RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 IGLV8-61A0A075B6I0 122 aa13.33□□□□□ -0.28
UPF3A-202ENST00000375299 A0A087WSZ3 146 aa13.32□□□□□ -0.28
UPF3A-202ENST00000375299 MP68P56378 58 aa13.32□□□□□ -0.28
UPF3A-202ENST00000375299 PRLHP81277 87 aa13.3□□□□□ -0.28
UPF3A-202ENST00000375299 TRAV22A0A0B4J277 110 aa13.29□□□□□ -0.28
UPF3A-202ENST00000375299 PRR15Q8IV56 129 aa13.27□□□□□ -0.29
UPF3A-202ENST00000375299 KRTAP29-1A8MX34 341 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-202ENST00000375299 RPL37AP61513 92 aaKnown RBP13.27□□□□□ -0.29
UPF3A-202ENST00000375299 MAST4O15021 2626 aa13.25□□□□□ -0.29
UPF3A-202ENST00000375299 PSPHP1O15172 72 aa13.25□□□□□ -0.29
UPF3A-202ENST00000375299 LINC00208Q96KT6 92 aa13.25□□□□□ -0.29
UPF3A-202ENST00000375299 A0A096LNI7 61 aa13.24□□□□□ -0.29
UPF3A-202ENST00000375299 UBE2AP49459 152 aa13.23□□□□□ -0.29
UPF3A-202ENST00000375299 NOTCH1P46531 2555 aa13.22□□□□□ -0.29
UPF3A-202ENST00000375299 IGKV2-24A0A0C4DH68 120 aa13.22□□□□□ -0.29
UPF3A-202ENST00000375299 B9D2Q9BPU9 175 aa13.22□□□□□ -0.29
UPF3A-202ENST00000375299 C16orf90A8MZG2 172 aa13.21□□□□□ -0.29
UPF3A-202ENST00000375299 PRB2P02812 416 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-202ENST00000375299 CASC2Q6XLA1 102 aa13.2□□□□□ -0.3
UPF3A-202ENST00000375299 H0Y9P7 68 aa13.2□□□□□ -0.3
UPF3A-202ENST00000375299 V9GYY9 64 aa13.2□□□□□ -0.3
UPF3A-202ENST00000375299 H3BPC8 53 aa13.19□□□□□ -0.3
UPF3A-202ENST00000375299 SPANXA2-OT1Q8N9U9 137 aa13.18□□□□□ -0.3
UPF3A-202ENST00000375299 CNBPP62633 177 aaKnown RBP13.17□□□□□ -0.3
UPF3A-202ENST00000375299 HUWE1Q7Z6Z7 4374 aaKnown RBP13.15□□□□□ -0.3
UPF3A-202ENST00000375299 A8MWP4 228 aa13.14□□□□□ -0.31
UPF3A-202ENST00000375299 A8MUN3 132 aa13.14□□□□□ -0.31
UPF3A-202ENST00000375299 SPRR1BP22528 89 aa13.14□□□□□ -0.31
UPF3A-202ENST00000375299 LINC00472Q9H8W2 130 aa13.13□□□□□ -0.31
UPF3A-202ENST00000375299 NBEAL1Q6ZS30 2694 aa13.11□□□□□ -0.31
UPF3A-202ENST00000375299 DNAH10Q8IVF4 4471 aa13.11□□□□□ -0.31
UPF3A-202ENST00000375299 K7EIL1 84 aa13.09□□□□□ -0.31
UPF3A-202ENST00000375299 KRTAP11-1Q8IUC1 163 aa13.09□□□□□ -0.31
UPF3A-202ENST00000375299 PHF5AQ7RTV0 110 aaKnown RBP13.09□□□□□ -0.31
UPF3A-202ENST00000375299 H0Y9J4 135 aa13.08□□□□□ -0.32
UPF3A-202ENST00000375299 Q5VV11 94 aa13.07□□□□□ -0.32
UPF3A-202ENST00000375299 C9orf163Q8N9P6 203 aa13.07□□□□□ -0.32
UPF3A-202ENST00000375299 KRTAP1-5Q9BYS1 174 aa13.07□□□□□ -0.32
UPF3A-202ENST00000375299 Q8N9P0 234 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-202ENST00000375299 COL6A5A8TX70 2615 aa13.04□□□□□ -0.32
UPF3A-202ENST00000375299 CHTF8P0CG12 524 aa13.03□□□□□ -0.32
UPF3A-202ENST00000375299 PMAIP1Q13794 54 aa13.03□□□□□ -0.32
UPF3A-202ENST00000375299 MMP24-AS1A0A0U1RRL7 71 aa13.02□□□□□ -0.32
UPF3A-202ENST00000375299 LIMD2Q9BT23 127 aa13.02□□□□□ -0.32
UPF3A-202ENST00000375299 DNAH9Q9NYC9 4486 aa12.99□□□□□ -0.33
UPF3A-202ENST00000375299 SEC61GP60059 68 aa12.98□□□□□ -0.33
UPF3A-202ENST00000375299 C14orf177Q52M58 125 aa12.96□□□□□ -0.33
UPF3A-202ENST00000375299 A8MU10 97 aa12.95□□□□□ -0.34
UPF3A-202ENST00000375299 PRR15LQ9BU68 103 aa12.95□□□□□ -0.34
UPF3A-202ENST00000375299 IGLV7-46A0A075B6I9 117 aa12.94□□□□□ -0.34
