RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 LCE6AA0A183 80 aa7.32□□□□□ -1.24
COL12A1-202ENST00000345356 SPATA8Q6RVD6 105 aa7.32□□□□□ -1.24
COL12A1-202ENST00000345356 ADM2Q7Z4H4 148 aa7.32□□□□□ -1.24
COL12A1-202ENST00000345356 ROMO1P60602 79 aa7.31□□□□□ -1.24
COL12A1-202ENST00000345356 MGAM2Q2M2H8 2515 aa7.31□□□□□ -1.24
COL12A1-202ENST00000345356 KRTAP1-3Q8IUG1 177 aa7.31□□□□□ -1.24
COL12A1-202ENST00000345356 LAMA2P24043 3122 aaKnown RBP7.29□□□□□ -1.24
COL12A1-202ENST00000345356 KRTAP4-16G5E9R7 235 aaPredicted RBP7.29□□□□□ -1.24
COL12A1-202ENST00000345356 AKAP13Q12802 2813 aa7.28□□□□□ -1.24
COL12A1-202ENST00000345356 SMR3BP02814 79 aaPredicted RBP7.28□□□□□ -1.24
COL12A1-202ENST00000345356 FLNAP21333 2647 aaKnown RBP7.26□□□□□ -1.25
COL12A1-202ENST00000345356 KRTAP1-1Q07627 177 aa7.26□□□□□ -1.25
COL12A1-202ENST00000345356 RPL37P61927 97 aaKnown RBP7.26□□□□□ -1.25
COL12A1-202ENST00000345356 H1FX-AS1Q4G0G2 97 aa7.25□□□□□ -1.25
COL12A1-202ENST00000345356 CHD6Q8TD26 2715 aa7.23□□□□□ -1.25
COL12A1-202ENST00000345356 KRTAP16-1A8MUX0 517 aa7.22□□□□□ -1.25
COL12A1-202ENST00000345356 KRTAP25-1Q3LHN0 102 aa7.22□□□□□ -1.25
COL12A1-202ENST00000345356 ATRQ13535 2644 aa7.22□□□□□ -1.25
COL12A1-202ENST00000345356 CHD9Q3L8U1 2897 aa7.2□□□□□ -1.26
COL12A1-202ENST00000345356 LINC00483Q53H64 154 aa7.19□□□□□ -1.26
COL12A1-202ENST00000345356 GCN1Q92616 2671 aaKnown RBP7.19□□□□□ -1.26
COL12A1-202ENST00000345356 PLAC8Q9NZF1 115 aa7.19□□□□□ -1.26
COL12A1-202ENST00000345356 CAMK2N1Q7Z7J9 78 aa7.19□□□□□ -1.26
COL12A1-202ENST00000345356 FREM2Q5SZK8 3169 aa7.18□□□□□ -1.26
COL12A1-202ENST00000345356 M0R2T5 61 aa7.18□□□□□ -1.26
COL12A1-202ENST00000345356 UNC79Q9P2D8 2635 aa7.18□□□□□ -1.26
COL12A1-202ENST00000345356 FLNBO75369 2602 aaKnown RBP7.18□□□□□ -1.26
COL12A1-202ENST00000345356 ITPR3Q14573 2671 aa7.17□□□□□ -1.26
COL12A1-202ENST00000345356 BRCA2P51587 3418 aa7.16□□□□□ -1.26
COL12A1-202ENST00000345356 S4R3F8 94 aa7.16□□□□□ -1.26
COL12A1-202ENST00000345356 A0A087X002 238 aa7.15□□□□□ -1.26
COL12A1-202ENST00000345356 NOTCH2NLQ7Z3S9 236 aa7.15□□□□□ -1.26
COL12A1-202ENST00000345356 MKI67P46013 3256 aaKnown RBP7.15□□□□□ -1.26
COL12A1-202ENST00000345356 HECTD1Q9ULT8 2610 aa7.15□□□□□ -1.26
COL12A1-202ENST00000345356 CENPEQ02224 2701 aa7.14□□□□□ -1.27
COL12A1-202ENST00000345356 KRTAP1-5Q9BYS1 174 aa7.13□□□□□ -1.27
COL12A1-202ENST00000345356 HTTP42858 3142 aa7.13□□□□□ -1.27
COL12A1-202ENST00000345356 TRIOO75962 3097 aa7.12□□□□□ -1.27
COL12A1-202ENST00000345356 NBEAL1Q6ZS30 2694 aa7.1□□□□□ -1.27
COL12A1-202ENST00000345356 MGAQ8IWI9 3026 aa7.1□□□□□ -1.27
COL12A1-202ENST00000345356 NDUFAF8A1L188 74 aa7.09□□□□□ -1.27
COL12A1-202ENST00000345356 NBEAL2Q6ZNJ1 2754 aa7.09□□□□□ -1.27
COL12A1-202ENST00000345356 FRYQ5TBA9 3013 aa7.08□□□□□ -1.28
COL12A1-202ENST00000345356 Q6ZSA8 131 aa7.07□□□□□ -1.28
COL12A1-202ENST00000345356 RANBP2P49792 3224 aaKnown RBP7.06□□□□□ -1.28
COL12A1-202ENST00000345356 LAMA3Q16787 3333 aa7.06□□□□□ -1.28
COL12A1-202ENST00000345356 PANO1I0J062 215 aa7.05□□□□□ -1.28
COL12A1-202ENST00000345356 MAST4O15021 2626 aa7.04□□□□□ -1.28
COL12A1-202ENST00000345356 DMBT1Q9UGM3 2413 aaPredicted RBP7.04□□□□□ -1.28
COL12A1-202ENST00000345356 NOTCH1P46531 2555 aa7.04□□□□□ -1.28
COL12A1-202ENST00000345356 NBEAQ8NFP9 2946 aa7.03□□□□□ -1.28
COL12A1-202ENST00000345356 R4GN34 69 aa7.03□□□□□ -1.28
COL12A1-202ENST00000345356 WDFY4Q6ZS81 3184 aa7□□□□□ -1.29
COL12A1-202ENST00000345356 KRTAP7-1Q8IUC3 87 aa7□□□□□ -1.29
COL12A1-202ENST00000345356 TRANK1O15050 2925 aa7□□□□□ -1.29
COL12A1-202ENST00000345356 VPS13AQ96RL7 3174 aa7□□□□□ -1.29
COL12A1-202ENST00000345356 KRTAP11-1Q8IUC1 163 aa6.99□□□□□ -1.29
COL12A1-202ENST00000345356 FLG2Q5D862 2391 aaPredicted RBP6.98□□□□□ -1.29
COL12A1-202ENST00000345356 MAP1AP78559 2803 aaPredicted RBP6.98□□□□□ -1.29
COL12A1-202ENST00000345356 UNC80Q8N2C7 3258 aa6.98□□□□□ -1.29
COL12A1-202ENST00000345356 DSPP15924 2871 aaKnown RBP6.98□□□□□ -1.29
COL12A1-202ENST00000345356 KALRNO60229 2985 aa6.97□□□□□ -1.29
COL12A1-202ENST00000345356 HELZ2Q9BYK8 2649 aaKnown RBP6.96□□□□□ -1.3
COL12A1-202ENST00000345356 A8MUU9 505 aa6.96□□□□□ -1.3
COL12A1-202ENST00000345356 CDH23Q9H251 3354 aa6.95□□□□□ -1.3
COL12A1-202ENST00000345356 M0QZ58 72 aa6.94□□□□□ -1.3
COL12A1-202ENST00000345356 CFAP46Q8IYW2 2715 aa6.93□□□□□ -1.3
COL12A1-202ENST00000345356 ITPR1Q14643 2758 aa6.92□□□□□ -1.3
COL12A1-202ENST00000345356 CELSR3Q9NYQ7 3312 aa6.92□□□□□ -1.3
COL12A1-202ENST00000345356 XIRP2A4UGR9 3374 aa6.92□□□□□ -1.3
COL12A1-202ENST00000345356 COL6A5A8TX70 2615 aa6.91□□□□□ -1.3
COL12A1-202ENST00000345356 BAHCC1Q9P281 2608 aa6.9□□□□□ -1.3
COL12A1-202ENST00000345356 STAB1Q9NY15 2570 aa6.89□□□□□ -1.31
COL12A1-202ENST00000345356 TEX15Q9BXT5 2789 aa6.88□□□□□ -1.31
COL12A1-202ENST00000345356 SEC61BP60468 96 aaKnown RBP6.87□□□□□ -1.31
COL12A1-202ENST00000345356 PRUNE2Q8WUY3 3088 aa6.86□□□□□ -1.31
COL12A1-202ENST00000345356 DNAH14Q0VDD8 3507 aa6.84□□□□□ -1.31
COL12A1-202ENST00000345356 KRTAP10-1P60331 282 aa6.83□□□□□ -1.32
COL12A1-202ENST00000345356 KRTAP13-1Q8IUC0 172 aa6.82□□□□□ -1.32
COL12A1-202ENST00000345356 KRTAP10-2P60368 255 aa6.82□□□□□ -1.32
COL12A1-202ENST00000345356 SETXQ7Z333 2677 aaKnown RBP6.79□□□□□ -1.32
COL12A1-202ENST00000345356 ASH1LQ9NR48 2969 aaKnown RBP6.79□□□□□ -1.32
COL12A1-202ENST00000345356 C20orf166-AS1Q96NR2 134 aa6.79□□□□□ -1.32
COL12A1-202ENST00000345356 VCANP13611 3396 aa6.78□□□□□ -1.32
COL12A1-202ENST00000345356 STAB2Q8WWQ8 2551 aa6.78□□□□□ -1.32
COL12A1-202ENST00000345356 PLAC4Q8WY50 150 aa6.78□□□□□ -1.32
COL12A1-202ENST00000345356 SZT2Q5T011 3432 aa6.77□□□□□ -1.33
COL12A1-202ENST00000345356 ZNF292O60281 2723 aa6.77□□□□□ -1.33
COL12A1-202ENST00000345356 UBR5O95071 2799 aaPredicted RBP6.74□□□□□ -1.33
COL12A1-202ENST00000345356 TEP1Q99973 2627 aaKnown RBP6.74□□□□□ -1.33
COL12A1-202ENST00000345356 LAMA1P25391 3075 aa6.74□□□□□ -1.33
COL12A1-202ENST00000345356 KRTAP13-2Q52LG2 175 aa6.72□□□□□ -1.33
COL12A1-202ENST00000345356 C10orf95Q9H7T3 257 aa6.72□□□□□ -1.33
COL12A1-202ENST00000345356 APCP25054 2843 aa6.71□□□□□ -1.34
COL12A1-202ENST00000345356 DMXL2Q8TDJ6 3036 aa6.71□□□□□ -1.34
COL12A1-202ENST00000345356 ADGRG4Q8IZF6 3080 aa6.7□□□□□ -1.34
COL12A1-202ENST00000345356 H0YAA0 97 aa6.7□□□□□ -1.34
COL12A1-202ENST00000345356 NSD1Q96L73 2696 aaPredicted RBP6.7□□□□□ -1.34
COL12A1-202ENST00000345356 LRBAP50851 2863 aa6.7□□□□□ -1.34
COL12A1-202ENST00000345356 Q6ZRN7 208 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms