RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 Q8NDZ9 215 aa7.14□□□□□ -1.27
USP53-201ENST00000274030 UNC79Q9P2D8 2635 aa7.14□□□□□ -1.27
USP53-201ENST00000274030 GCN1Q92616 2671 aaKnown RBP7.13□□□□□ -1.27
USP53-201ENST00000274030 IGLV7-46A0A075B6I9 117 aa7.13□□□□□ -1.27
USP53-201ENST00000274030 FREM2Q5SZK8 3169 aa7.12□□□□□ -1.27
USP53-201ENST00000274030 TRIOO75962 3097 aa7.11□□□□□ -1.27
USP53-201ENST00000274030 KTN1-AS1Q86SY8 53 aa7.11□□□□□ -1.27
USP53-201ENST00000274030 HRES1P13985 223 aa7.1□□□□□ -1.27
USP53-201ENST00000274030 CD164Q04900 197 aa7.09□□□□□ -1.27
USP53-201ENST00000274030 DSPP15924 2871 aaKnown RBP7.08□□□□□ -1.28
USP53-201ENST00000274030 CDH23Q9H251 3354 aa7.08□□□□□ -1.28
USP53-201ENST00000274030 LCA10Q71F78 164 aa7.07□□□□□ -1.28
USP53-201ENST00000274030 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
USP53-201ENST00000274030 NBEAL2Q6ZNJ1 2754 aa7.07□□□□□ -1.28
USP53-201ENST00000274030 ZNF292O60281 2723 aa7.05□□□□□ -1.28
USP53-201ENST00000274030 M0R2T5 61 aa7.05□□□□□ -1.28
USP53-201ENST00000274030 CAMK2N1Q7Z7J9 78 aa7.04□□□□□ -1.28
USP53-201ENST00000274030 MMP24-AS1A0A0U1RRL7 71 aa7.04□□□□□ -1.28
USP53-201ENST00000274030 A0A1B0GU33 70 aa7.04□□□□□ -1.28
USP53-201ENST00000274030 VPS13AQ96RL7 3174 aa7.03□□□□□ -1.28
USP53-201ENST00000274030 FRYQ5TBA9 3013 aa7.03□□□□□ -1.28
USP53-201ENST00000274030 PLAC8Q9NZF1 115 aa7.02□□□□□ -1.29
USP53-201ENST00000274030 UBR5O95071 2799 aaPredicted RBP7.02□□□□□ -1.29
USP53-201ENST00000274030 KRTAP1-5Q9BYS1 174 aa7.02□□□□□ -1.29
USP53-201ENST00000274030 WIPF1O43516 503 aa7.02□□□□□ -1.29
USP53-201ENST00000274030 Q1T7F1 81 aa7.01□□□□□ -1.29
USP53-201ENST00000274030 FAM229BQ4G0N7 80 aa7□□□□□ -1.29
USP53-201ENST00000274030 STAB2Q8WWQ8 2551 aa7□□□□□ -1.29
USP53-201ENST00000274030 SPRR1AP35321 89 aa7□□□□□ -1.29
USP53-201ENST00000274030 CYSTM1Q9H1C7 97 aa6.99□□□□□ -1.29
USP53-201ENST00000274030 BAHCC1Q9P281 2608 aa6.99□□□□□ -1.29
USP53-201ENST00000274030 ZCCHC13Q8WW36 166 aaKnown RBP6.99□□□□□ -1.29
USP53-201ENST00000274030 TRANK1O15050 2925 aa6.99□□□□□ -1.29
USP53-201ENST00000274030 CELSR3Q9NYQ7 3312 aa6.99□□□□□ -1.29
USP53-201ENST00000274030 Q5W150 140 aa6.95□□□□□ -1.3
USP53-201ENST00000274030 LUZP6Q538Z0 58 aa6.94□□□□□ -1.3
USP53-201ENST00000274030 LINC00472Q9H8W2 130 aa6.94□□□□□ -1.3
USP53-201ENST00000274030 DMBT1Q9UGM3 2413 aaPredicted RBP6.94□□□□□ -1.3
USP53-201ENST00000274030 SPINK7P58062 85 aa6.93□□□□□ -1.3
USP53-201ENST00000274030 CSAG1Q6PB30 78 aa6.92□□□□□ -1.3
USP53-201ENST00000274030 REV3LO60673 3130 aa6.92□□□□□ -1.3
USP53-201ENST00000274030 Q75L30 129 aa6.92□□□□□ -1.3
USP53-201ENST00000274030 S4R3F8 94 aa6.91□□□□□ -1.3
USP53-201ENST00000274030 DMXL2Q8TDJ6 3036 aa6.91□□□□□ -1.3
USP53-201ENST00000274030 KRTAP10-2P60368 255 aa6.91□□□□□ -1.3
USP53-201ENST00000274030 PRAC1Q96KF2 57 aa6.91□□□□□ -1.3
USP53-201ENST00000274030 NSD1Q96L73 2696 aaPredicted RBP6.9□□□□□ -1.3
USP53-201ENST00000274030 KRTAP10-1P60331 282 aa6.9□□□□□ -1.31
USP53-201ENST00000274030 KRTAP26-1Q6PEX3 210 aa6.9□□□□□ -1.31
USP53-201ENST00000274030 TACC2O95359 2948 aa6.9□□□□□ -1.31
USP53-201ENST00000274030 LINC01558Q9Y6Z2 57 aa6.89□□□□□ -1.31
USP53-201ENST00000274030 SZT2Q5T011 3432 aa6.89□□□□□ -1.31
USP53-201ENST00000274030 SPRR1BP22528 89 aa6.89□□□□□ -1.31
USP53-201ENST00000274030 FP248Q71RG6 208 aaPredicted RBP6.89□□□□□ -1.31
USP53-201ENST00000274030 IGSF10Q6WRI0 2623 aa6.89□□□□□ -1.31
USP53-201ENST00000274030 Q5VSD8 79 aa6.87□□□□□ -1.31
USP53-201ENST00000274030 VCANP13611 3396 aa6.87□□□□□ -1.31
USP53-201ENST00000274030 Q5XG85 94 aa6.87□□□□□ -1.31
USP53-201ENST00000274030 DNAH14Q0VDD8 3507 aa6.86□□□□□ -1.31
USP53-201ENST00000274030 PANO1I0J062 215 aa6.86□□□□□ -1.31
USP53-201ENST00000274030 DMAC1Q96GE9 116 aa6.84□□□□□ -1.31
USP53-201ENST00000274030 R4GN34 69 aa6.84□□□□□ -1.31
USP53-201ENST00000274030 KALRNO60229 2985 aa6.84□□□□□ -1.31
USP53-201ENST00000274030 Q5VV11 94 aa6.83□□□□□ -1.32
USP53-201ENST00000274030 LINC00483Q53H64 154 aa6.82□□□□□ -1.32
USP53-201ENST00000274030 ITPR1Q14643 2758 aa6.81□□□□□ -1.32
USP53-201ENST00000274030 ASH1LQ9NR48 2969 aaKnown RBP6.81□□□□□ -1.32
USP53-201ENST00000274030 ZFHX3Q15911 3703 aa6.79□□□□□ -1.32
USP53-201ENST00000274030 LAMA1P25391 3075 aa6.78□□□□□ -1.32
USP53-201ENST00000274030 ATMQ13315 3056 aa6.78□□□□□ -1.32
USP53-201ENST00000274030 LCE6AA0A183 80 aa6.78□□□□□ -1.32
USP53-201ENST00000274030 SEC61BP60468 96 aaKnown RBP6.77□□□□□ -1.33
USP53-201ENST00000274030 ITPR2Q14571 2701 aa6.77□□□□□ -1.33
USP53-201ENST00000274030 SPEGQ15772 3267 aa6.76□□□□□ -1.33
USP53-201ENST00000274030 COL12A1Q99715 3063 aa6.75□□□□□ -1.33
USP53-201ENST00000274030 BOD1L1Q8NFC6 3051 aa6.75□□□□□ -1.33
USP53-201ENST00000274030 A0A087X002 238 aa6.75□□□□□ -1.33
USP53-201ENST00000274030 OXTP01178 125 aa6.74□□□□□ -1.33
USP53-201ENST00000274030 FRYLO94915 3013 aa6.74□□□□□ -1.33
USP53-201ENST00000274030 NBEAQ8NFP9 2946 aa6.73□□□□□ -1.33
USP53-201ENST00000274030 KRTAP4-16G5E9R7 235 aaPredicted RBP6.73□□□□□ -1.33
USP53-201ENST00000274030 M0QZ58 72 aa6.72□□□□□ -1.33
USP53-201ENST00000274030 FLNCQ14315 2725 aa6.71□□□□□ -1.34
USP53-201ENST00000274030 RPL37P61927 97 aaKnown RBP6.7□□□□□ -1.34
USP53-201ENST00000274030 NOTCH2NLQ7Z3S9 236 aa6.7□□□□□ -1.34
USP53-201ENST00000274030 KMT2BQ9UMN6 2715 aaPredicted RBP6.7□□□□□ -1.34
USP53-201ENST00000274030 UTP20O75691 2785 aaKnown RBP6.7□□□□□ -1.34
USP53-201ENST00000274030 SPATA8Q6RVD6 105 aa6.7□□□□□ -1.34
USP53-201ENST00000274030 Q6ZR54 194 aa6.69□□□□□ -1.34
USP53-201ENST00000274030 CRYBG3Q68DQ2 2970 aa6.69□□□□□ -1.34
USP53-201ENST00000274030 CFAP47Q6ZTR5 3102 aa6.69□□□□□ -1.34
USP53-201ENST00000274030 HIVEP1P15822 2718 aa6.69□□□□□ -1.34
USP53-201ENST00000274030 ADGRG4Q8IZF6 3080 aa6.68□□□□□ -1.34
USP53-201ENST00000274030 COL6A3P12111 3177 aa6.68□□□□□ -1.34
USP53-201ENST00000274030 KRTAP11-1Q8IUC1 163 aa6.68□□□□□ -1.34
USP53-201ENST00000274030 EYSQ5T1H1 3165 aa6.67□□□□□ -1.34
USP53-201ENST00000274030 H1FX-AS1Q4G0G2 97 aa6.66□□□□□ -1.34
USP53-201ENST00000274030 KRTAP29-1A8MX34 341 aaPredicted RBP6.65□□□□□ -1.34
USP53-201ENST00000274030 ADM2Q7Z4H4 148 aa6.65□□□□□ -1.34
USP53-201ENST00000274030 LRBAP50851 2863 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 192.9 ms