UPF3A-202ENST00000375299 CHKB-CPT1BH3BT56 60 aa12.94□□□□□ -0.34
UPF3A-202ENST00000375299 COA5Q86WW8 74 aa12.93□□□□□ -0.34
UPF3A-202ENST00000375299 LYSTQ99698 3801 aa12.91□□□□□ -0.34
UPF3A-202ENST00000375299 COL7A1Q02388 2944 aa12.91□□□□□ -0.34
UPF3A-202ENST00000375299 SRRM2Q9UQ35 2752 aaKnown RBP12.9□□□□□ -0.34
UPF3A-202ENST00000375299 KRTAP13-1Q8IUC0 172 aa12.88□□□□□ -0.35
UPF3A-202ENST00000375299 UBE2DNLQ8IWF7 75 aa12.88□□□□□ -0.35
UPF3A-202ENST00000375299 Q96NJ1 140 aa12.88□□□□□ -0.35
UPF3A-202ENST00000375299 ASB16-AS1Q495Z4 193 aa12.88□□□□□ -0.35
UPF3A-202ENST00000375299 TP53AIP1Q9HCN2 124 aa12.87□□□□□ -0.35
UPF3A-202ENST00000375299 MOBPQ13875 183 aa12.87□□□□□ -0.35
UPF3A-202ENST00000375299 STAB2Q8WWQ8 2551 aa12.86□□□□□ -0.35
UPF3A-202ENST00000375299 PCOTHQ58A44 107 aa12.86□□□□□ -0.35
UPF3A-202ENST00000375299 Q75L30 129 aa12.86□□□□□ -0.35
UPF3A-202ENST00000375299 MGAM2Q2M2H8 2515 aa12.86□□□□□ -0.35
UPF3A-202ENST00000375299 LOC101927531A0A1B0GV80 90 aa12.85□□□□□ -0.35
UPF3A-202ENST00000375299 APLNQ9ULZ1 77 aa12.84□□□□□ -0.35
UPF3A-202ENST00000375299 CD164Q04900 197 aa12.83□□□□□ -0.36
UPF3A-202ENST00000375299 IGLV9-49A0A0B4J1Y8 123 aa12.82□□□□□ -0.36
UPF3A-202ENST00000375299 C8orf17Q9NRJ1 99 aa12.82□□□□□ -0.36
UPF3A-202ENST00000375299 Q6ZR54 194 aa12.81□□□□□ -0.36
UPF3A-202ENST00000375299 TENM2Q9NT68 2774 aa12.8□□□□□ -0.36
UPF3A-202ENST00000375299 PANO1I0J062 215 aa12.8□□□□□ -0.36
UPF3A-202ENST00000375299 DYNC2H1Q8NCM8 4307 aaKnown RBP12.78□□□□□ -0.36
UPF3A-202ENST00000375299 LCA10Q71F78 164 aa12.77□□□□□ -0.36
UPF3A-202ENST00000375299 A6NED7 52 aa12.77□□□□□ -0.37
UPF3A-202ENST00000375299 A0A1B0GVX0 72 aa12.74□□□□□ -0.37
UPF3A-202ENST00000375299 LINC00483Q53H64 154 aa12.73□□□□□ -0.37
UPF3A-202ENST00000375299 IGHV6-1A0A0B4J1U7 121 aa12.73□□□□□ -0.37
UPF3A-202ENST00000375299 NDUFS5O43920 106 aa12.73□□□□□ -0.37
UPF3A-202ENST00000375299 LINC01558Q9Y6Z2 57 aa12.73□□□□□ -0.37
UPF3A-202ENST00000375299 SPTSSBQ8NFR3 76 aa12.72□□□□□ -0.37
UPF3A-202ENST00000375299 ATP11AUNQ6ZP68 121 aa12.72□□□□□ -0.37
UPF3A-202ENST00000375299 PLAC8Q9NZF1 115 aa12.71□□□□□ -0.38
UPF3A-202ENST00000375299 DNAH7Q8WXX0 4024 aa12.7□□□□□ -0.38
UPF3A-202ENST00000375299 MRPL34Q9BQ48 92 aaKnown RBP12.7□□□□□ -0.38
UPF3A-202ENST00000375299 SPAG11AQ6PDA7 123 aa12.69□□□□□ -0.38
UPF3A-202ENST00000375299 CSMD3Q7Z407 3707 aa12.68□□□□□ -0.38
UPF3A-202ENST00000375299 CDC42SE1Q9NRR8 79 aa12.68□□□□□ -0.38
UPF3A-202ENST00000375299 CDK2AP2O75956 126 aa12.67□□□□□ -0.38
UPF3A-202ENST00000375299 SPACA4Q8TDM5 124 aa12.67□□□□□ -0.38
UPF3A-202ENST00000375299 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-202ENST00000375299 KTN1-AS1Q86SY8 53 aa12.66□□□□□ -0.38
UPF3A-202ENST00000375299 NBDYA0A0U1RRE5 68 aa12.66□□□□□ -0.38
UPF3A-202ENST00000375299 HRES1P13985 223 aa12.66□□□□□ -0.38
UPF3A-202ENST00000375299 PLECQ15149 4684 aaKnown RBP12.65□□□□□ -0.38
UPF3A-202ENST00000375299 Q6ZRN7 208 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-202ENST00000375299 WWC2-AS2Q96NR7 200 aa12.65□□□□□ -0.38
UPF3A-202ENST00000375299 ZNF706Q9Y5V0 76 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-202ENST00000375299 A0A087X002 238 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms