00000393211 A0A0G2JQZ4 141 aa6.21□□□□□ -1.42
COL17A1-203ENST00000393211 K7EIL1 84 aa6.21□□□□□ -1.42
COL17A1-203ENST00000393211 B9D2Q9BPU9 175 aa6.21□□□□□ -1.42
COL17A1-203ENST00000393211 DEFB116Q30KQ4 102 aa6.2□□□□□ -1.42
COL17A1-203ENST00000393211 LINC00208Q96KT6 92 aa6.2□□□□□ -1.42
COL17A1-203ENST00000393211 KRTAP1-5Q9BYS1 174 aa6.2□□□□□ -1.42
COL17A1-203ENST00000393211 H0Y9P7 68 aa6.19□□□□□ -1.42
COL17A1-203ENST00000393211 RPL37AP61513 92 aaKnown RBP6.18□□□□□ -1.42
COL17A1-203ENST00000393211 PHF5AQ7RTV0 110 aaKnown RBP6.18□□□□□ -1.42
COL17A1-203ENST00000393211 C9orf163Q8N9P6 203 aa6.18□□□□□ -1.42
COL17A1-203ENST00000393211 UBE2DNLQ8IWF7 75 aa6.17□□□□□ -1.42
COL17A1-203ENST00000393211 APLNQ9ULZ1 77 aa6.17□□□□□ -1.42
COL17A1-203ENST00000393211 KRTAP11-1Q8IUC1 163 aa6.16□□□□□ -1.42
COL17A1-203ENST00000393211 DNAH3Q8TD57 4116 aa6.16□□□□□ -1.42
COL17A1-203ENST00000393211 C1orf195Q5TG92 126 aa6.15□□□□□ -1.42
COL17A1-203ENST00000393211 KRTAP13-1Q8IUC0 172 aa6.15□□□□□ -1.42
COL17A1-203ENST00000393211 DNAH1Q9P2D7 4330 aa6.15□□□□□ -1.42
COL17A1-203ENST00000393211 FBN1P35555 2871 aaKnown RBP6.14□□□□□ -1.43
COL17A1-203ENST00000393211 LRCOL1A6NCL2 159 aa6.14□□□□□ -1.43
COL17A1-203ENST00000393211 PRB2P02812 416 aaPredicted RBP6.14□□□□□ -1.43
COL17A1-203ENST00000393211 TP53AIP1Q9HCN2 124 aa6.14□□□□□ -1.43
COL17A1-203ENST00000393211 MMP24-AS1A0A0U1RRL7 71 aa6.14□□□□□ -1.43
COL17A1-203ENST00000393211 CHTF8P0CG12 524 aa6.14□□□□□ -1.43
COL17A1-203ENST00000393211 MOBPQ13875 183 aa6.13□□□□□ -1.43
COL17A1-203ENST00000393211 PRR4Q16378 134 aa6.13□□□□□ -1.43
COL17A1-203ENST00000393211 ASB16-AS1Q495Z4 193 aa6.13□□□□□ -1.43
COL17A1-203ENST00000393211 LIMD2Q9BT23 127 aa6.13□□□□□ -1.43
COL17A1-203ENST00000393211 IGLV7-46A0A075B6I9 117 aa6.1□□□□□ -1.43
COL17A1-203ENST00000393211 LINC00483Q53H64 154 aa6.1□□□□□ -1.43
COL17A1-203ENST00000393211 NBDYA0A0U1RRE5 68 aa6.1□□□□□ -1.43
COL17A1-203ENST00000393211 PSPHP1O15172 72 aa6.1□□□□□ -1.43
COL17A1-203ENST00000393211 MDFIQ99750 246 aa6.1□□□□□ -1.43
COL17A1-203ENST00000393211 ZNF706Q9Y5V0 76 aaPredicted RBP6.1□□□□□ -1.43
COL17A1-203ENST00000393211 Q8N9P0 234 aaPredicted RBP6.09□□□□□ -1.43
COL17A1-203ENST00000393211 Q96NJ1 140 aa6.09□□□□□ -1.43
COL17A1-203ENST00000393211 CMYA5Q8N3K9 4069 aa6.09□□□□□ -1.44
COL17A1-203ENST00000393211 ANK2Q01484 3957 aa6.08□□□□□ -1.44
COL17A1-203ENST00000393211 A8MUN3 132 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 C4orf48Q5BLP8 95 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 Q6ZR54 194 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 Q6ZRN7 208 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-203ENST00000393211 SPACA4Q8TDM5 124 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 Q5VV11 94 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 C8orf17Q9NRJ1 99 aa6.07□□□□□ -1.44
COL17A1-203ENST00000393211 STAB1Q9NY15 2570 aa6.06□□□□□ -1.44
COL17A1-203ENST00000393211 NUPR2A6NF83 97 aa6.05□□□□□ -1.44
COL17A1-203ENST00000393211 LOC101927531A0A1B0GV80 90 aa6.04□□□□□ -1.44
COL17A1-203ENST00000393211 A0A1B0GVX0 72 aa6.04□□□□□ -1.44
COL17A1-203ENST00000393211 COA5Q86WW8 74 aa6.04□□□□□ -1.44
COL17A1-203ENST00000393211 DNHD1Q96M86 4753 aa6.04□□□□□ -1.44
COL17A1-203ENST00000393211 IGLV9-49A0A0B4J1Y8 123 aa6.03□□□□□ -1.44
COL17A1-203ENST00000393211 PANO1I0J062 215 aa6.03□□□□□ -1.44
COL17A1-203ENST00000393211 COL6A5A8TX70 2615 aa6.03□□□□□ -1.44
COL17A1-203ENST00000393211 CDK2AP2O75956 126 aa6.03□□□□□ -1.44
COL17A1-203ENST00000393211 Q75L30 129 aa6.02□□□□□ -1.45
COL17A1-203ENST00000393211 WWC2-AS2Q96NR7 200 aa6.02□□□□□ -1.45
COL17A1-203ENST00000393211 HUWE1Q7Z6Z7 4374 aaKnown RBP6.02□□□□□ -1.45
COL17A1-203ENST00000393211 NOTCH1P46531 2555 aa6.01□□□□□ -1.45
COL17A1-203ENST00000393211 PMAIP1Q13794 54 aa6.01□□□□□ -1.45
COL17A1-203ENST00000393211 MRPL34Q9BQ48 92 aaKnown RBP6.01□□□□□ -1.45
COL17A1-203ENST00000393211 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.01□□□□□ -1.45
COL17A1-203ENST00000393211 CHKB-CPT1BH3BT56 60 aa6□□□□□ -1.45
COL17A1-203ENST00000393211 PRR15LQ9BU68 103 aa6□□□□□ -1.45
COL17A1-203ENST00000393211 IGLV5-52A0A0A0MRZ9 124 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 CD164Q04900 197 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 A0A087WTM6 91 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 IGHV6-1A0A0B4J1U7 121 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 ZNF861PO60384 105 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 KRTAP21-3Q3LHN1 58 aa5.99□□□□□ -1.45
COL17A1-203ENST00000393211 PLAC8Q9NZF1 115 aa5.98□□□□□ -1.45
COL17A1-203ENST00000393211 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
COL17A1-203ENST00000393211 NBEAL1Q6ZS30 2694 aa5.98□□□□□ -1.45
COL17A1-203ENST00000393211 PCOTHQ58A44 107 aa5.97□□□□□ -1.45
COL17A1-203ENST00000393211 PSORS1C2Q9UIG4 136 aa5.97□□□□□ -1.45
COL17A1-203ENST00000393211 NDUFS5O43920 106 aa5.96□□□□□ -1.45
COL17A1-203ENST00000393211 ATP11AUNQ6ZP68 121 aa5.96□□□□□ -1.46
COL17A1-203ENST00000393211 RTL8CO15255 209 aa5.95□□□□□ -1.46
COL17A1-203ENST00000393211 LCE2BO14633 110 aa5.94□□□□□ -1.46
COL17A1-203ENST00000393211 C8orf87E5RJ46 101 aa5.92□□□□□ -1.46
COL17A1-203ENST00000393211 HRES1P13985 223 aa5.92□□□□□ -1.46
COL17A1-203ENST00000393211 CDC42SE1Q9NRR8 79 aa5.92□□□□□ -1.46
COL17A1-203ENST00000393211 DYNC2H1Q8NCM8 4307 aaKnown RBP5.92□□□□□ -1.46
COL17A1-203ENST00000393211 A6NED7 52 aa5.92□□□□□ -1.46
COL17A1-203ENST00000393211 TENM2Q9NT68 2774 aa5.91□□□□□ -1.46
COL17A1-203ENST00000393211 STAB2Q8WWQ8 2551 aa5.91□□□□□ -1.46
COL17A1-203ENST00000393211 SRRM2Q9UQ35 2752 aaKnown RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms