RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 C5orf42Q9H799 3197 aa8.45□□□□□ -1.06
COL6A3-202ENST00000347401 SPINK7P58062 85 aa8.44□□□□□ -1.06
COL6A3-202ENST00000347401 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
COL6A3-202ENST00000347401 CFAP54Q96N23 3096 aa8.43□□□□□ -1.06
COL6A3-202ENST00000347401 ITPR1Q14643 2758 aa8.42□□□□□ -1.06
COL6A3-202ENST00000347401 KRTAP16-1A8MUX0 517 aa8.42□□□□□ -1.06
COL6A3-202ENST00000347401 UTP20O75691 2785 aaKnown RBP8.41□□□□□ -1.06
COL6A3-202ENST00000347401 NSD1Q96L73 2696 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-202ENST00000347401 LAMA2P24043 3122 aaKnown RBP8.4□□□□□ -1.07
COL6A3-202ENST00000347401 A0A0C4DFX4 3053 aa8.39□□□□□ -1.07
COL6A3-202ENST00000347401 SPRR1AP35321 89 aa8.36□□□□□ -1.07
COL6A3-202ENST00000347401 A0A1W2PNN7 141 aa8.36□□□□□ -1.07
COL6A3-202ENST00000347401 ROMO1P60602 79 aa8.36□□□□□ -1.07
COL6A3-202ENST00000347401 MMP24-AS1A0A0U1RRL7 71 aa8.35□□□□□ -1.07
COL6A3-202ENST00000347401 A0A096LNT2 108 aa8.34□□□□□ -1.07
COL6A3-202ENST00000347401 Q6ZSA8 131 aa8.34□□□□□ -1.07
COL6A3-202ENST00000347401 SPRR1BP22528 89 aa8.33□□□□□ -1.08
COL6A3-202ENST00000347401 KRTAP24-1Q3LI83 254 aa8.33□□□□□ -1.08
COL6A3-202ENST00000347401 ZCCHC13Q8WW36 166 aaKnown RBP8.33□□□□□ -1.08
COL6A3-202ENST00000347401 S4R3F8 94 aa8.32□□□□□ -1.08
COL6A3-202ENST00000347401 LINC00472Q9H8W2 130 aa8.32□□□□□ -1.08
COL6A3-202ENST00000347401 A0A087X002 238 aa8.32□□□□□ -1.08
COL6A3-202ENST00000347401 NBEAL2Q6ZNJ1 2754 aa8.3□□□□□ -1.08
COL6A3-202ENST00000347401 RPL37P61927 97 aaKnown RBP8.29□□□□□ -1.08
COL6A3-202ENST00000347401 UTRNP46939 3433 aa8.29□□□□□ -1.08
COL6A3-202ENST00000347401 K7EIL1 84 aa8.29□□□□□ -1.08
COL6A3-202ENST00000347401 Q6ZR54 194 aa8.28□□□□□ -1.08
COL6A3-202ENST00000347401 TRANK1O15050 2925 aa8.28□□□□□ -1.08
COL6A3-202ENST00000347401 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
COL6A3-202ENST00000347401 KRTAP10-11P60412 298 aa8.27□□□□□ -1.09
COL6A3-202ENST00000347401 R4GN34 69 aa8.26□□□□□ -1.09
COL6A3-202ENST00000347401 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-202ENST00000347401 A0A0G2JQZ4 141 aa8.24□□□□□ -1.09
COL6A3-202ENST00000347401 Q5W150 140 aa8.24□□□□□ -1.09
COL6A3-202ENST00000347401 H1FX-AS1Q4G0G2 97 aa8.21□□□□□ -1.09
COL6A3-202ENST00000347401 ANAPC11Q9NYG5 84 aa8.21□□□□□ -1.09
COL6A3-202ENST00000347401 M0R2T5 61 aa8.21□□□□□ -1.1
COL6A3-202ENST00000347401 UBR5O95071 2799 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-202ENST00000347401 PLAC8Q9NZF1 115 aa8.2□□□□□ -1.1
COL6A3-202ENST00000347401 CYSTM1Q9H1C7 97 aa8.2□□□□□ -1.1
COL6A3-202ENST00000347401 IGSF10Q6WRI0 2623 aa8.18□□□□□ -1.1
COL6A3-202ENST00000347401 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
COL6A3-202ENST00000347401 DSPP15924 2871 aaKnown RBP8.15□□□□□ -1.11
COL6A3-202ENST00000347401 TRIOO75962 3097 aa8.13□□□□□ -1.11
COL6A3-202ENST00000347401 FRYLO94915 3013 aa8.12□□□□□ -1.11
COL6A3-202ENST00000347401 VPS13AQ96RL7 3174 aa8.11□□□□□ -1.11
COL6A3-202ENST00000347401 MGAQ8IWI9 3026 aa8.11□□□□□ -1.11
COL6A3-202ENST00000347401 FRYQ5TBA9 3013 aa8.09□□□□□ -1.11
COL6A3-202ENST00000347401 OXTP01178 125 aa8.09□□□□□ -1.11
COL6A3-202ENST00000347401 SMR3BP02814 79 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-202ENST00000347401 LRBAP50851 2863 aa8.07□□□□□ -1.12
COL6A3-202ENST00000347401 CASC10Q5T4H9 136 aa8.07□□□□□ -1.12
COL6A3-202ENST00000347401 SEC61BP60468 96 aaKnown RBP8.05□□□□□ -1.12
COL6A3-202ENST00000347401 PLAC4Q8WY50 150 aa8.05□□□□□ -1.12
COL6A3-202ENST00000347401 LCE6AA0A183 80 aa8.03□□□□□ -1.12
COL6A3-202ENST00000347401 KRTAP26-1Q6PEX3 210 aa8.03□□□□□ -1.12
COL6A3-202ENST00000347401 A6NN06 94 aa8.02□□□□□ -1.13
COL6A3-202ENST00000347401 KRTAP29-1A8MX34 341 aaPredicted RBP8.01□□□□□ -1.13
COL6A3-202ENST00000347401 KRTAP10-3P60369 221 aa8.01□□□□□ -1.13
COL6A3-202ENST00000347401 CHD7Q9P2D1 2997 aa7.99□□□□□ -1.13
COL6A3-202ENST00000347401 KRTAP25-1Q3LHN0 102 aa7.99□□□□□ -1.13
COL6A3-202ENST00000347401 RPS29P62273 56 aaKnown RBP7.99□□□□□ -1.13
COL6A3-202ENST00000347401 M0QZ58 72 aa7.98□□□□□ -1.13
COL6A3-202ENST00000347401 XIRP2A4UGR9 3374 aa7.98□□□□□ -1.13
COL6A3-202ENST00000347401 PANO1I0J062 215 aa7.97□□□□□ -1.13
COL6A3-202ENST00000347401 KRTAP4-16G5E9R7 235 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-202ENST00000347401 KALRNO60229 2985 aa7.95□□□□□ -1.14
COL6A3-202ENST00000347401 REV3LO60673 3130 aa7.95□□□□□ -1.14
COL6A3-202ENST00000347401 CHD9Q3L8U1 2897 aa7.94□□□□□ -1.14
COL6A3-202ENST00000347401 FLNCQ14315 2725 aa7.94□□□□□ -1.14
COL6A3-202ENST00000347401 Q8NDZ9 215 aa7.94□□□□□ -1.14
COL6A3-202ENST00000347401 PRUNE2Q8WUY3 3088 aa7.91□□□□□ -1.14
COL6A3-202ENST00000347401 KRTAP1-3Q8IUG1 177 aa7.91□□□□□ -1.14
COL6A3-202ENST00000347401 NIPBLQ6KC79 2804 aaeCLIP7.91□□□□□ -1.14
COL6A3-202ENST00000347401 C20orf166-AS1Q96NR2 134 aa7.89□□□□□ -1.15
COL6A3-202ENST00000347401 WDFY4Q6ZS81 3184 aa7.88□□□□□ -1.15
COL6A3-202ENST00000347401 KRTAP1-1Q07627 177 aa7.86□□□□□ -1.15
COL6A3-202ENST00000347401 NDUFAF8A1L188 74 aa7.86□□□□□ -1.15
COL6A3-202ENST00000347401 ADM2Q7Z4H4 148 aa7.85□□□□□ -1.15
COL6A3-202ENST00000347401 ASH1LQ9NR48 2969 aaKnown RBP7.84□□□□□ -1.15
COL6A3-202ENST00000347401 TACC2O95359 2948 aa7.83□□□□□ -1.16
COL6A3-202ENST00000347401 MKI67P46013 3256 aaKnown RBP7.81□□□□□ -1.16
COL6A3-202ENST00000347401 FREM2Q5SZK8 3169 aa7.8□□□□□ -1.16
COL6A3-202ENST00000347401 NF1P21359 2839 aa7.78□□□□□ -1.16
COL6A3-202ENST00000347401 CRYBG3Q68DQ2 2970 aa7.78□□□□□ -1.16
COL6A3-202ENST00000347401 PP632Q6XCG6 107 aa7.78□□□□□ -1.16
COL6A3-202ENST00000347401 RANBP2P49792 3224 aaKnown RBP7.75□□□□□ -1.17
COL6A3-202ENST00000347401 TENM1Q9UKZ4 2725 aa7.75□□□□□ -1.17
COL6A3-202ENST00000347401 NBEAQ8NFP9 2946 aa7.75□□□□□ -1.17
COL6A3-202ENST00000347401 HIVEP1P15822 2718 aa7.75□□□□□ -1.17
COL6A3-202ENST00000347401 CELSR3Q9NYQ7 3312 aa7.74□□□□□ -1.17
COL6A3-202ENST00000347401 TENM3Q9P273 2699 aa7.73□□□□□ -1.17
COL6A3-202ENST00000347401 CELSR2Q9HCU4 2923 aa7.72□□□□□ -1.17
COL6A3-202ENST00000347401 DMXL2Q8TDJ6 3036 aa7.71□□□□□ -1.17
COL6A3-202ENST00000347401 UNC80Q8N2C7 3258 aa7.7□□□□□ -1.18
COL6A3-202ENST00000347401 COL12A1Q99715 3063 aa7.7□□□□□ -1.18
COL6A3-202ENST00000347401 HTTP42858 3142 aa7.69□□□□□ -1.18
COL6A3-202ENST00000347401 LAMA3Q16787 3333 aa7.68□□□□□ -1.18
COL6A3-202ENST00000347401 LAMA1P25391 3075 aa7.67□□□□□ -1.18
COL6A3-202ENST00000347401 ZZEF1O43149 2961 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms