RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 MMP24-AS1A0A0U1RRL7 71 aa7.4□□□□□ -1.23
SHROOM3-201ENST00000296043 DSPP15924 2871 aaKnown RBP7.39□□□□□ -1.23
SHROOM3-201ENST00000296043 CEP350Q5VT06 3117 aa7.39□□□□□ -1.23
SHROOM3-201ENST00000296043 TRANK1O15050 2925 aa7.39□□□□□ -1.23
SHROOM3-201ENST00000296043 PSORS1C2Q9UIG4 136 aa7.38□□□□□ -1.23
SHROOM3-201ENST00000296043 A6NN06 94 aa7.38□□□□□ -1.23
SHROOM3-201ENST00000296043 NDUFAF8A1L188 74 aa7.37□□□□□ -1.23
SHROOM3-201ENST00000296043 UBR5O95071 2799 aaPredicted RBP7.37□□□□□ -1.23
SHROOM3-201ENST00000296043 Q5W150 140 aa7.35□□□□□ -1.23
SHROOM3-201ENST00000296043 IGLV7-43P04211 117 aa7.34□□□□□ -1.23
SHROOM3-201ENST00000296043 KLK9Q2XQG4 91 aa7.34□□□□□ -1.23
SHROOM3-201ENST00000296043 IGSF10Q6WRI0 2623 aa7.34□□□□□ -1.23
SHROOM3-201ENST00000296043 ADM2Q7Z4H4 148 aa7.33□□□□□ -1.24
SHROOM3-201ENST00000296043 CFAP54Q96N23 3096 aa7.33□□□□□ -1.24
SHROOM3-201ENST00000296043 C10orf142B7Z368 130 aa7.32□□□□□ -1.24
SHROOM3-201ENST00000296043 ASB16-AS1Q495Z4 193 aa7.31□□□□□ -1.24
SHROOM3-201ENST00000296043 S4R3F8 94 aa7.31□□□□□ -1.24
SHROOM3-201ENST00000296043 H1FX-AS1Q4G0G2 97 aa7.28□□□□□ -1.24
SHROOM3-201ENST00000296043 Q8NDZ9 215 aa7.28□□□□□ -1.24
SHROOM3-201ENST00000296043 LINC00612Q8N6U2 182 aa7.27□□□□□ -1.25
SHROOM3-201ENST00000296043 RPL37P61927 97 aaKnown RBP7.27□□□□□ -1.25
SHROOM3-201ENST00000296043 SPATA8Q6RVD6 105 aa7.26□□□□□ -1.25
SHROOM3-201ENST00000296043 KRTAP25-1Q3LHN0 102 aa7.26□□□□□ -1.25
SHROOM3-201ENST00000296043 SRCAPQ6ZRS2 3230 aa7.26□□□□□ -1.25
SHROOM3-201ENST00000296043 SMR3BP02814 79 aaPredicted RBP7.26□□□□□ -1.25
SHROOM3-201ENST00000296043 A8MU10 97 aa7.26□□□□□ -1.25
SHROOM3-201ENST00000296043 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
SHROOM3-201ENST00000296043 A0A087WTM6 91 aa7.24□□□□□ -1.25
SHROOM3-201ENST00000296043 KRTAP10-11P60412 298 aa7.23□□□□□ -1.25
SHROOM3-201ENST00000296043 KMT2BQ9UMN6 2715 aaPredicted RBP7.22□□□□□ -1.25
SHROOM3-201ENST00000296043 J3QL48 77 aa7.2□□□□□ -1.26
SHROOM3-201ENST00000296043 A0A0C4DFX4 3053 aa7.2□□□□□ -1.26
SHROOM3-201ENST00000296043 K7EIL1 84 aa7.19□□□□□ -1.26
SHROOM3-201ENST00000296043 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.19□□□□□ -1.26
SHROOM3-201ENST00000296043 LINC00472Q9H8W2 130 aa7.18□□□□□ -1.26
SHROOM3-201ENST00000296043 DNAH12Q6ZR08 3092 aa7.14□□□□□ -1.27
SHROOM3-201ENST00000296043 Q6ZSA8 131 aa7.13□□□□□ -1.27
SHROOM3-201ENST00000296043 R4GN34 69 aa7.12□□□□□ -1.27
SHROOM3-201ENST00000296043 Q6ZR54 194 aa7.12□□□□□ -1.27
SHROOM3-201ENST00000296043 CHD9Q3L8U1 2897 aa7.1□□□□□ -1.27
SHROOM3-201ENST00000296043 KRTAP24-1Q3LI83 254 aa7.1□□□□□ -1.27
SHROOM3-201ENST00000296043 PLAC4Q8WY50 150 aa7.09□□□□□ -1.27
SHROOM3-201ENST00000296043 KRTAP26-1Q6PEX3 210 aa7.09□□□□□ -1.27
SHROOM3-201ENST00000296043 M0QZ58 72 aa7.08□□□□□ -1.28
SHROOM3-201ENST00000296043 HIVEP1P15822 2718 aa7.06□□□□□ -1.28
SHROOM3-201ENST00000296043 SEC61BP60468 96 aaKnown RBP7.06□□□□□ -1.28
SHROOM3-201ENST00000296043 C20orf166-AS1Q96NR2 134 aa7.04□□□□□ -1.28
SHROOM3-201ENST00000296043 PCNTO95613 3336 aa7.04□□□□□ -1.28
SHROOM3-201ENST00000296043 LAMA2P24043 3122 aaKnown RBP7.04□□□□□ -1.28
SHROOM3-201ENST00000296043 KRTAP10-3P60369 221 aa7.03□□□□□ -1.28
SHROOM3-201ENST00000296043 SPRR1AP35321 89 aa7.02□□□□□ -1.29
SHROOM3-201ENST00000296043 A8MUU9 505 aa7.02□□□□□ -1.29
SHROOM3-201ENST00000296043 ASH1LQ9NR48 2969 aaKnown RBP7□□□□□ -1.29
SHROOM3-201ENST00000296043 M0R2T5 61 aa6.99□□□□□ -1.29
SHROOM3-201ENST00000296043 PANO1I0J062 215 aa6.99□□□□□ -1.29
SHROOM3-201ENST00000296043 KRTAP29-1A8MX34 341 aaPredicted RBP6.99□□□□□ -1.29
SHROOM3-201ENST00000296043 CHD7Q9P2D1 2997 aa6.98□□□□□ -1.29
SHROOM3-201ENST00000296043 FLNCQ14315 2725 aa6.96□□□□□ -1.3
SHROOM3-201ENST00000296043 WWC2-AS2Q96NR7 200 aa6.95□□□□□ -1.3
SHROOM3-201ENST00000296043 KALRNO60229 2985 aa6.95□□□□□ -1.3
SHROOM3-201ENST00000296043 TNP2Q05952 138 aa6.94□□□□□ -1.3
SHROOM3-201ENST00000296043 C5orf42Q9H799 3197 aa6.94□□□□□ -1.3
SHROOM3-201ENST00000296043 C10orf95Q9H7T3 257 aa6.93□□□□□ -1.3
SHROOM3-201ENST00000296043 SPRR1BP22528 89 aa6.92□□□□□ -1.3
SHROOM3-201ENST00000296043 TRIOO75962 3097 aa6.91□□□□□ -1.3
SHROOM3-201ENST00000296043 FRYQ5TBA9 3013 aa6.91□□□□□ -1.3
SHROOM3-201ENST00000296043 MGAQ8IWI9 3026 aa6.9□□□□□ -1.31
SHROOM3-201ENST00000296043 A0A087X002 238 aa6.9□□□□□ -1.31
SHROOM3-201ENST00000296043 NOTCH2NLQ7Z3S9 236 aa6.9□□□□□ -1.31
SHROOM3-201ENST00000296043 NBEAQ8NFP9 2946 aa6.89□□□□□ -1.31
SHROOM3-201ENST00000296043 EP400Q96L91 3159 aa6.89□□□□□ -1.31
SHROOM3-201ENST00000296043 CELSR2Q9HCU4 2923 aa6.88□□□□□ -1.31
SHROOM3-201ENST00000296043 LCE6AA0A183 80 aa6.86□□□□□ -1.31
SHROOM3-201ENST00000296043 KRTAP4-16G5E9R7 235 aaPredicted RBP6.86□□□□□ -1.31
SHROOM3-201ENST00000296043 NF1P21359 2839 aa6.85□□□□□ -1.31
SHROOM3-201ENST00000296043 FREM2Q5SZK8 3169 aa6.84□□□□□ -1.31
SHROOM3-201ENST00000296043 KRTAP11-1Q8IUC1 163 aa6.83□□□□□ -1.32
SHROOM3-201ENST00000296043 PLAC8Q9NZF1 115 aa6.83□□□□□ -1.32
SHROOM3-201ENST00000296043 SRRM2Q9UQ35 2752 aaKnown RBP6.83□□□□□ -1.32
SHROOM3-201ENST00000296043 PRUNE2Q8WUY3 3088 aa6.83□□□□□ -1.32
SHROOM3-201ENST00000296043 TGP01266 2768 aa6.82□□□□□ -1.32
SHROOM3-201ENST00000296043 TENM3Q9P273 2699 aa6.81□□□□□ -1.32
SHROOM3-201ENST00000296043 TACC2O95359 2948 aa6.81□□□□□ -1.32
SHROOM3-201ENST00000296043 PDZD2O15018 2839 aa6.81□□□□□ -1.32
SHROOM3-201ENST00000296043 TENM1Q9UKZ4 2725 aa6.79□□□□□ -1.32
SHROOM3-201ENST00000296043 NIPBLQ6KC79 2804 aaeCLIP6.77□□□□□ -1.33
SHROOM3-201ENST00000296043 FRYLO94915 3013 aa6.77□□□□□ -1.33
SHROOM3-201ENST00000296043 CRYBG3Q68DQ2 2970 aa6.74□□□□□ -1.33
SHROOM3-201ENST00000296043 KRTAP1-5Q9BYS1 174 aa6.74□□□□□ -1.33
SHROOM3-201ENST00000296043 GOLGB1Q14789 3259 aaKnown RBP6.72□□□□□ -1.33
SHROOM3-201ENST00000296043 COL12A1Q99715 3063 aa6.71□□□□□ -1.34
SHROOM3-201ENST00000296043 DMXL2Q8TDJ6 3036 aa6.68□□□□□ -1.34
SHROOM3-201ENST00000296043 KRTAP1-3Q8IUG1 177 aa6.62□□□□□ -1.35
SHROOM3-201ENST00000296043 KRTAP1-1Q07627 177 aa6.61□□□□□ -1.35
SHROOM3-201ENST00000296043 P0C880 135 aa6.61□□□□□ -1.35
SHROOM3-201ENST00000296043 H0YAA0 97 aa6.6□□□□□ -1.35
SHROOM3-201ENST00000296043 VPS13AQ96RL7 3174 aa6.59□□□□□ -1.35
SHROOM3-201ENST00000296043 KRTAP10-1P60331 282 aa6.59□□□□□ -1.35
SHROOM3-201ENST00000296043 UTRNP46939 3433 aa6.58□□□□□ -1.36
SHROOM3-201ENST00000296043 ZANQ9Y493 2812 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms