RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HRCT1Q6UXD1 115 aa9.12□□□□□ -0.95
LSM1-201ENST00000311351 FAT4Q6V0I7 4981 aa9.11□□□□□ -0.95
LSM1-201ENST00000311351 TEX49A0A1B0GTD5 131 aa9.1□□□□□ -0.95
LSM1-201ENST00000311351 LINC01547P58512 204 aaPredicted RBP9.1□□□□□ -0.95
LSM1-201ENST00000311351 KRTAP19-1Q8IUB9 90 aa9.1□□□□□ -0.95
LSM1-201ENST00000311351 TMEM238LA0A1B0GVL6 79 aa9.09□□□□□ -0.95
LSM1-201ENST00000311351 A6NJY4 79 aa9.09□□□□□ -0.95
LSM1-201ENST00000311351 C2orf91Q6ZV80 131 aa9.09□□□□□ -0.95
LSM1-201ENST00000311351 SMIM29Q86T20 159 aa9.09□□□□□ -0.95
LSM1-201ENST00000311351 RAB37Q96AX2 223 aa9.09□□□□□ -0.95
LSM1-201ENST00000311351 IGLV5-48A0A075B6I7 105 aa9.08□□□□□ -0.96
LSM1-201ENST00000311351 A0A0U1RQV1 116 aa9.08□□□□□ -0.96
LSM1-201ENST00000311351 C12orf57Q99622 126 aa9.08□□□□□ -0.96
LSM1-201ENST00000311351 BVES-AS1Q5T3Y7 98 aa9.07□□□□□ -0.96
LSM1-201ENST00000311351 A0A0B4J2C4 111 aa9.06□□□□□ -0.96
LSM1-201ENST00000311351 CEND1Q8N111 149 aa9.06□□□□□ -0.96
LSM1-201ENST00000311351 LIMD2Q9BT23 127 aa9.06□□□□□ -0.96
LSM1-201ENST00000311351 A0A0G2JQZ4 141 aa9.05□□□□□ -0.96
LSM1-201ENST00000311351 PRO1933Q9H354 126 aa9.05□□□□□ -0.96
LSM1-201ENST00000311351 CFC1BP0CG36 223 aa9.04□□□□□ -0.96
LSM1-201ENST00000311351 CFC1P0CG37 223 aa9.04□□□□□ -0.96
LSM1-201ENST00000311351 H7C2G1 150 aa9.03□□□□□ -0.96
LSM1-201ENST00000311351 LINC00575Q6W349 94 aa9.03□□□□□ -0.96
LSM1-201ENST00000311351 UQCR10Q9UDW1 63 aa9.03□□□□□ -0.96
LSM1-201ENST00000311351 SNCGO76070 127 aa9.02□□□□□ -0.97
LSM1-201ENST00000311351 HSD52Q0P140 79 aa9.02□□□□□ -0.97
LSM1-201ENST00000311351 ASB16-AS1Q495Z4 193 aa9.02□□□□□ -0.97
LSM1-201ENST00000311351 hADV29S1A0JD25 119 aa9.01□□□□□ -0.97
LSM1-201ENST00000311351 CD164Q04900 197 aa9.01□□□□□ -0.97
LSM1-201ENST00000311351 Q6ZQY7 126 aa8.99□□□□□ -0.97
LSM1-201ENST00000311351 PRO1854Q9UHT4 67 aa8.99□□□□□ -0.97
LSM1-201ENST00000311351 H0YGX0 51 aa8.98□□□□□ -0.97
LSM1-201ENST00000311351 FXYD2P54710 66 aa8.97□□□□□ -0.97
LSM1-201ENST00000311351 KRTAP4-1Q9BYQ7 146 aa8.97□□□□□ -0.97
LSM1-201ENST00000311351 F8WEM9 126 aa8.96□□□□□ -0.98
LSM1-201ENST00000311351 SEC61BP60468 96 aaKnown RBP8.96□□□□□ -0.98
LSM1-201ENST00000311351 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.96□□□□□ -0.98
LSM1-201ENST00000311351 C9orf92A6NGG3 77 aa8.95□□□□□ -0.98
LSM1-201ENST00000311351 PPDPFLQ8WWR9 84 aa8.95□□□□□ -0.98
LSM1-201ENST00000311351 SMIM6P0DI80 62 aa8.94□□□□□ -0.98
LSM1-201ENST00000311351 OCIAD2Q56VL3 154 aa8.93□□□□□ -0.98
LSM1-201ENST00000311351 Q5XG85 94 aa8.93□□□□□ -0.98
LSM1-201ENST00000311351 GHRHP01286 108 aa8.92□□□□□ -0.98
LSM1-201ENST00000311351 C1orf195Q5TG92 126 aa8.92□□□□□ -0.98
LSM1-201ENST00000311351 A0A1B0GX51 115 aa8.91□□□□□ -0.98
LSM1-201ENST00000311351 COX6CP09669 75 aa8.89□□□□□ -0.99
LSM1-201ENST00000311351 SNHG12Q9BXW3 62 aa8.89□□□□□ -0.99
LSM1-201ENST00000311351 Q6JHZ5 121 aa8.88□□□□□ -0.99
LSM1-201ENST00000311351 IGLV8-61A0A075B6I0 122 aa8.87□□□□□ -0.99
LSM1-201ENST00000311351 TRIAP1O43715 76 aa8.87□□□□□ -0.99
LSM1-201ENST00000311351 PSMB2P49721 201 aa8.87□□□□□ -0.99
LSM1-201ENST00000311351 IGFL1Q6UW32 110 aa8.87□□□□□ -0.99
LSM1-201ENST00000311351 CLEC2BQ92478 149 aa8.87□□□□□ -0.99
LSM1-201ENST00000311351 K7ERJ3 54 aa8.85□□□□□ -0.99
LSM1-201ENST00000311351 M0R143 59 aa8.85□□□□□ -0.99
LSM1-201ENST00000311351 FAM218AQ96MZ4 157 aa8.85□□□□□ -0.99
LSM1-201ENST00000311351 TCL1BO95988 128 aa8.84□□□□□ -0.99
LSM1-201ENST00000311351 PCOTHQ58A44 107 aa8.84□□□□□ -0.99
LSM1-201ENST00000311351 TRBV7-7A0A0K0K1E9 115 aa8.83□□□□□ -1
LSM1-201ENST00000311351 H3BQ85 93 aa8.83□□□□□ -1
LSM1-201ENST00000311351 H3BUT2 72 aa8.83□□□□□ -1
LSM1-201ENST00000311351 DNAL4O96015 105 aa8.83□□□□□ -1
LSM1-201ENST00000311351 TSTD3H0UI37 97 aa8.82□□□□□ -1
LSM1-201ENST00000311351 KRTAP4-7Q9BYR0 210 aa8.82□□□□□ -1
LSM1-201ENST00000311351 LOC105371267A0A1B0GV96 52 aa8.77□□□□□ -1.01
LSM1-201ENST00000311351 SCGB1C2P0DMR2 95 aa8.77□□□□□ -1.01
LSM1-201ENST00000311351 FABP2P12104 132 aa8.77□□□□□ -1.01
LSM1-201ENST00000311351 NDUFV3P56181 108 aaKnown RBP8.77□□□□□ -1.01
LSM1-201ENST00000311351 ORMDL1Q9P0S3 153 aa8.77□□□□□ -1.01
LSM1-201ENST00000311351 LCE1DQ5T752 114 aa8.75□□□□□ -1.01
LSM1-201ENST00000311351 TMEM256-PLSCR3K7ERE1 68 aa8.74□□□□□ -1.01
LSM1-201ENST00000311351 RPL37P61927 97 aaKnown RBP8.74□□□□□ -1.01
LSM1-201ENST00000311351 H3BMG7 143 aa8.73□□□□□ -1.01
LSM1-201ENST00000311351 TRACP01848 142 aa8.73□□□□□ -1.01
LSM1-201ENST00000311351 KRTAP19-2Q3LHN2 52 aa8.71□□□□□ -1.02
LSM1-201ENST00000311351 LST1O00453 97 aa8.7□□□□□ -1.02
LSM1-201ENST00000311351 Q6Q795 121 aa8.7□□□□□ -1.02
LSM1-201ENST00000311351 TEN1Q86WV5 123 aa8.7□□□□□ -1.02
LSM1-201ENST00000311351 SS18L2Q9UHA2 77 aa8.7□□□□□ -1.02
LSM1-201ENST00000311351 LYRM7Q5U5X0 104 aa8.68□□□□□ -1.02
LSM1-201ENST00000311351 UBE2V1Q13404 147 aa8.67□□□□□ -1.02
LSM1-201ENST00000311351 OBSCN-AS1Q96MR7 158 aa8.67□□□□□ -1.02
LSM1-201ENST00000311351 A0A087WSZ3 146 aa8.66□□□□□ -1.02
LSM1-201ENST00000311351 A0A1B0GV72 72 aa8.65□□□□□ -1.02
LSM1-201ENST00000311351 ATXN8Q156A1 80 aa8.65□□□□□ -1.02
LSM1-201ENST00000311351 ANKRD29Q8N6D5 301 aa8.65□□□□□ -1.02
LSM1-201ENST00000311351 BATFQ16520 125 aa8.64□□□□□ -1.03
LSM1-201ENST00000311351 A0A1W2PNM2 257 aa8.63□□□□□ -1.03
LSM1-201ENST00000311351 MT1HP80294 61 aa8.61□□□□□ -1.03
LSM1-201ENST00000311351 Q96NJ1 140 aa8.61□□□□□ -1.03
LSM1-201ENST00000311351 TRBV7-4A0A0J9YYF1 115 aa8.6□□□□□ -1.03
LSM1-201ENST00000311351 BAALC-AS2P0C853 105 aa8.6□□□□□ -1.03
LSM1-201ENST00000311351 NAA38Q9BRA0 125 aaKnown RBP8.6□□□□□ -1.03
LSM1-201ENST00000311351 TRBV20-1A0A075B6N2 111 aa8.59□□□□□ -1.03
LSM1-201ENST00000311351 Q75L30 129 aa8.59□□□□□ -1.03
LSM1-201ENST00000311351 RBM3P98179 157 aaKnown RBP8.58□□□□□ -1.04
LSM1-201ENST00000311351 DSCR8Q96T75 97 aa8.58□□□□□ -1.04
LSM1-201ENST00000311351 CCKP06307 115 aa8.56□□□□□ -1.04
LSM1-201ENST00000311351 SIGMAR1Q99720 223 aa8.56□□□□□ -1.04
LSM1-201ENST00000311351 KRTAP4-9Q9BYQ8 210 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms