RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 HECTD1Q9ULT8 2610 aa9.22□□□□□ -0.93
NUCKS1-201ENST00000367142 Q5XG85 94 aa9.2□□□□□ -0.94
NUCKS1-201ENST00000367142 EPG5Q9HCE0 2579 aa9.17□□□□□ -0.94
NUCKS1-201ENST00000367142 PANO1I0J062 215 aa9.17□□□□□ -0.94
NUCKS1-201ENST00000367142 SPATA8Q6RVD6 105 aa9.16□□□□□ -0.94
NUCKS1-201ENST00000367142 H3BS24 57 aa9.11□□□□□ -0.95
NUCKS1-201ENST00000367142 A0A087X002 238 aa9.11□□□□□ -0.95
NUCKS1-201ENST00000367142 RPS29P62273 56 aaKnown RBP9.1□□□□□ -0.95
NUCKS1-201ENST00000367142 CYSTM1Q9H1C7 97 aa9.1□□□□□ -0.95
NUCKS1-201ENST00000367142 USP24Q9UPU5 2620 aa9.1□□□□□ -0.95
NUCKS1-201ENST00000367142 FLNBO75369 2602 aaKnown RBP9.07□□□□□ -0.96
NUCKS1-201ENST00000367142 KRTAP4-16G5E9R7 235 aaPredicted RBP9.05□□□□□ -0.96
NUCKS1-201ENST00000367142 SRCAPQ6ZRS2 3230 aa9.04□□□□□ -0.96
NUCKS1-201ENST00000367142 ASB16-AS1Q495Z4 193 aa9.03□□□□□ -0.96
NUCKS1-201ENST00000367142 A8MUU9 505 aa9.03□□□□□ -0.96
NUCKS1-201ENST00000367142 KRTAP29-1A8MX34 341 aaPredicted RBP9.01□□□□□ -0.97
NUCKS1-201ENST00000367142 EP400Q96L91 3159 aa9□□□□□ -0.97
NUCKS1-201ENST00000367142 C20orf166-AS1Q96NR2 134 aa8.97□□□□□ -0.97
NUCKS1-201ENST00000367142 CENPFP49454 3210 aa8.96□□□□□ -0.97
NUCKS1-201ENST00000367142 GOLGB1Q14789 3259 aaKnown RBP8.95□□□□□ -0.98
NUCKS1-201ENST00000367142 FLNAP21333 2647 aaKnown RBP8.95□□□□□ -0.98
NUCKS1-201ENST00000367142 NOTCH2NLQ7Z3S9 236 aa8.91□□□□□ -0.98
NUCKS1-201ENST00000367142 ITPR3Q14573 2671 aa8.88□□□□□ -0.99
NUCKS1-201ENST00000367142 Q6ZRN7 208 aaPredicted RBP8.87□□□□□ -0.99
NUCKS1-201ENST00000367142 HELZ2Q9BYK8 2649 aaKnown RBP8.83□□□□□ -1
NUCKS1-201ENST00000367142 A8MU10 97 aa8.83□□□□□ -1
NUCKS1-201ENST00000367142 TNP1P09430 55 aa8.82□□□□□ -1
NUCKS1-201ENST00000367142 MAST4O15021 2626 aa8.82□□□□□ -1
NUCKS1-201ENST00000367142 ATRQ13535 2644 aa8.82□□□□□ -1
NUCKS1-201ENST00000367142 KRTAP11-1Q8IUC1 163 aa8.81□□□□□ -1
NUCKS1-201ENST00000367142 KRTAP13-2Q52LG2 175 aa8.8□□□□□ -1
NUCKS1-201ENST00000367142 KRTAP25-1Q3LHN0 102 aa8.8□□□□□ -1
NUCKS1-201ENST00000367142 KRTAP16-1A8MUX0 517 aa8.77□□□□□ -1.01
NUCKS1-201ENST00000367142 BPTFQ12830 3046 aa8.75□□□□□ -1.01
NUCKS1-201ENST00000367142 STAB1Q9NY15 2570 aa8.73□□□□□ -1.01
NUCKS1-201ENST00000367142 KRTAP21-3Q3LHN1 58 aa8.73□□□□□ -1.01
NUCKS1-201ENST00000367142 FLG2Q5D862 2391 aaPredicted RBP8.72□□□□□ -1.01
NUCKS1-201ENST00000367142 KRTAP13-1Q8IUC0 172 aa8.69□□□□□ -1.02
NUCKS1-201ENST00000367142 PCNTO95613 3336 aa8.67□□□□□ -1.02
NUCKS1-201ENST00000367142 KRTAP7-1Q8IUC3 87 aa8.66□□□□□ -1.02
NUCKS1-201ENST00000367142 C10orf95Q9H7T3 257 aa8.64□□□□□ -1.03
NUCKS1-201ENST00000367142 A6NN06 94 aa8.61□□□□□ -1.03
NUCKS1-201ENST00000367142 DMBT1Q9UGM3 2413 aaPredicted RBP8.56□□□□□ -1.04
NUCKS1-201ENST00000367142 KRTAP10-8P60410 259 aa8.56□□□□□ -1.04
NUCKS1-201ENST00000367142 CFAP46Q8IYW2 2715 aa8.56□□□□□ -1.04
NUCKS1-201ENST00000367142 UTRNP46939 3433 aa8.55□□□□□ -1.04
NUCKS1-201ENST00000367142 NBEAL1Q6ZS30 2694 aa8.53□□□□□ -1.04
NUCKS1-201ENST00000367142 NDUFAF8A1L188 74 aa8.52□□□□□ -1.04
NUCKS1-201ENST00000367142 PP632Q6XCG6 107 aa8.51□□□□□ -1.05
NUCKS1-201ENST00000367142 A0A1B0GVY2 172 aa8.48□□□□□ -1.05
NUCKS1-201ENST00000367142 XP32Q5T750 250 aa8.46□□□□□ -1.06
NUCKS1-201ENST00000367142 PRO2289Q9P1D8 64 aa8.4□□□□□ -1.07
NUCKS1-201ENST00000367142 TEX15Q9BXT5 2789 aa8.37□□□□□ -1.07
NUCKS1-201ENST00000367142 KRTAP10-10P60014 251 aa8.37□□□□□ -1.07
NUCKS1-201ENST00000367142 DNAH12Q6ZR08 3092 aa8.37□□□□□ -1.07
NUCKS1-201ENST00000367142 TEP1Q99973 2627 aaKnown RBP8.36□□□□□ -1.07
NUCKS1-201ENST00000367142 TPRXLQ17RH7 258 aa8.35□□□□□ -1.07
NUCKS1-201ENST00000367142 PRRC2CQ9Y520 2896 aaKnown RBP8.34□□□□□ -1.07
NUCKS1-201ENST00000367142 CEP350Q5VT06 3117 aa8.32□□□□□ -1.08
NUCKS1-201ENST00000367142 KRTAP1-4P0C5Y4 121 aa8.3□□□□□ -1.08
NUCKS1-201ENST00000367142 COL6A5A8TX70 2615 aa8.28□□□□□ -1.08
NUCKS1-201ENST00000367142 SETXQ7Z333 2677 aaKnown RBP8.27□□□□□ -1.09
NUCKS1-201ENST00000367142 STAB2Q8WWQ8 2551 aa8.27□□□□□ -1.09
NUCKS1-201ENST00000367142 CHD6Q8TD26 2715 aa8.27□□□□□ -1.09
NUCKS1-201ENST00000367142 UNC79Q9P2D8 2635 aa8.26□□□□□ -1.09
NUCKS1-201ENST00000367142 CENPEQ02224 2701 aa8.21□□□□□ -1.09
NUCKS1-201ENST00000367142 BAHCC1Q9P281 2608 aa8.21□□□□□ -1.1
NUCKS1-201ENST00000367142 AKAP13Q12802 2813 aa8.2□□□□□ -1.1
NUCKS1-201ENST00000367142 GCN1Q92616 2671 aaKnown RBP8.17□□□□□ -1.1
NUCKS1-201ENST00000367142 BRCA2P51587 3418 aa8.16□□□□□ -1.1
NUCKS1-201ENST00000367142 P0C880 135 aa8.14□□□□□ -1.11
NUCKS1-201ENST00000367142 KRTAP13-3Q3SY46 172 aa8.11□□□□□ -1.11
NUCKS1-201ENST00000367142 H0YAA0 97 aa8.09□□□□□ -1.11
NUCKS1-201ENST00000367142 LAMA3Q16787 3333 aa8.09□□□□□ -1.11
NUCKS1-201ENST00000367142 C5orf42Q9H799 3197 aa8.09□□□□□ -1.11
NUCKS1-201ENST00000367142 NOTCH1P46531 2555 aa8.09□□□□□ -1.12
NUCKS1-201ENST00000367142 NSD1Q96L73 2696 aaPredicted RBP8.05□□□□□ -1.12
NUCKS1-201ENST00000367142 A0A0C4DFX4 3053 aa8.04□□□□□ -1.12
NUCKS1-201ENST00000367142 USP34Q70CQ2 3546 aa8.03□□□□□ -1.12
NUCKS1-201ENST00000367142 LAMA2P24043 3122 aaKnown RBP8□□□□□ -1.13
NUCKS1-201ENST00000367142 MAP1AP78559 2803 aaPredicted RBP7.96□□□□□ -1.13
NUCKS1-201ENST00000367142 ITPR2Q14571 2701 aa7.96□□□□□ -1.13
NUCKS1-201ENST00000367142 KMT2BQ9UMN6 2715 aaPredicted RBP7.96□□□□□ -1.14
NUCKS1-201ENST00000367142 ZNF292O60281 2723 aa7.95□□□□□ -1.14
NUCKS1-201ENST00000367142 NBEAL2Q6ZNJ1 2754 aa7.94□□□□□ -1.14
NUCKS1-201ENST00000367142 XIRP2A4UGR9 3374 aa7.93□□□□□ -1.14
NUCKS1-201ENST00000367142 IGSF10Q6WRI0 2623 aa7.92□□□□□ -1.14
NUCKS1-201ENST00000367142 CHD7Q9P2D1 2997 aa7.91□□□□□ -1.14
NUCKS1-201ENST00000367142 DNAH14Q0VDD8 3507 aa7.87□□□□□ -1.15
NUCKS1-201ENST00000367142 HTTP42858 3142 aa7.86□□□□□ -1.15
NUCKS1-201ENST00000367142 MGAQ8IWI9 3026 aa7.86□□□□□ -1.15
NUCKS1-201ENST00000367142 UBR5O95071 2799 aaPredicted RBP7.84□□□□□ -1.15
NUCKS1-201ENST00000367142 CHD9Q3L8U1 2897 aa7.82□□□□□ -1.16
NUCKS1-201ENST00000367142 MKI67P46013 3256 aaKnown RBP7.82□□□□□ -1.16
NUCKS1-201ENST00000367142 VCANP13611 3396 aa7.79□□□□□ -1.16
NUCKS1-201ENST00000367142 UNC80Q8N2C7 3258 aa7.73□□□□□ -1.17
NUCKS1-201ENST00000367142 CDH23Q9H251 3354 aa7.72□□□□□ -1.17
NUCKS1-201ENST00000367142 KRTAP13-4Q3LI77 160 aa7.7□□□□□ -1.18
NUCKS1-201ENST00000367142 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
NUCKS1-201ENST00000367142 RANBP2P49792 3224 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms