RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 SEC61BP60468 96 aaKnown RBP10.92□□□□□ -0.66
COL18A1-202ENST00000355480 CHD7Q9P2D1 2997 aa10.91□□□□□ -0.66
COL18A1-202ENST00000355480 DMAC1Q96GE9 116 aa10.9□□□□□ -0.66
COL18A1-202ENST00000355480 Q75L30 129 aa10.9□□□□□ -0.66
COL18A1-202ENST00000355480 LINC00472Q9H8W2 130 aa10.9□□□□□ -0.66
COL18A1-202ENST00000355480 LCE6AA0A183 80 aa10.88□□□□□ -0.67
COL18A1-202ENST00000355480 KRTAP10-1P60331 282 aa10.88□□□□□ -0.67
COL18A1-202ENST00000355480 CENPEQ02224 2701 aa10.87□□□□□ -0.67
COL18A1-202ENST00000355480 R4GN34 69 aa10.87□□□□□ -0.67
COL18A1-202ENST00000355480 LINC01558Q9Y6Z2 57 aa10.86□□□□□ -0.67
COL18A1-202ENST00000355480 KRTAP10-2P60368 255 aa10.85□□□□□ -0.67
COL18A1-202ENST00000355480 KRTAP26-1Q6PEX3 210 aa10.81□□□□□ -0.68
COL18A1-202ENST00000355480 AKAP13Q12802 2813 aa10.8□□□□□ -0.68
COL18A1-202ENST00000355480 TEX15Q9BXT5 2789 aa10.77□□□□□ -0.69
COL18A1-202ENST00000355480 TEP1Q99973 2627 aaKnown RBP10.76□□□□□ -0.69
COL18A1-202ENST00000355480 SETXQ7Z333 2677 aaKnown RBP10.76□□□□□ -0.69
COL18A1-202ENST00000355480 CHD6Q8TD26 2715 aa10.74□□□□□ -0.69
COL18A1-202ENST00000355480 FLG2Q5D862 2391 aaPredicted RBP10.74□□□□□ -0.69
COL18A1-202ENST00000355480 NBEAL1Q6ZS30 2694 aa10.72□□□□□ -0.69
COL18A1-202ENST00000355480 CYSTM1Q9H1C7 97 aa10.7□□□□□ -0.7
COL18A1-202ENST00000355480 HTTP42858 3142 aa10.7□□□□□ -0.7
COL18A1-202ENST00000355480 MKI67P46013 3256 aaKnown RBP10.7□□□□□ -0.7
COL18A1-202ENST00000355480 PRAC1Q96KF2 57 aa10.66□□□□□ -0.7
COL18A1-202ENST00000355480 PANO1I0J062 215 aa10.65□□□□□ -0.7
COL18A1-202ENST00000355480 M0QZ58 72 aa10.65□□□□□ -0.7
COL18A1-202ENST00000355480 CHD9Q3L8U1 2897 aa10.65□□□□□ -0.71
COL18A1-202ENST00000355480 Q5VV11 94 aa10.64□□□□□ -0.71
COL18A1-202ENST00000355480 FP248Q71RG6 208 aaPredicted RBP10.64□□□□□ -0.71
COL18A1-202ENST00000355480 COL6A5A8TX70 2615 aa10.62□□□□□ -0.71
COL18A1-202ENST00000355480 RPL37P61927 97 aaKnown RBP10.61□□□□□ -0.71
COL18A1-202ENST00000355480 Q5XG85 94 aa10.61□□□□□ -0.71
COL18A1-202ENST00000355480 Q6ZR54 194 aa10.59□□□□□ -0.71
COL18A1-202ENST00000355480 OXTP01178 125 aa10.58□□□□□ -0.72
COL18A1-202ENST00000355480 UNC79Q9P2D8 2635 aa10.56□□□□□ -0.72
COL18A1-202ENST00000355480 CFAP54Q96N23 3096 aa10.56□□□□□ -0.72
COL18A1-202ENST00000355480 A0A087X002 238 aa10.55□□□□□ -0.72
COL18A1-202ENST00000355480 A0A0C4DFX4 3053 aa10.55□□□□□ -0.72
COL18A1-202ENST00000355480 KRTAP4-16G5E9R7 235 aaPredicted RBP10.54□□□□□ -0.72
COL18A1-202ENST00000355480 H1FX-AS1Q4G0G2 97 aa10.54□□□□□ -0.72
COL18A1-202ENST00000355480 MGAQ8IWI9 3026 aa10.54□□□□□ -0.72
COL18A1-202ENST00000355480 LAMA3Q16787 3333 aa10.53□□□□□ -0.72
COL18A1-202ENST00000355480 ADM2Q7Z4H4 148 aa10.52□□□□□ -0.73
COL18A1-202ENST00000355480 RANBP2P49792 3224 aaKnown RBP10.51□□□□□ -0.73
COL18A1-202ENST00000355480 ROMO1P60602 79 aa10.51□□□□□ -0.73
COL18A1-202ENST00000355480 PLAC4Q8WY50 150 aa10.51□□□□□ -0.73
COL18A1-202ENST00000355480 BRCA2P51587 3418 aa10.51□□□□□ -0.73
COL18A1-202ENST00000355480 GCN1Q92616 2671 aaKnown RBP10.5□□□□□ -0.73
COL18A1-202ENST00000355480 NOTCH1P46531 2555 aa10.49□□□□□ -0.73
COL18A1-202ENST00000355480 DMBT1Q9UGM3 2413 aaPredicted RBP10.45□□□□□ -0.74
COL18A1-202ENST00000355480 A0A0A0MQY5 61 aa10.44□□□□□ -0.74
COL18A1-202ENST00000355480 SPATA8Q6RVD6 105 aa10.43□□□□□ -0.74
COL18A1-202ENST00000355480 ZNF292O60281 2723 aa10.43□□□□□ -0.74
COL18A1-202ENST00000355480 KRTAP29-1A8MX34 341 aaPredicted RBP10.42□□□□□ -0.74
COL18A1-202ENST00000355480 LAMA2P24043 3122 aaKnown RBP10.39□□□□□ -0.75
COL18A1-202ENST00000355480 BAHCC1Q9P281 2608 aa10.38□□□□□ -0.75
COL18A1-202ENST00000355480 NOTCH2NLQ7Z3S9 236 aa10.37□□□□□ -0.75
COL18A1-202ENST00000355480 STAB2Q8WWQ8 2551 aa10.35□□□□□ -0.75
COL18A1-202ENST00000355480 TRANK1O15050 2925 aa10.34□□□□□ -0.75
COL18A1-202ENST00000355480 KRTAP11-1Q8IUC1 163 aa10.34□□□□□ -0.75
COL18A1-202ENST00000355480 UNC80Q8N2C7 3258 aa10.33□□□□□ -0.76
COL18A1-202ENST00000355480 Q6ZRN7 208 aaPredicted RBP10.32□□□□□ -0.76
COL18A1-202ENST00000355480 TRIOO75962 3097 aa10.31□□□□□ -0.76
COL18A1-202ENST00000355480 NBEAL2Q6ZNJ1 2754 aa10.3□□□□□ -0.76
COL18A1-202ENST00000355480 RPS29P62273 56 aaKnown RBP10.29□□□□□ -0.76
COL18A1-202ENST00000355480 ASB16-AS1Q495Z4 193 aa10.28□□□□□ -0.76
COL18A1-202ENST00000355480 UBR5O95071 2799 aaPredicted RBP10.27□□□□□ -0.77
COL18A1-202ENST00000355480 CDH23Q9H251 3354 aa10.26□□□□□ -0.77
COL18A1-202ENST00000355480 WDFY4Q6ZS81 3184 aa10.26□□□□□ -0.77
COL18A1-202ENST00000355480 IGSF10Q6WRI0 2623 aa10.26□□□□□ -0.77
COL18A1-202ENST00000355480 XIRP2A4UGR9 3374 aa10.25□□□□□ -0.77
COL18A1-202ENST00000355480 PRUNE2Q8WUY3 3088 aa10.25□□□□□ -0.77
COL18A1-202ENST00000355480 DSPP15924 2871 aaKnown RBP10.25□□□□□ -0.77
COL18A1-202ENST00000355480 H3BS24 57 aa10.21□□□□□ -0.78
COL18A1-202ENST00000355480 MAP1AP78559 2803 aaPredicted RBP10.19□□□□□ -0.78
COL18A1-202ENST00000355480 A8MUU9 505 aa10.19□□□□□ -0.78
COL18A1-202ENST00000355480 KRTAP13-2Q52LG2 175 aa10.19□□□□□ -0.78
COL18A1-202ENST00000355480 KRTAP7-1Q8IUC3 87 aa10.19□□□□□ -0.78
COL18A1-202ENST00000355480 FRYQ5TBA9 3013 aa10.16□□□□□ -0.78
COL18A1-202ENST00000355480 NSD1Q96L73 2696 aaPredicted RBP10.15□□□□□ -0.78
COL18A1-202ENST00000355480 CELSR3Q9NYQ7 3312 aa10.14□□□□□ -0.79
COL18A1-202ENST00000355480 ITPR2Q14571 2701 aa10.13□□□□□ -0.79
COL18A1-202ENST00000355480 DNAH14Q0VDD8 3507 aa10.13□□□□□ -0.79
COL18A1-202ENST00000355480 C20orf166-AS1Q96NR2 134 aa10.12□□□□□ -0.79
COL18A1-202ENST00000355480 A8MU10 97 aa10.1□□□□□ -0.79
COL18A1-202ENST00000355480 KRTAP13-1Q8IUC0 172 aa10.09□□□□□ -0.79
COL18A1-202ENST00000355480 VPS13AQ96RL7 3174 aa10.03□□□□□ -0.8
COL18A1-202ENST00000355480 ITPR1Q14643 2758 aa10□□□□□ -0.81
COL18A1-202ENST00000355480 KRTAP21-3Q3LHN1 58 aa9.97□□□□□ -0.81
COL18A1-202ENST00000355480 SZT2Q5T011 3432 aa9.97□□□□□ -0.81
COL18A1-202ENST00000355480 FREM2Q5SZK8 3169 aa9.95□□□□□ -0.82
COL18A1-202ENST00000355480 VCANP13611 3396 aa9.94□□□□□ -0.82
COL18A1-202ENST00000355480 KRTAP25-1Q3LHN0 102 aa9.92□□□□□ -0.82
COL18A1-202ENST00000355480 TACC2O95359 2948 aa9.87□□□□□ -0.83
COL18A1-202ENST00000355480 LAMA1P25391 3075 aa9.86□□□□□ -0.83
COL18A1-202ENST00000355480 TNP1P09430 55 aa9.85□□□□□ -0.83
COL18A1-202ENST00000355480 REV3LO60673 3130 aa9.85□□□□□ -0.83
COL18A1-202ENST00000355480 COL6A3P12111 3177 aa9.84□□□□□ -0.83
COL18A1-202ENST00000355480 A6NN06 94 aa9.84□□□□□ -0.83
COL18A1-202ENST00000355480 UTP20O75691 2785 aaKnown RBP9.81□□□□□ -0.84
COL18A1-202ENST00000355480 KMT2BQ9UMN6 2715 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms