RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 IGLV1-50A0A075B6I6 118 aa10.47□□□□□ -0.73
NPHP3-201ENST00000337331 PRAC1Q96KF2 57 aa10.46□□□□□ -0.73
NPHP3-201ENST00000337331 KRTAP10-3P60369 221 aa10.46□□□□□ -0.74
NPHP3-201ENST00000337331 ASH1LQ9NR48 2969 aaKnown RBP10.46□□□□□ -0.74
NPHP3-201ENST00000337331 UBR5O95071 2799 aaPredicted RBP10.45□□□□□ -0.74
NPHP3-201ENST00000337331 ATMQ13315 3056 aa10.44□□□□□ -0.74
NPHP3-201ENST00000337331 NBEAL2Q6ZNJ1 2754 aa10.44□□□□□ -0.74
NPHP3-201ENST00000337331 DMDP11532 3685 aa10.43□□□□□ -0.74
NPHP3-201ENST00000337331 FLNCQ14315 2725 aa10.42□□□□□ -0.74
NPHP3-201ENST00000337331 DSCR10P59022 87 aa10.42□□□□□ -0.74
NPHP3-201ENST00000337331 RTL8CO15255 209 aa10.41□□□□□ -0.74
NPHP3-201ENST00000337331 KRTAP10-11P60412 298 aa10.41□□□□□ -0.74
NPHP3-201ENST00000337331 A0A1B0GU69 56 aa10.4□□□□□ -0.75
NPHP3-201ENST00000337331 IGFL1Q6UW32 110 aa10.39□□□□□ -0.75
NPHP3-201ENST00000337331 KRTAP1-3Q8IUG1 177 aa10.39□□□□□ -0.75
NPHP3-201ENST00000337331 Q75L30 129 aa10.38□□□□□ -0.75
NPHP3-201ENST00000337331 SPANXA2-OT1Q8N9U9 137 aa10.38□□□□□ -0.75
NPHP3-201ENST00000337331 A8MWP4 228 aa10.38□□□□□ -0.75
NPHP3-201ENST00000337331 ACYP2P14621 99 aa10.37□□□□□ -0.75
NPHP3-201ENST00000337331 IGLV5-48A0A075B6I7 105 aa10.35□□□□□ -0.75
NPHP3-201ENST00000337331 K7EIL1 84 aa10.35□□□□□ -0.75
NPHP3-201ENST00000337331 LINC01554Q52M75 96 aa10.34□□□□□ -0.75
NPHP3-201ENST00000337331 COL12A1Q99715 3063 aa10.34□□□□□ -0.75
NPHP3-201ENST00000337331 LINC00313P59037 77 aa10.32□□□□□ -0.76
NPHP3-201ENST00000337331 KRTAP1-1Q07627 177 aa10.32□□□□□ -0.76
NPHP3-201ENST00000337331 ZFHX4Q86UP3 3567 aa10.31□□□□□ -0.76
NPHP3-201ENST00000337331 IGLV8-61A0A075B6I0 122 aa10.31□□□□□ -0.76
NPHP3-201ENST00000337331 CASC10Q5T4H9 136 aa10.31□□□□□ -0.76
NPHP3-201ENST00000337331 TLX1NBP0CAT3 122 aa10.29□□□□□ -0.76
NPHP3-201ENST00000337331 MRPL34Q9BQ48 92 aaKnown RBP10.28□□□□□ -0.76
NPHP3-201ENST00000337331 SPINK7P58062 85 aa10.28□□□□□ -0.76
NPHP3-201ENST00000337331 PRR26Q8N8Z3 221 aa10.28□□□□□ -0.76
NPHP3-201ENST00000337331 TYMSOSQ8TAI1 123 aa10.26□□□□□ -0.77
NPHP3-201ENST00000337331 C9orf163Q8N9P6 203 aa10.26□□□□□ -0.77
NPHP3-201ENST00000337331 CSMD1Q96PZ7 3565 aa10.26□□□□□ -0.77
NPHP3-201ENST00000337331 PLA2G2DQ9UNK4 145 aa10.25□□□□□ -0.77
NPHP3-201ENST00000337331 ASPMQ8IZT6 3477 aa10.24□□□□□ -0.77
NPHP3-201ENST00000337331 NSD1Q96L73 2696 aaPredicted RBP10.23□□□□□ -0.77
NPHP3-201ENST00000337331 ZCCHC13Q8WW36 166 aaKnown RBP10.23□□□□□ -0.77
NPHP3-201ENST00000337331 C8orf17Q9NRJ1 99 aa10.22□□□□□ -0.77
NPHP3-201ENST00000337331 FAM229AH3BQW9 127 aa10.22□□□□□ -0.77
NPHP3-201ENST00000337331 SPRR4Q96PI1 79 aa10.21□□□□□ -0.78
NPHP3-201ENST00000337331 ANAPC11Q9NYG5 84 aa10.2□□□□□ -0.78
NPHP3-201ENST00000337331 A6NN06 94 aa10.2□□□□□ -0.78
NPHP3-201ENST00000337331 LINC01558Q9Y6Z2 57 aa10.2□□□□□ -0.78
NPHP3-201ENST00000337331 IGLV7-46A0A075B6I9 117 aa10.19□□□□□ -0.78
NPHP3-201ENST00000337331 LAMA5O15230 3695 aa10.19□□□□□ -0.78
NPHP3-201ENST00000337331 ZNF861PO60384 105 aa10.18□□□□□ -0.78
NPHP3-201ENST00000337331 Q96NJ1 140 aa10.18□□□□□ -0.78
NPHP3-201ENST00000337331 MIR22HGQ0VDD5 57 aa10.18□□□□□ -0.78
NPHP3-201ENST00000337331 UQCR11O14957 56 aa10.18□□□□□ -0.78
NPHP3-201ENST00000337331 PLA2G1BP04054 148 aaKnown RBP10.17□□□□□ -0.78
NPHP3-201ENST00000337331 A0A1B0GVX0 72 aa10.16□□□□□ -0.78
NPHP3-201ENST00000337331 A0A087WTM6 91 aa10.15□□□□□ -0.78
NPHP3-201ENST00000337331 STAB2Q8WWQ8 2551 aa10.14□□□□□ -0.79
NPHP3-201ENST00000337331 SSBP3-AS1Q7Z2R9 100 aa10.12□□□□□ -0.79
NPHP3-201ENST00000337331 CNBPP62633 177 aaKnown RBP10.11□□□□□ -0.79
NPHP3-201ENST00000337331 WWC2-AS2Q96NR7 200 aa10.1□□□□□ -0.79
NPHP3-201ENST00000337331 PSORS1C2Q9UIG4 136 aa10.1□□□□□ -0.79
NPHP3-201ENST00000337331 BAHCC1Q9P281 2608 aa10.1□□□□□ -0.79
NPHP3-201ENST00000337331 FLG2Q5D862 2391 aaPredicted RBP10.08□□□□□ -0.8
NPHP3-201ENST00000337331 IGLV5-37A0A075B6J1 123 aa10.07□□□□□ -0.8
NPHP3-201ENST00000337331 CSAG1Q6PB30 78 aa10.07□□□□□ -0.8
NPHP3-201ENST00000337331 SMG1Q96Q15 3661 aaKnown RBP10.07□□□□□ -0.8
NPHP3-201ENST00000337331 ADM2Q7Z4H4 148 aa10.07□□□□□ -0.8
NPHP3-201ENST00000337331 LCE6AA0A183 80 aa10.06□□□□□ -0.8
NPHP3-201ENST00000337331 APLNQ9ULZ1 77 aa10.06□□□□□ -0.8
NPHP3-201ENST00000337331 HRES1P13985 223 aa10.06□□□□□ -0.8
NPHP3-201ENST00000337331 ITPR2Q14571 2701 aa10.05□□□□□ -0.8
NPHP3-201ENST00000337331 RELNP78509 3460 aa10.02□□□□□ -0.8
NPHP3-201ENST00000337331 IGLV7-43P04211 117 aa10.02□□□□□ -0.81
NPHP3-201ENST00000337331 UTP20O75691 2785 aaKnown RBP10.01□□□□□ -0.81
NPHP3-201ENST00000337331 APCP25054 2843 aa9.99□□□□□ -0.81
NPHP3-201ENST00000337331 LINC00304Q8N9R0 145 aa9.96□□□□□ -0.81
NPHP3-201ENST00000337331 SPENQ96T58 3664 aaKnown RBP9.96□□□□□ -0.81
NPHP3-201ENST00000337331 TNP2Q05952 138 aa9.96□□□□□ -0.82
NPHP3-201ENST00000337331 SMR3BP02814 79 aaPredicted RBP9.95□□□□□ -0.82
NPHP3-201ENST00000337331 MMP24-AS1A0A0U1RRL7 71 aa9.94□□□□□ -0.82
NPHP3-201ENST00000337331 SPINT4Q6UDR6 99 aa9.94□□□□□ -0.82
NPHP3-201ENST00000337331 CRYBG3Q68DQ2 2970 aa9.94□□□□□ -0.82
NPHP3-201ENST00000337331 C9orf92A6NGG3 77 aa9.92□□□□□ -0.82
NPHP3-201ENST00000337331 HRNRQ86YZ3 2850 aaPredicted RBP9.92□□□□□ -0.82
NPHP3-201ENST00000337331 KRTAP29-1A8MX34 341 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-201ENST00000337331 CELSR2Q9HCU4 2923 aa9.91□□□□□ -0.82
NPHP3-201ENST00000337331 ZANQ9Y493 2812 aa9.91□□□□□ -0.82
NPHP3-201ENST00000337331 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-201ENST00000337331 SPRR1AP35321 89 aa9.89□□□□□ -0.83
NPHP3-201ENST00000337331 CUBNO60494 3623 aa9.89□□□□□ -0.83
NPHP3-201ENST00000337331 SVEP1Q4LDE5 3571 aa9.88□□□□□ -0.83
NPHP3-201ENST00000337331 LINC00472Q9H8W2 130 aa9.86□□□□□ -0.83
NPHP3-201ENST00000337331 FBN2P35556 2912 aa9.85□□□□□ -0.83
NPHP3-201ENST00000337331 DMBT1Q9UGM3 2413 aaPredicted RBP9.85□□□□□ -0.83
NPHP3-201ENST00000337331 HIVEP1P15822 2718 aa9.84□□□□□ -0.83
NPHP3-201ENST00000337331 DCHS2Q6V1P9 2916 aa9.84□□□□□ -0.83
NPHP3-201ENST00000337331 Q8N1X5 172 aa9.84□□□□□ -0.83
NPHP3-201ENST00000337331 NIPBLQ6KC79 2804 aaeCLIP9.81□□□□□ -0.84
NPHP3-201ENST00000337331 KRTAP26-1Q6PEX3 210 aa9.79□□□□□ -0.84
NPHP3-201ENST00000337331 KRTAP4-16G5E9R7 235 aaPredicted RBP9.76□□□□□ -0.85
NPHP3-201ENST00000337331 CRIPTQ9P021 101 aa9.76□□□□□ -0.85
NPHP3-201ENST00000337331 NF1P21359 2839 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms