RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 Q5VSD8 79 aa7.3□□□□□ -1.24
SYNE1-204ENST00000367248 LCE6AA0A183 80 aa7.3□□□□□ -1.24
SYNE1-204ENST00000367248 FREM2Q5SZK8 3169 aa7.3□□□□□ -1.24
SYNE1-204ENST00000367248 IGLV5-48A0A075B6I7 105 aa7.29□□□□□ -1.24
SYNE1-204ENST00000367248 PMAIP1Q13794 54 aa7.28□□□□□ -1.24
SYNE1-204ENST00000367248 TACC2O95359 2948 aa7.28□□□□□ -1.24
SYNE1-204ENST00000367248 CRYBG3Q68DQ2 2970 aa7.27□□□□□ -1.25
SYNE1-204ENST00000367248 Q8N1X5 172 aa7.26□□□□□ -1.25
SYNE1-204ENST00000367248 FRYLO94915 3013 aa7.26□□□□□ -1.25
SYNE1-204ENST00000367248 KRTAP1-5Q9BYS1 174 aa7.24□□□□□ -1.25
SYNE1-204ENST00000367248 LAMA1P25391 3075 aa7.24□□□□□ -1.25
SYNE1-204ENST00000367248 PLAC8Q9NZF1 115 aa7.23□□□□□ -1.25
SYNE1-204ENST00000367248 KRTAP10-2P60368 255 aa7.22□□□□□ -1.25
SYNE1-204ENST00000367248 C1orf195Q5TG92 126 aa7.21□□□□□ -1.25
SYNE1-204ENST00000367248 ITPR1Q14643 2758 aa7.21□□□□□ -1.26
SYNE1-204ENST00000367248 COL12A1Q99715 3063 aa7.21□□□□□ -1.26
SYNE1-204ENST00000367248 STAB2Q8WWQ8 2551 aa7.2□□□□□ -1.26
SYNE1-204ENST00000367248 CD164Q04900 197 aa7.2□□□□□ -1.26
SYNE1-204ENST00000367248 ATMQ13315 3056 aa7.2□□□□□ -1.26
SYNE1-204ENST00000367248 KRTAP10-1P60331 282 aa7.19□□□□□ -1.26
SYNE1-204ENST00000367248 DMXL2Q8TDJ6 3036 aa7.19□□□□□ -1.26
SYNE1-204ENST00000367248 LINC01600Q96MT4 127 aa7.19□□□□□ -1.26
SYNE1-204ENST00000367248 A0A0D9SG42 100 aa7.19□□□□□ -1.26
SYNE1-204ENST00000367248 DNAH14Q0VDD8 3507 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 RPS28P62857 69 aaKnown RBP7.18□□□□□ -1.26
SYNE1-204ENST00000367248 NBEAL2Q6ZNJ1 2754 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 BOD1L1Q8NFC6 3051 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 SPRR1AP35321 89 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 FAM229BQ4G0N7 80 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 Q8NDZ9 215 aa7.18□□□□□ -1.26
SYNE1-204ENST00000367248 ITPR2Q14571 2701 aa7.17□□□□□ -1.26
SYNE1-204ENST00000367248 KLKP1Q107X0 134 aa7.17□□□□□ -1.26
SYNE1-204ENST00000367248 KRTAP26-1Q6PEX3 210 aa7.16□□□□□ -1.26
SYNE1-204ENST00000367248 COA5Q86WW8 74 aa7.16□□□□□ -1.26
SYNE1-204ENST00000367248 DMBT1Q9UGM3 2413 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-204ENST00000367248 SPINT4Q6UDR6 99 aa7.15□□□□□ -1.27
SYNE1-204ENST00000367248 CFAP47Q6ZTR5 3102 aa7.14□□□□□ -1.27
SYNE1-204ENST00000367248 FLG2Q5D862 2391 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-204ENST00000367248 HIVEP1P15822 2718 aa7.1□□□□□ -1.27
SYNE1-204ENST00000367248 SPRR1BP22528 89 aa7.1□□□□□ -1.27
SYNE1-204ENST00000367248 EYSQ5T1H1 3165 aa7.1□□□□□ -1.27
SYNE1-204ENST00000367248 C4orf26Q17RF5 130 aa7.08□□□□□ -1.28
SYNE1-204ENST00000367248 TENM4Q6N022 2769 aa7.08□□□□□ -1.28
SYNE1-204ENST00000367248 Q6ZR54 194 aa7.07□□□□□ -1.28
SYNE1-204ENST00000367248 SPEGQ15772 3267 aa7.06□□□□□ -1.28
SYNE1-204ENST00000367248 H7BZZ5 65 aa7.06□□□□□ -1.28
SYNE1-204ENST00000367248 A8MUN3 132 aa7.06□□□□□ -1.28
SYNE1-204ENST00000367248 PRO0628Q9UI54 55 aa7.05□□□□□ -1.28
SYNE1-204ENST00000367248 UQCR11O14957 56 aa7.04□□□□□ -1.28
SYNE1-204ENST00000367248 KALRNO60229 2985 aa7.01□□□□□ -1.29
SYNE1-204ENST00000367248 OCR1Q9BZK8 76 aa7.01□□□□□ -1.29
SYNE1-204ENST00000367248 CYP4F30PQ9H0H9 118 aa7.01□□□□□ -1.29
SYNE1-204ENST00000367248 CAMK2N1Q7Z7J9 78 aa7□□□□□ -1.29
SYNE1-204ENST00000367248 SPANXA2-OT1Q8N9U9 137 aa7□□□□□ -1.29
SYNE1-204ENST00000367248 SEC61BP60468 96 aaKnown RBP7□□□□□ -1.29
SYNE1-204ENST00000367248 TNRC18O15417 2968 aaPredicted RBP7□□□□□ -1.29
SYNE1-204ENST00000367248 PANO1I0J062 215 aa6.99□□□□□ -1.29
SYNE1-204ENST00000367248 MMP24-AS1A0A0U1RRL7 71 aa6.99□□□□□ -1.29
SYNE1-204ENST00000367248 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-204ENST00000367248 ADGRG4Q8IZF6 3080 aa6.98□□□□□ -1.29
SYNE1-204ENST00000367248 NIPBLQ6KC79 2804 aaeCLIP6.97□□□□□ -1.29
SYNE1-204ENST00000367248 UTP20O75691 2785 aaKnown RBP6.97□□□□□ -1.29
SYNE1-204ENST00000367248 ZZEF1O43149 2961 aa6.97□□□□□ -1.29
SYNE1-204ENST00000367248 SPTBN5Q9NRC6 3674 aaKnown RBP6.97□□□□□ -1.29
SYNE1-204ENST00000367248 LRBAP50851 2863 aa6.97□□□□□ -1.29
SYNE1-204ENST00000367248 LINC00472Q9H8W2 130 aa6.96□□□□□ -1.3
SYNE1-204ENST00000367248 CRIPTQ9P021 101 aa6.95□□□□□ -1.3
SYNE1-204ENST00000367248 KRTAP21-3Q3LHN1 58 aa6.95□□□□□ -1.3
SYNE1-204ENST00000367248 NBEAQ8NFP9 2946 aa6.95□□□□□ -1.3
SYNE1-204ENST00000367248 ASH1LQ9NR48 2969 aaKnown RBP6.94□□□□□ -1.3
SYNE1-204ENST00000367248 MIR22HGQ0VDD5 57 aa6.94□□□□□ -1.3
SYNE1-204ENST00000367248 ZCCHC13Q8WW36 166 aaKnown RBP6.94□□□□□ -1.3
SYNE1-204ENST00000367248 HRES1P13985 223 aa6.92□□□□□ -1.3
SYNE1-204ENST00000367248 DMXL1Q9Y485 3027 aa6.92□□□□□ -1.3
SYNE1-204ENST00000367248 USP34Q70CQ2 3546 aa6.91□□□□□ -1.3
SYNE1-204ENST00000367248 KRTAP4-16G5E9R7 235 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-204ENST00000367248 CSAG1Q6PB30 78 aa6.9□□□□□ -1.3
SYNE1-204ENST00000367248 Q6ZRN7 208 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-204ENST00000367248 APCP25054 2843 aa6.9□□□□□ -1.3
SYNE1-204ENST00000367248 SPINK7P58062 85 aa6.9□□□□□ -1.31
SYNE1-204ENST00000367248 S4R3F8 94 aa6.9□□□□□ -1.31
SYNE1-204ENST00000367248 LINC00483Q53H64 154 aa6.89□□□□□ -1.31
SYNE1-204ENST00000367248 Q8N9P0 234 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-204ENST00000367248 A0A087X002 238 aa6.85□□□□□ -1.31
SYNE1-204ENST00000367248 OXTP01178 125 aa6.85□□□□□ -1.31
SYNE1-204ENST00000367248 CELSR2Q9HCU4 2923 aa6.84□□□□□ -1.31
SYNE1-204ENST00000367248 Q5W150 140 aa6.84□□□□□ -1.32
SYNE1-204ENST00000367248 R4GN34 69 aa6.81□□□□□ -1.32
SYNE1-204ENST00000367248 FP248Q71RG6 208 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-204ENST00000367248 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
SYNE1-204ENST00000367248 KRTAP11-1Q8IUC1 163 aa6.77□□□□□ -1.33
SYNE1-204ENST00000367248 KRTAP7-1Q8IUC3 87 aa6.75□□□□□ -1.33
SYNE1-204ENST00000367248 DCHS2Q6V1P9 2916 aa6.75□□□□□ -1.33
SYNE1-204ENST00000367248 A0A1B0GU33 70 aa6.75□□□□□ -1.33
SYNE1-204ENST00000367248 ZANQ9Y493 2812 aa6.75□□□□□ -1.33
SYNE1-204ENST00000367248 MYO15AQ9UKN7 3530 aa6.74□□□□□ -1.33
SYNE1-204ENST00000367248 LOC400499M0QZD8 3231 aa6.71□□□□□ -1.34
SYNE1-204ENST00000367248 Q1T7F1 81 aa6.7□□□□□ -1.34
SYNE1-204ENST00000367248 LCA10Q71F78 164 aa6.69□□□□□ -1.34
SYNE1-204ENST00000367248 M0QZ58 72 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms