RNA–Protein interactions for RNA: ENST00000373474.8

LMX1B-202, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-202ENST00000373474 CHD9Q3L8U1 2897 aa8.62□□□□□ -1.03
LMX1B-202ENST00000373474 FASNP49327 2511 aaKnown RBP8.6□□□□□ -1.03
LMX1B-202ENST00000373474 H1FX-AS1Q4G0G2 97 aa8.59□□□□□ -1.03
LMX1B-202ENST00000373474 PRRC2CQ9Y520 2896 aaKnown RBP8.58□□□□□ -1.04
LMX1B-202ENST00000373474 HTTP42858 3142 aa8.57□□□□□ -1.04
LMX1B-202ENST00000373474 KRTAP1-5Q9BYS1 174 aa8.56□□□□□ -1.04
LMX1B-202ENST00000373474 R4GN34 69 aa8.56□□□□□ -1.04
LMX1B-202ENST00000373474 PCNTO95613 3336 aa8.53□□□□□ -1.04
LMX1B-202ENST00000373474 KRTAP4-16G5E9R7 235 aaPredicted RBP8.52□□□□□ -1.05
LMX1B-202ENST00000373474 Q6ZR54 194 aa8.5□□□□□ -1.05
LMX1B-202ENST00000373474 SPATA8Q6RVD6 105 aa8.49□□□□□ -1.05
LMX1B-202ENST00000373474 A6NN06 94 aa8.47□□□□□ -1.05
LMX1B-202ENST00000373474 KRTAP25-1Q3LHN0 102 aa8.44□□□□□ -1.06
LMX1B-202ENST00000373474 TRANK1O15050 2925 aa8.44□□□□□ -1.06
LMX1B-202ENST00000373474 KRTAP29-1A8MX34 341 aaPredicted RBP8.43□□□□□ -1.06
LMX1B-202ENST00000373474 M0R2T5 61 aa8.41□□□□□ -1.06
LMX1B-202ENST00000373474 FLNAP21333 2647 aaKnown RBP8.4□□□□□ -1.06
LMX1B-202ENST00000373474 M0QZ58 72 aa8.39□□□□□ -1.07
LMX1B-202ENST00000373474 SEC61BP60468 96 aaKnown RBP8.37□□□□□ -1.07
LMX1B-202ENST00000373474 MKI67P46013 3256 aaKnown RBP8.35□□□□□ -1.07
LMX1B-202ENST00000373474 EPG5Q9HCE0 2579 aa8.35□□□□□ -1.07
LMX1B-202ENST00000373474 PANO1I0J062 215 aa8.34□□□□□ -1.07
LMX1B-202ENST00000373474 KRTAP10-1P60331 282 aa8.34□□□□□ -1.07
LMX1B-202ENST00000373474 ITPR3Q14573 2671 aa8.33□□□□□ -1.08
LMX1B-202ENST00000373474 KRTAP10-2P60368 255 aa8.32□□□□□ -1.08
LMX1B-202ENST00000373474 A0A087X002 238 aa8.31□□□□□ -1.08
LMX1B-202ENST00000373474 PLAC4Q8WY50 150 aa8.31□□□□□ -1.08
LMX1B-202ENST00000373474 A0A0C4DFX4 3053 aa8.3□□□□□ -1.08
LMX1B-202ENST00000373474 HECTD1Q9ULT8 2610 aa8.3□□□□□ -1.08
LMX1B-202ENST00000373474 ADM2Q7Z4H4 148 aa8.27□□□□□ -1.08
LMX1B-202ENST00000373474 LCE6AA0A183 80 aa8.26□□□□□ -1.09
LMX1B-202ENST00000373474 NDUFAF8A1L188 74 aa8.25□□□□□ -1.09
LMX1B-202ENST00000373474 KRTAP11-1Q8IUC1 163 aa8.23□□□□□ -1.09
LMX1B-202ENST00000373474 KRTAP7-1Q8IUC3 87 aa8.23□□□□□ -1.09
LMX1B-202ENST00000373474 CFAP54Q96N23 3096 aa8.21□□□□□ -1.09
LMX1B-202ENST00000373474 NOTCH2NLQ7Z3S9 236 aa8.21□□□□□ -1.09
LMX1B-202ENST00000373474 Q5VSD8 79 aa8.2□□□□□ -1.1
LMX1B-202ENST00000373474 C20orf166-AS1Q96NR2 134 aa8.18□□□□□ -1.1
LMX1B-202ENST00000373474 RANBP2P49792 3224 aaKnown RBP8.17□□□□□ -1.1
LMX1B-202ENST00000373474 ATRQ13535 2644 aa8.16□□□□□ -1.1
LMX1B-202ENST00000373474 MGAQ8IWI9 3026 aa8.16□□□□□ -1.1
LMX1B-202ENST00000373474 BRCA2P51587 3418 aa8.15□□□□□ -1.1
LMX1B-202ENST00000373474 Q6ZRN7 208 aaPredicted RBP8.14□□□□□ -1.11
LMX1B-202ENST00000373474 LAMA3Q16787 3333 aa8.13□□□□□ -1.11
LMX1B-202ENST00000373474 USP24Q9UPU5 2620 aa8.12□□□□□ -1.11
LMX1B-202ENST00000373474 KRTAP13-1Q8IUC0 172 aa8.11□□□□□ -1.11
LMX1B-202ENST00000373474 MGAM2Q2M2H8 2515 aa8.11□□□□□ -1.11
LMX1B-202ENST00000373474 A8MU10 97 aa8.1□□□□□ -1.11
LMX1B-202ENST00000373474 RPS29P62273 56 aaKnown RBP8.1□□□□□ -1.11
LMX1B-202ENST00000373474 AKAP13Q12802 2813 aa8.1□□□□□ -1.11
LMX1B-202ENST00000373474 FLNBO75369 2602 aaKnown RBP8.07□□□□□ -1.12
LMX1B-202ENST00000373474 TRIOO75962 3097 aa8.07□□□□□ -1.12
LMX1B-202ENST00000373474 HELZ2Q9BYK8 2649 aaKnown RBP8.06□□□□□ -1.12
LMX1B-202ENST00000373474 LAMA2P24043 3122 aaKnown RBP8.06□□□□□ -1.12
LMX1B-202ENST00000373474 ZNF292O60281 2723 aa8.05□□□□□ -1.12
LMX1B-202ENST00000373474 CFAP46Q8IYW2 2715 aa8.05□□□□□ -1.12
LMX1B-202ENST00000373474 A8MUU9 505 aa8□□□□□ -1.13
LMX1B-202ENST00000373474 KRTAP13-2Q52LG2 175 aa8□□□□□ -1.13
LMX1B-202ENST00000373474 UNC80Q8N2C7 3258 aa7.98□□□□□ -1.13
LMX1B-202ENST00000373474 CDH23Q9H251 3354 aa7.98□□□□□ -1.13
LMX1B-202ENST00000373474 MAST4O15021 2626 aa7.98□□□□□ -1.13
LMX1B-202ENST00000373474 TNRC18O15417 2968 aaPredicted RBP7.97□□□□□ -1.13
LMX1B-202ENST00000373474 CHD6Q8TD26 2715 aa7.96□□□□□ -1.13
LMX1B-202ENST00000373474 WDFY4Q6ZS81 3184 aa7.94□□□□□ -1.14
LMX1B-202ENST00000373474 GCN1Q92616 2671 aaKnown RBP7.93□□□□□ -1.14
LMX1B-202ENST00000373474 FLG2Q5D862 2391 aaPredicted RBP7.92□□□□□ -1.14
LMX1B-202ENST00000373474 TNP1P09430 55 aa7.91□□□□□ -1.14
LMX1B-202ENST00000373474 C10orf95Q9H7T3 257 aa7.91□□□□□ -1.14
LMX1B-202ENST00000373474 PRUNE2Q8WUY3 3088 aa7.9□□□□□ -1.15
LMX1B-202ENST00000373474 DNAH14Q0VDD8 3507 aa7.89□□□□□ -1.15
LMX1B-202ENST00000373474 FRYQ5TBA9 3013 aa7.89□□□□□ -1.15
LMX1B-202ENST00000373474 PP632Q6XCG6 107 aa7.89□□□□□ -1.15
LMX1B-202ENST00000373474 CENPEQ02224 2701 aa7.86□□□□□ -1.15
LMX1B-202ENST00000373474 XIRP2A4UGR9 3374 aa7.85□□□□□ -1.15
LMX1B-202ENST00000373474 VPS13AQ96RL7 3174 aa7.84□□□□□ -1.15
LMX1B-202ENST00000373474 UNC79Q9P2D8 2635 aa7.83□□□□□ -1.16
LMX1B-202ENST00000373474 CELSR3Q9NYQ7 3312 aa7.82□□□□□ -1.16
LMX1B-202ENST00000373474 TEX15Q9BXT5 2789 aa7.81□□□□□ -1.16
LMX1B-202ENST00000373474 NBEAL2Q6ZNJ1 2754 aa7.8□□□□□ -1.16
LMX1B-202ENST00000373474 IGSF10Q6WRI0 2623 aa7.79□□□□□ -1.16
LMX1B-202ENST00000373474 SETXQ7Z333 2677 aaKnown RBP7.78□□□□□ -1.16
LMX1B-202ENST00000373474 SZT2Q5T011 3432 aa7.78□□□□□ -1.16
LMX1B-202ENST00000373474 TEP1Q99973 2627 aaKnown RBP7.78□□□□□ -1.16
LMX1B-202ENST00000373474 DMBT1Q9UGM3 2413 aaPredicted RBP7.77□□□□□ -1.17
LMX1B-202ENST00000373474 LAMA1P25391 3075 aa7.76□□□□□ -1.17
LMX1B-202ENST00000373474 DSPP15924 2871 aaKnown RBP7.76□□□□□ -1.17
LMX1B-202ENST00000373474 NBEAL1Q6ZS30 2694 aa7.75□□□□□ -1.17
LMX1B-202ENST00000373474 VCANP13611 3396 aa7.74□□□□□ -1.17
LMX1B-202ENST00000373474 KALRNO60229 2985 aa7.72□□□□□ -1.17
LMX1B-202ENST00000373474 COL6A3P12111 3177 aa7.71□□□□□ -1.18
LMX1B-202ENST00000373474 P0C880 135 aa7.7□□□□□ -1.18
LMX1B-202ENST00000373474 LRBAP50851 2863 aa7.68□□□□□ -1.18
LMX1B-202ENST00000373474 KMT2BQ9UMN6 2715 aaPredicted RBP7.67□□□□□ -1.18
LMX1B-202ENST00000373474 KRTAP1-4P0C5Y4 121 aa7.63□□□□□ -1.19
LMX1B-202ENST00000373474 SPTBN5Q9NRC6 3674 aaKnown RBP7.63□□□□□ -1.19
LMX1B-202ENST00000373474 ITPR2Q14571 2701 aa7.6□□□□□ -1.19
LMX1B-202ENST00000373474 H0YAA0 97 aa7.59□□□□□ -1.2
LMX1B-202ENST00000373474 COL6A5A8TX70 2615 aa7.58□□□□□ -1.2
LMX1B-202ENST00000373474 NBEAQ8NFP9 2946 aa7.57□□□□□ -1.2
LMX1B-202ENST00000373474 NOTCH1P46531 2555 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms