RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DNAH14Q0VDD8 3507 aa7.38□□□□□ -1.23
PTPRF-203ENST00000372407 OBSCN-AS1Q96MR7 158 aa7.38□□□□□ -1.23
PTPRF-203ENST00000372407 KALRNO60229 2985 aa7.36□□□□□ -1.23
PTPRF-203ENST00000372407 CNBPP62633 177 aaKnown RBP7.36□□□□□ -1.23
PTPRF-203ENST00000372407 ITPR2Q14571 2701 aa7.35□□□□□ -1.23
PTPRF-203ENST00000372407 CASC10Q5T4H9 136 aa7.35□□□□□ -1.23
PTPRF-203ENST00000372407 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
PTPRF-203ENST00000372407 LINC00304Q8N9R0 145 aa7.34□□□□□ -1.23
PTPRF-203ENST00000372407 SPANXA2-OT1Q8N9U9 137 aa7.34□□□□□ -1.23
PTPRF-203ENST00000372407 SPRR4Q96PI1 79 aa7.34□□□□□ -1.23
PTPRF-203ENST00000372407 ANAPC11Q9NYG5 84 aa7.34□□□□□ -1.24
PTPRF-203ENST00000372407 PSORS1C2Q9UIG4 136 aa7.33□□□□□ -1.24
PTPRF-203ENST00000372407 IGLV5-37A0A075B6J1 123 aa7.32□□□□□ -1.24
PTPRF-203ENST00000372407 IGLV7-43P04211 117 aa7.32□□□□□ -1.24
PTPRF-203ENST00000372407 SPINT4Q6UDR6 99 aa7.31□□□□□ -1.24
PTPRF-203ENST00000372407 ITPR1Q14643 2758 aa7.3□□□□□ -1.24
PTPRF-203ENST00000372407 OCR1Q9BZK8 76 aa7.3□□□□□ -1.24
PTPRF-203ENST00000372407 FAM104AQ969W3 186 aa7.29□□□□□ -1.24
PTPRF-203ENST00000372407 NBEAQ8NFP9 2946 aa7.29□□□□□ -1.24
PTPRF-203ENST00000372407 APLNQ9ULZ1 77 aa7.28□□□□□ -1.24
PTPRF-203ENST00000372407 UBR5O95071 2799 aaPredicted RBP7.26□□□□□ -1.25
PTPRF-203ENST00000372407 MUC3AQ02505 3323 aa7.26□□□□□ -1.25
PTPRF-203ENST00000372407 CD164Q04900 197 aa7.26□□□□□ -1.25
PTPRF-203ENST00000372407 HIVEP1P15822 2718 aa7.26□□□□□ -1.25
PTPRF-203ENST00000372407 USP34Q70CQ2 3546 aa7.26□□□□□ -1.25
PTPRF-203ENST00000372407 CRIPTQ9P021 101 aa7.25□□□□□ -1.25
PTPRF-203ENST00000372407 ZZEF1O43149 2961 aa7.25□□□□□ -1.25
PTPRF-203ENST00000372407 C9orf92A6NGG3 77 aa7.24□□□□□ -1.25
PTPRF-203ENST00000372407 KTN1-AS1Q86SY8 53 aa7.24□□□□□ -1.25
PTPRF-203ENST00000372407 SPEGQ15772 3267 aa7.23□□□□□ -1.25
PTPRF-203ENST00000372407 WIPF1O43516 503 aa7.23□□□□□ -1.25
PTPRF-203ENST00000372407 SMR3BP02814 79 aaPredicted RBP7.23□□□□□ -1.25
PTPRF-203ENST00000372407 ADGRG4Q8IZF6 3080 aa7.22□□□□□ -1.25
PTPRF-203ENST00000372407 PRR26Q8N8Z3 221 aa7.22□□□□□ -1.25
PTPRF-203ENST00000372407 MYO15AQ9UKN7 3530 aa7.21□□□□□ -1.26
PTPRF-203ENST00000372407 LCA10Q71F78 164 aa7.21□□□□□ -1.26
PTPRF-203ENST00000372407 APCP25054 2843 aa7.21□□□□□ -1.26
PTPRF-203ENST00000372407 CDC42SE1Q9NRR8 79 aa7.21□□□□□ -1.26
PTPRF-203ENST00000372407 UTP20O75691 2785 aaKnown RBP7.21□□□□□ -1.26
PTPRF-203ENST00000372407 KMT2BQ9UMN6 2715 aaPredicted RBP7.19□□□□□ -1.26
PTPRF-203ENST00000372407 J3QL48 77 aa7.19□□□□□ -1.26
PTPRF-203ENST00000372407 COX6B2Q6YFQ2 88 aa7.18□□□□□ -1.26
PTPRF-203ENST00000372407 Q1T7F1 81 aa7.18□□□□□ -1.26
PTPRF-203ENST00000372407 Q8N1X5 172 aa7.18□□□□□ -1.26
PTPRF-203ENST00000372407 CFAP47Q6ZTR5 3102 aa7.18□□□□□ -1.26
PTPRF-203ENST00000372407 TACC2O95359 2948 aa7.17□□□□□ -1.26
PTPRF-203ENST00000372407 LOC400499M0QZD8 3231 aa7.16□□□□□ -1.26
PTPRF-203ENST00000372407 IGLV7-46A0A075B6I9 117 aa7.16□□□□□ -1.26
PTPRF-203ENST00000372407 NSD1Q96L73 2696 aaPredicted RBP7.15□□□□□ -1.27
PTPRF-203ENST00000372407 STAB2Q8WWQ8 2551 aa7.14□□□□□ -1.27
PTPRF-203ENST00000372407 SPRR1AP35321 89 aa7.13□□□□□ -1.27
PTPRF-203ENST00000372407 Q8NDZ9 215 aa7.13□□□□□ -1.27
PTPRF-203ENST00000372407 NBEAL2Q6ZNJ1 2754 aa7.12□□□□□ -1.27
PTPRF-203ENST00000372407 RBM12B-AS1Q9P1G2 102 aa7.12□□□□□ -1.27
PTPRF-203ENST00000372407 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
PTPRF-203ENST00000372407 TNP2Q05952 138 aa7.12□□□□□ -1.27
PTPRF-203ENST00000372407 KRTAP21-3Q3LHN1 58 aa7.11□□□□□ -1.27
PTPRF-203ENST00000372407 DMBT1Q9UGM3 2413 aaPredicted RBP7.1□□□□□ -1.27
PTPRF-203ENST00000372407 A0A0D9SG42 100 aa7.09□□□□□ -1.27
PTPRF-203ENST00000372407 HRES1P13985 223 aa7.09□□□□□ -1.27
PTPRF-203ENST00000372407 MMP24-AS1A0A0U1RRL7 71 aa7.08□□□□□ -1.28
PTPRF-203ENST00000372407 DCHS1Q96JQ0 3298 aa7.08□□□□□ -1.28
PTPRF-203ENST00000372407 LRBAP50851 2863 aa7.07□□□□□ -1.28
PTPRF-203ENST00000372407 LINC01554Q52M75 96 aa7.07□□□□□ -1.28
PTPRF-203ENST00000372407 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
PTPRF-203ENST00000372407 CYSTM1Q9H1C7 97 aa7.06□□□□□ -1.28
PTPRF-203ENST00000372407 FAM229BQ4G0N7 80 aa7.05□□□□□ -1.28
PTPRF-203ENST00000372407 Q75L30 129 aa7.05□□□□□ -1.28
PTPRF-203ENST00000372407 SPRR1BP22528 89 aa7.05□□□□□ -1.28
PTPRF-203ENST00000372407 FP248Q71RG6 208 aaPredicted RBP7.04□□□□□ -1.28
PTPRF-203ENST00000372407 LINC01558Q9Y6Z2 57 aa7.04□□□□□ -1.28
PTPRF-203ENST00000372407 ASH1LQ9NR48 2969 aaKnown RBP7.04□□□□□ -1.28
PTPRF-203ENST00000372407 A0A1B0GU33 70 aa7.03□□□□□ -1.28
PTPRF-203ENST00000372407 Q5XG85 94 aa7.03□□□□□ -1.28
PTPRF-203ENST00000372407 LINC00472Q9H8W2 130 aa7.03□□□□□ -1.28
PTPRF-203ENST00000372407 PLAC8Q9NZF1 115 aa7.02□□□□□ -1.29
PTPRF-203ENST00000372407 CELSR2Q9HCU4 2923 aa7.02□□□□□ -1.29
PTPRF-203ENST00000372407 TENM4Q6N022 2769 aa7.01□□□□□ -1.29
PTPRF-203ENST00000372407 CRYBG3Q68DQ2 2970 aa7□□□□□ -1.29
PTPRF-203ENST00000372407 ZANQ9Y493 2812 aa6.98□□□□□ -1.29
PTPRF-203ENST00000372407 Q6ZSA8 131 aa6.97□□□□□ -1.29
PTPRF-203ENST00000372407 ZCCHC13Q8WW36 166 aaKnown RBP6.97□□□□□ -1.29
PTPRF-203ENST00000372407 KRTAP26-1Q6PEX3 210 aa6.96□□□□□ -1.29
PTPRF-203ENST00000372407 NIPBLQ6KC79 2804 aaeCLIP6.95□□□□□ -1.3
PTPRF-203ENST00000372407 DMDP11532 3685 aa6.94□□□□□ -1.3
PTPRF-203ENST00000372407 Q5W150 140 aa6.94□□□□□ -1.3
PTPRF-203ENST00000372407 Q5VV11 94 aa6.93□□□□□ -1.3
PTPRF-203ENST00000372407 KRTAP1-5Q9BYS1 174 aa6.93□□□□□ -1.3
PTPRF-203ENST00000372407 LUZP6Q538Z0 58 aa6.92□□□□□ -1.3
PTPRF-203ENST00000372407 HRNRQ86YZ3 2850 aaPredicted RBP6.91□□□□□ -1.3
PTPRF-203ENST00000372407 LCE6AA0A183 80 aa6.89□□□□□ -1.31
PTPRF-203ENST00000372407 CAMK2N1Q7Z7J9 78 aa6.89□□□□□ -1.31
PTPRF-203ENST00000372407 LAMA5O15230 3695 aa6.89□□□□□ -1.31
PTPRF-203ENST00000372407 DMAC1Q96GE9 116 aa6.88□□□□□ -1.31
PTPRF-203ENST00000372407 OXTP01178 125 aa6.87□□□□□ -1.31
PTPRF-203ENST00000372407 SPINK7P58062 85 aa6.87□□□□□ -1.31
PTPRF-203ENST00000372407 CSAG1Q6PB30 78 aa6.87□□□□□ -1.31
PTPRF-203ENST00000372407 RELNP78509 3460 aa6.87□□□□□ -1.31
PTPRF-203ENST00000372407 PRAC1Q96KF2 57 aa6.86□□□□□ -1.31
PTPRF-203ENST00000372407 KRTAP4-16G5E9R7 235 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms