RNA–Protein interactions for RNA: ENST00000327367.8

SMAD3-201, Transcript of SMAD family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD3, Length 6,247 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-201ENST00000327367 SPTBN4Q9H254 2564 aa9.82□□□□□ -0.84
SMAD3-201ENST00000327367 PLAC8Q9NZF1 115 aa9.79□□□□□ -0.84
SMAD3-201ENST00000327367 KRTAP1-3Q8IUG1 177 aa9.78□□□□□ -0.84
SMAD3-201ENST00000327367 SPRR1BP22528 89 aa9.76□□□□□ -0.85
SMAD3-201ENST00000327367 ASB16-AS1Q495Z4 193 aa9.76□□□□□ -0.85
SMAD3-201ENST00000327367 Q6ZR54 194 aa9.76□□□□□ -0.85
SMAD3-201ENST00000327367 DNAH12Q6ZR08 3092 aa9.74□□□□□ -0.85
SMAD3-201ENST00000327367 KRTAP1-1Q07627 177 aa9.72□□□□□ -0.85
SMAD3-201ENST00000327367 KRTAP29-1A8MX34 341 aaPredicted RBP9.71□□□□□ -0.85
SMAD3-201ENST00000327367 A0A087X002 238 aa9.71□□□□□ -0.86
SMAD3-201ENST00000327367 NOTCH2NLQ7Z3S9 236 aa9.71□□□□□ -0.86
SMAD3-201ENST00000327367 PLAC4Q8WY50 150 aa9.69□□□□□ -0.86
SMAD3-201ENST00000327367 USP24Q9UPU5 2620 aa9.68□□□□□ -0.86
SMAD3-201ENST00000327367 C20orf166-AS1Q96NR2 134 aa9.67□□□□□ -0.86
SMAD3-201ENST00000327367 KRTAP1-5Q9BYS1 174 aa9.67□□□□□ -0.86
SMAD3-201ENST00000327367 PRRC2CQ9Y520 2896 aaKnown RBP9.66□□□□□ -0.86
SMAD3-201ENST00000327367 FASNP49327 2511 aaKnown RBP9.6□□□□□ -0.87
SMAD3-201ENST00000327367 PANO1I0J062 215 aa9.59□□□□□ -0.87
SMAD3-201ENST00000327367 KRTAP4-16G5E9R7 235 aaPredicted RBP9.54□□□□□ -0.88
SMAD3-201ENST00000327367 C5orf42Q9H799 3197 aa9.52□□□□□ -0.89
SMAD3-201ENST00000327367 CEP350Q5VT06 3117 aa9.5□□□□□ -0.89
SMAD3-201ENST00000327367 KRTAP10-1P60331 282 aa9.5□□□□□ -0.89
SMAD3-201ENST00000327367 KRTAP10-2P60368 255 aa9.49□□□□□ -0.89
SMAD3-201ENST00000327367 FLG2Q5D862 2391 aaPredicted RBP9.46□□□□□ -0.89
SMAD3-201ENST00000327367 A8MUU9 505 aa9.46□□□□□ -0.89
SMAD3-201ENST00000327367 MGAM2Q2M2H8 2515 aa9.46□□□□□ -0.9
SMAD3-201ENST00000327367 A0A0C4DFX4 3053 aa9.45□□□□□ -0.9
SMAD3-201ENST00000327367 SEC61BP60468 96 aaKnown RBP9.44□□□□□ -0.9
SMAD3-201ENST00000327367 Q5VSD8 79 aa9.43□□□□□ -0.9
SMAD3-201ENST00000327367 C10orf95Q9H7T3 257 aa9.43□□□□□ -0.9
SMAD3-201ENST00000327367 CFAP54Q96N23 3096 aa9.42□□□□□ -0.9
SMAD3-201ENST00000327367 KRTAP11-1Q8IUC1 163 aa9.42□□□□□ -0.9
SMAD3-201ENST00000327367 LCE6AA0A183 80 aa9.38□□□□□ -0.91
SMAD3-201ENST00000327367 PCNTO95613 3336 aa9.37□□□□□ -0.91
SMAD3-201ENST00000327367 EPG5Q9HCE0 2579 aa9.33□□□□□ -0.92
SMAD3-201ENST00000327367 DMBT1Q9UGM3 2413 aaPredicted RBP9.29□□□□□ -0.92
SMAD3-201ENST00000327367 FREM2Q5SZK8 3169 aa9.25□□□□□ -0.93
SMAD3-201ENST00000327367 KRTAP7-1Q8IUC3 87 aa9.24□□□□□ -0.93
SMAD3-201ENST00000327367 FLNBO75369 2602 aaKnown RBP9.23□□□□□ -0.93
SMAD3-201ENST00000327367 FLNAP21333 2647 aaKnown RBP9.21□□□□□ -0.93
SMAD3-201ENST00000327367 HECTD1Q9ULT8 2610 aa9.2□□□□□ -0.94
SMAD3-201ENST00000327367 AKAP13Q12802 2813 aa9.2□□□□□ -0.94
SMAD3-201ENST00000327367 ATRQ13535 2644 aa9.17□□□□□ -0.94
SMAD3-201ENST00000327367 CHD6Q8TD26 2715 aa9.15□□□□□ -0.95
SMAD3-201ENST00000327367 NBEAL1Q6ZS30 2694 aa9.14□□□□□ -0.95
SMAD3-201ENST00000327367 ITPR3Q14573 2671 aa9.13□□□□□ -0.95
SMAD3-201ENST00000327367 LAMA2P24043 3122 aaKnown RBP9.12□□□□□ -0.95
SMAD3-201ENST00000327367 TNP1P09430 55 aa9.1□□□□□ -0.95
SMAD3-201ENST00000327367 KRTAP13-2Q52LG2 175 aa9.1□□□□□ -0.95
SMAD3-201ENST00000327367 MKI67P46013 3256 aaKnown RBP9.08□□□□□ -0.96
SMAD3-201ENST00000327367 BRCA2P51587 3418 aa9.06□□□□□ -0.96
SMAD3-201ENST00000327367 MAST4O15021 2626 aa9.05□□□□□ -0.96
SMAD3-201ENST00000327367 H0YAA0 97 aa9□□□□□ -0.97
SMAD3-201ENST00000327367 TRIOO75962 3097 aa9□□□□□ -0.97
SMAD3-201ENST00000327367 LAMA3Q16787 3333 aa8.99□□□□□ -0.97
SMAD3-201ENST00000327367 GCN1Q92616 2671 aaKnown RBP8.99□□□□□ -0.97
SMAD3-201ENST00000327367 KRTAP10-8P60410 259 aa8.98□□□□□ -0.97
SMAD3-201ENST00000327367 CHD7Q9P2D1 2997 aa8.97□□□□□ -0.97
SMAD3-201ENST00000327367 CENPEQ02224 2701 aa8.97□□□□□ -0.97
SMAD3-201ENST00000327367 UNC79Q9P2D8 2635 aa8.97□□□□□ -0.97
SMAD3-201ENST00000327367 KRTAP13-1Q8IUC0 172 aa8.96□□□□□ -0.97
SMAD3-201ENST00000327367 NBEAL2Q6ZNJ1 2754 aa8.94□□□□□ -0.98
SMAD3-201ENST00000327367 P0C880 135 aa8.92□□□□□ -0.98
SMAD3-201ENST00000327367 RANBP2P49792 3224 aaKnown RBP8.91□□□□□ -0.98
SMAD3-201ENST00000327367 CELSR3Q9NYQ7 3312 aa8.91□□□□□ -0.98
SMAD3-201ENST00000327367 RPS29P62273 56 aaKnown RBP8.91□□□□□ -0.98
SMAD3-201ENST00000327367 CFAP46Q8IYW2 2715 aa8.9□□□□□ -0.98
SMAD3-201ENST00000327367 Q6ZRN7 208 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-201ENST00000327367 STAB2Q8WWQ8 2551 aa8.9□□□□□ -0.98
SMAD3-201ENST00000327367 XIRP2A4UGR9 3374 aa8.85□□□□□ -0.99
SMAD3-201ENST00000327367 MGAQ8IWI9 3026 aa8.85□□□□□ -0.99
SMAD3-201ENST00000327367 PRUNE2Q8WUY3 3088 aa8.84□□□□□ -0.99
SMAD3-201ENST00000327367 STAB1Q9NY15 2570 aa8.84□□□□□ -0.99
SMAD3-201ENST00000327367 TEX15Q9BXT5 2789 aa8.81□□□□□ -1
SMAD3-201ENST00000327367 NOTCH1P46531 2555 aa8.81□□□□□ -1
SMAD3-201ENST00000327367 A0A1B0GVY2 172 aa8.79□□□□□ -1
SMAD3-201ENST00000327367 PP632Q6XCG6 107 aa8.78□□□□□ -1
SMAD3-201ENST00000327367 FRYQ5TBA9 3013 aa8.78□□□□□ -1
SMAD3-201ENST00000327367 VPS13AQ96RL7 3174 aa8.78□□□□□ -1
SMAD3-201ENST00000327367 UNC80Q8N2C7 3258 aa8.74□□□□□ -1.01
SMAD3-201ENST00000327367 HTTP42858 3142 aa8.74□□□□□ -1.01
SMAD3-201ENST00000327367 KALRNO60229 2985 aa8.72□□□□□ -1.01
SMAD3-201ENST00000327367 REV3LO60673 3130 aa8.71□□□□□ -1.01
SMAD3-201ENST00000327367 DNAH14Q0VDD8 3507 aa8.71□□□□□ -1.01
SMAD3-201ENST00000327367 CDH23Q9H251 3354 aa8.71□□□□□ -1.02
SMAD3-201ENST00000327367 WDFY4Q6ZS81 3184 aa8.71□□□□□ -1.02
SMAD3-201ENST00000327367 HELZ2Q9BYK8 2649 aaKnown RBP8.69□□□□□ -1.02
SMAD3-201ENST00000327367 COL6A5A8TX70 2615 aa8.69□□□□□ -1.02
SMAD3-201ENST00000327367 BAHCC1Q9P281 2608 aa8.65□□□□□ -1.02
SMAD3-201ENST00000327367 CHD9Q3L8U1 2897 aa8.57□□□□□ -1.04
SMAD3-201ENST00000327367 SETXQ7Z333 2677 aaKnown RBP8.57□□□□□ -1.04
SMAD3-201ENST00000327367 DSPP15924 2871 aaKnown RBP8.56□□□□□ -1.04
SMAD3-201ENST00000327367 XP32Q5T750 250 aa8.55□□□□□ -1.04
SMAD3-201ENST00000327367 TRANK1O15050 2925 aa8.55□□□□□ -1.04
SMAD3-201ENST00000327367 ASH1LQ9NR48 2969 aaKnown RBP8.54□□□□□ -1.04
SMAD3-201ENST00000327367 APCP25054 2843 aa8.54□□□□□ -1.04
SMAD3-201ENST00000327367 TEP1Q99973 2627 aaKnown RBP8.53□□□□□ -1.04
SMAD3-201ENST00000327367 MAP1AP78559 2803 aaPredicted RBP8.53□□□□□ -1.04
SMAD3-201ENST00000327367 ITPR1Q14643 2758 aa8.52□□□□□ -1.04
SMAD3-201ENST00000327367 NSD1Q96L73 2696 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms