RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 Q5XG85 94 aa13.69□□□□□ -0.22
NPAS3-201ENST00000346562 ADM2Q7Z4H4 148 aa13.63□□□□□ -0.23
NPAS3-201ENST00000346562 CENPFP49454 3210 aa13.62□□□□□ -0.23
NPAS3-201ENST00000346562 HECTD1Q9ULT8 2610 aa13.61□□□□□ -0.23
NPAS3-201ENST00000346562 Q6ZR54 194 aa13.61□□□□□ -0.23
NPAS3-201ENST00000346562 UTRNP46939 3433 aa13.58□□□□□ -0.23
NPAS3-201ENST00000346562 EPG5Q9HCE0 2579 aa13.57□□□□□ -0.24
NPAS3-201ENST00000346562 CYSTM1Q9H1C7 97 aa13.56□□□□□ -0.24
NPAS3-201ENST00000346562 MGAM2Q2M2H8 2515 aa13.54□□□□□ -0.24
NPAS3-201ENST00000346562 PANO1I0J062 215 aa13.44□□□□□ -0.26
NPAS3-201ENST00000346562 KRTAP4-16G5E9R7 235 aaPredicted RBP13.44□□□□□ -0.26
NPAS3-201ENST00000346562 SPATA8Q6RVD6 105 aa13.42□□□□□ -0.26
NPAS3-201ENST00000346562 A0A087X002 238 aa13.4□□□□□ -0.26
NPAS3-201ENST00000346562 USP24Q9UPU5 2620 aa13.4□□□□□ -0.26
NPAS3-201ENST00000346562 RPS29P62273 56 aaKnown RBP13.4□□□□□ -0.27
NPAS3-201ENST00000346562 H3BS24 57 aa13.37□□□□□ -0.27
NPAS3-201ENST00000346562 KRTAP29-1A8MX34 341 aaPredicted RBP13.36□□□□□ -0.27
NPAS3-201ENST00000346562 ASB16-AS1Q495Z4 193 aa13.35□□□□□ -0.27
NPAS3-201ENST00000346562 FLNAP21333 2647 aaKnown RBP13.34□□□□□ -0.27
NPAS3-201ENST00000346562 FLNBO75369 2602 aaKnown RBP13.34□□□□□ -0.27
NPAS3-201ENST00000346562 ITPR3Q14573 2671 aa13.23□□□□□ -0.29
NPAS3-201ENST00000346562 A8MUU9 505 aa13.18□□□□□ -0.3
NPAS3-201ENST00000346562 NOTCH2NLQ7Z3S9 236 aa13.15□□□□□ -0.3
NPAS3-201ENST00000346562 DNAH12Q6ZR08 3092 aa13.12□□□□□ -0.31
NPAS3-201ENST00000346562 Q6ZRN7 208 aaPredicted RBP13.11□□□□□ -0.31
NPAS3-201ENST00000346562 ATRQ13535 2644 aa13.1□□□□□ -0.31
NPAS3-201ENST00000346562 HELZ2Q9BYK8 2649 aaKnown RBP13.09□□□□□ -0.31
NPAS3-201ENST00000346562 BPTFQ12830 3046 aa13.07□□□□□ -0.32
NPAS3-201ENST00000346562 MAST4O15021 2626 aa13.05□□□□□ -0.32
NPAS3-201ENST00000346562 KRTAP11-1Q8IUC1 163 aa13.05□□□□□ -0.32
NPAS3-201ENST00000346562 C20orf166-AS1Q96NR2 134 aa13.04□□□□□ -0.32
NPAS3-201ENST00000346562 KRTAP13-2Q52LG2 175 aa12.98□□□□□ -0.33
NPAS3-201ENST00000346562 A8MU10 97 aa12.96□□□□□ -0.34
NPAS3-201ENST00000346562 KRTAP25-1Q3LHN0 102 aa12.95□□□□□ -0.34
NPAS3-201ENST00000346562 CEP350Q5VT06 3117 aa12.93□□□□□ -0.34
NPAS3-201ENST00000346562 KRTAP13-1Q8IUC0 172 aa12.88□□□□□ -0.35
NPAS3-201ENST00000346562 KRTAP7-1Q8IUC3 87 aa12.87□□□□□ -0.35
NPAS3-201ENST00000346562 TNP1P09430 55 aa12.85□□□□□ -0.35
NPAS3-201ENST00000346562 KRTAP16-1A8MUX0 517 aa12.82□□□□□ -0.36
NPAS3-201ENST00000346562 KRTAP21-3Q3LHN1 58 aa12.79□□□□□ -0.36
NPAS3-201ENST00000346562 STAB1Q9NY15 2570 aa12.78□□□□□ -0.36
NPAS3-201ENST00000346562 A6NN06 94 aa12.77□□□□□ -0.37
NPAS3-201ENST00000346562 CFAP46Q8IYW2 2715 aa12.77□□□□□ -0.37
NPAS3-201ENST00000346562 PCNTO95613 3336 aa12.77□□□□□ -0.37
NPAS3-201ENST00000346562 PRRC2CQ9Y520 2896 aaKnown RBP12.71□□□□□ -0.37
NPAS3-201ENST00000346562 FLG2Q5D862 2391 aaPredicted RBP12.68□□□□□ -0.38
NPAS3-201ENST00000346562 NBEAL1Q6ZS30 2694 aa12.63□□□□□ -0.39
NPAS3-201ENST00000346562 C10orf95Q9H7T3 257 aa12.58□□□□□ -0.4
NPAS3-201ENST00000346562 HTTP42858 3142 aa12.57□□□□□ -0.4
NPAS3-201ENST00000346562 C5orf42Q9H799 3197 aa12.57□□□□□ -0.4
NPAS3-201ENST00000346562 DMBT1Q9UGM3 2413 aaPredicted RBP12.56□□□□□ -0.4
NPAS3-201ENST00000346562 CHD7Q9P2D1 2997 aa12.53□□□□□ -0.4
NPAS3-201ENST00000346562 NDUFAF8A1L188 74 aa12.49□□□□□ -0.41
NPAS3-201ENST00000346562 MKI67P46013 3256 aaKnown RBP12.48□□□□□ -0.41
NPAS3-201ENST00000346562 TEX15Q9BXT5 2789 aa12.46□□□□□ -0.42
NPAS3-201ENST00000346562 PP632Q6XCG6 107 aa12.45□□□□□ -0.42
NPAS3-201ENST00000346562 KRTAP10-8P60410 259 aa12.43□□□□□ -0.42
NPAS3-201ENST00000346562 RANBP2P49792 3224 aaKnown RBP12.42□□□□□ -0.42
NPAS3-201ENST00000346562 XP32Q5T750 250 aa12.42□□□□□ -0.42
NPAS3-201ENST00000346562 CHD6Q8TD26 2715 aa12.37□□□□□ -0.43
NPAS3-201ENST00000346562 TEP1Q99973 2627 aaKnown RBP12.35□□□□□ -0.43
NPAS3-201ENST00000346562 LAMA3Q16787 3333 aa12.34□□□□□ -0.43
NPAS3-201ENST00000346562 A0A1B0GVY2 172 aa12.33□□□□□ -0.44
NPAS3-201ENST00000346562 BRCA2P51587 3418 aa12.33□□□□□ -0.44
NPAS3-201ENST00000346562 CHD9Q3L8U1 2897 aa12.31□□□□□ -0.44
NPAS3-201ENST00000346562 COL6A5A8TX70 2615 aa12.28□□□□□ -0.44
NPAS3-201ENST00000346562 GCN1Q92616 2671 aaKnown RBP12.27□□□□□ -0.45
NPAS3-201ENST00000346562 KRTAP1-4P0C5Y4 121 aa12.26□□□□□ -0.45
NPAS3-201ENST00000346562 UNC79Q9P2D8 2635 aa12.25□□□□□ -0.45
NPAS3-201ENST00000346562 TPRXLQ17RH7 258 aa12.25□□□□□ -0.45
NPAS3-201ENST00000346562 AKAP13Q12802 2813 aa12.24□□□□□ -0.45
NPAS3-201ENST00000346562 CENPEQ02224 2701 aa12.23□□□□□ -0.45
NPAS3-201ENST00000346562 PRO2289Q9P1D8 64 aa12.19□□□□□ -0.46
NPAS3-201ENST00000346562 KRTAP10-10P60014 251 aa12.16□□□□□ -0.46
NPAS3-201ENST00000346562 BAHCC1Q9P281 2608 aa12.13□□□□□ -0.47
NPAS3-201ENST00000346562 SETXQ7Z333 2677 aaKnown RBP12.12□□□□□ -0.47
NPAS3-201ENST00000346562 STAB2Q8WWQ8 2551 aa12.08□□□□□ -0.48
NPAS3-201ENST00000346562 PRUNE2Q8WUY3 3088 aa12.08□□□□□ -0.48
NPAS3-201ENST00000346562 TRANK1O15050 2925 aa12.03□□□□□ -0.48
NPAS3-201ENST00000346562 NOTCH1P46531 2555 aa12.03□□□□□ -0.48
NPAS3-201ENST00000346562 ZNF292O60281 2723 aa12.01□□□□□ -0.49
NPAS3-201ENST00000346562 NSD1Q96L73 2696 aaPredicted RBP11.98□□□□□ -0.49
NPAS3-201ENST00000346562 H0YAA0 97 aa11.98□□□□□ -0.49
NPAS3-201ENST00000346562 MGAQ8IWI9 3026 aa11.97□□□□□ -0.49
NPAS3-201ENST00000346562 KMT2BQ9UMN6 2715 aaPredicted RBP11.96□□□□□ -0.49
NPAS3-201ENST00000346562 UNC80Q8N2C7 3258 aa11.96□□□□□ -0.5
NPAS3-201ENST00000346562 P0C880 135 aa11.95□□□□□ -0.5
NPAS3-201ENST00000346562 LAMA2P24043 3122 aaKnown RBP11.95□□□□□ -0.5
NPAS3-201ENST00000346562 CDH23Q9H251 3354 aa11.95□□□□□ -0.5
NPAS3-201ENST00000346562 IGSF10Q6WRI0 2623 aa11.95□□□□□ -0.5
NPAS3-201ENST00000346562 NBEAL2Q6ZNJ1 2754 aa11.94□□□□□ -0.5
NPAS3-201ENST00000346562 ITPR2Q14571 2701 aa11.93□□□□□ -0.5
NPAS3-201ENST00000346562 KRTAP13-3Q3SY46 172 aa11.93□□□□□ -0.5
NPAS3-201ENST00000346562 A0A0C4DFX4 3053 aa11.85□□□□□ -0.51
NPAS3-201ENST00000346562 MAP1AP78559 2803 aaPredicted RBP11.82□□□□□ -0.52
NPAS3-201ENST00000346562 XIRP2A4UGR9 3374 aa11.76□□□□□ -0.53
NPAS3-201ENST00000346562 UBR5O95071 2799 aaPredicted RBP11.72□□□□□ -0.53
NPAS3-201ENST00000346562 SZT2Q5T011 3432 aa11.71□□□□□ -0.53
NPAS3-201ENST00000346562 CFAP54Q96N23 3096 aa11.69□□□□□ -0.54
NPAS3-201ENST00000346562 WDFY4Q6ZS81 3184 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms