RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 CELSR3Q9NYQ7 3312 aa5.15□□□□□ -1.59
USP3-201ENST00000268049 COL12A1Q99715 3063 aa5.14□□□□□ -1.59
USP3-201ENST00000268049 A8MWP4 228 aa5.14□□□□□ -1.59
USP3-201ENST00000268049 CNBPP62633 177 aaKnown RBP5.14□□□□□ -1.59
USP3-201ENST00000268049 Q6ZRX8 168 aa5.14□□□□□ -1.59
USP3-201ENST00000268049 DNAH14Q0VDD8 3507 aa5.13□□□□□ -1.59
USP3-201ENST00000268049 ST20-AS1Q8NBB2 130 aa5.13□□□□□ -1.59
USP3-201ENST00000268049 ITPR2Q14571 2701 aa5.13□□□□□ -1.59
USP3-201ENST00000268049 GIG44P09565 113 aaPredicted RBP5.13□□□□□ -1.59
USP3-201ENST00000268049 SPANXA2-OT1Q8N9U9 137 aa5.12□□□□□ -1.59
USP3-201ENST00000268049 BOD1L1Q8NFC6 3051 aa5.12□□□□□ -1.59
USP3-201ENST00000268049 FREM2Q5SZK8 3169 aa5.12□□□□□ -1.59
USP3-201ENST00000268049 C9orf92A6NGG3 77 aa5.12□□□□□ -1.59
USP3-201ENST00000268049 KALRNO60229 2985 aa5.11□□□□□ -1.59
USP3-201ENST00000268049 IGLV6-57P01721 117 aa5.1□□□□□ -1.59
USP3-201ENST00000268049 MRPL34Q9BQ48 92 aaKnown RBP5.09□□□□□ -1.59
USP3-201ENST00000268049 EIF4EBP3O60516 100 aaPredicted RBP5.09□□□□□ -1.59
USP3-201ENST00000268049 FP248Q71RG6 208 aaPredicted RBP5.09□□□□□ -1.59
USP3-201ENST00000268049 ITPR1Q14643 2758 aa5.09□□□□□ -1.59
USP3-201ENST00000268049 HIVEP1P15822 2718 aa5.09□□□□□ -1.59
USP3-201ENST00000268049 FAM229BQ4G0N7 80 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 NBEAQ8NFP9 2946 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 USP34Q70CQ2 3546 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 TLX1NBP0CAT3 122 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 Q75L30 129 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 LINC00612Q8N6U2 182 aa5.08□□□□□ -1.6
USP3-201ENST00000268049 UBR5O95071 2799 aaPredicted RBP5.07□□□□□ -1.6
USP3-201ENST00000268049 C9orf129Q5T035 196 aaKnown RBP5.06□□□□□ -1.6
USP3-201ENST00000268049 PRAC1Q96KF2 57 aa5.06□□□□□ -1.6
USP3-201ENST00000268049 UTP20O75691 2785 aaKnown RBP5.06□□□□□ -1.6
USP3-201ENST00000268049 LUZP6Q538Z0 58 aa5.06□□□□□ -1.6
USP3-201ENST00000268049 APCP25054 2843 aa5.06□□□□□ -1.6
USP3-201ENST00000268049 OBSCN-AS1Q96MR7 158 aa5.04□□□□□ -1.6
USP3-201ENST00000268049 NOTCH1P46531 2555 aa5.04□□□□□ -1.6
USP3-201ENST00000268049 PRR34Q9NV39 138 aa5.04□□□□□ -1.6
USP3-201ENST00000268049 KMT2BQ9UMN6 2715 aaPredicted RBP5.04□□□□□ -1.6
USP3-201ENST00000268049 OCR1Q9BZK8 76 aa5.04□□□□□ -1.6
USP3-201ENST00000268049 HRES1P13985 223 aa5.03□□□□□ -1.6
USP3-201ENST00000268049 CYSTM1Q9H1C7 97 aa5.03□□□□□ -1.6
USP3-201ENST00000268049 C8orf17Q9NRJ1 99 aa5.03□□□□□ -1.6
USP3-201ENST00000268049 ZZEF1O43149 2961 aa5.02□□□□□ -1.61
USP3-201ENST00000268049 PRR26Q8N8Z3 221 aa5.02□□□□□ -1.61
USP3-201ENST00000268049 NBEAL1Q6ZS30 2694 aa5.02□□□□□ -1.61
USP3-201ENST00000268049 ADGRG4Q8IZF6 3080 aa5.01□□□□□ -1.61
USP3-201ENST00000268049 IGFL1Q6UW32 110 aa5.01□□□□□ -1.61
USP3-201ENST00000268049 MYO15AQ9UKN7 3530 aa5.01□□□□□ -1.61
USP3-201ENST00000268049 SPRR4Q96PI1 79 aa5□□□□□ -1.61
USP3-201ENST00000268049 TACC2O95359 2948 aa5□□□□□ -1.61
USP3-201ENST00000268049 A0A0A0MQY5 61 aa5□□□□□ -1.61
USP3-201ENST00000268049 C15orf56Q8N910 161 aa5□□□□□ -1.61
USP3-201ENST00000268049 Q8N9P0 234 aaPredicted RBP5□□□□□ -1.61
USP3-201ENST00000268049 KCNQ1DNQ9H478 68 aa4.99□□□□□ -1.61
USP3-201ENST00000268049 NSD1Q96L73 2696 aaPredicted RBP4.99□□□□□ -1.61
USP3-201ENST00000268049 Q5VV11 94 aa4.99□□□□□ -1.61
USP3-201ENST00000268049 FAM104AQ969W3 186 aa4.99□□□□□ -1.61
USP3-201ENST00000268049 PLAC8Q9NZF1 115 aa4.99□□□□□ -1.61
USP3-201ENST00000268049 FAM168BA1KXE4 195 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 Q8N377 158 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 CSAG1Q6PB30 78 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 A0A1B0GVX0 72 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 DSCR10P59022 87 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 LINC01558Q9Y6Z2 57 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 SPEGQ15772 3267 aa4.98□□□□□ -1.61
USP3-201ENST00000268049 MUC3AQ02505 3323 aa4.97□□□□□ -1.61
USP3-201ENST00000268049 CFAP47Q6ZTR5 3102 aa4.96□□□□□ -1.62
USP3-201ENST00000268049 DMAC1Q96GE9 116 aa4.95□□□□□ -1.62
USP3-201ENST00000268049 LRBAP50851 2863 aa4.95□□□□□ -1.62
USP3-201ENST00000268049 LOC400499M0QZD8 3231 aa4.95□□□□□ -1.62
USP3-201ENST00000268049 A0A1W2PNM2 257 aa4.94□□□□□ -1.62
USP3-201ENST00000268049 TENM4Q6N022 2769 aa4.94□□□□□ -1.62
USP3-201ENST00000268049 Q8N1X5 172 aa4.93□□□□□ -1.62
USP3-201ENST00000268049 A0A1W2PNN7 141 aa4.93□□□□□ -1.62
USP3-201ENST00000268049 A0A0D9SG42 100 aa4.92□□□□□ -1.62
USP3-201ENST00000268049 A0A0G2JQZ4 141 aa4.91□□□□□ -1.62
USP3-201ENST00000268049 ASH1LQ9NR48 2969 aaKnown RBP4.91□□□□□ -1.62
USP3-201ENST00000268049 SPINK7P58062 85 aa4.9□□□□□ -1.63
USP3-201ENST00000268049 CELSR2Q9HCU4 2923 aa4.89□□□□□ -1.63
USP3-201ENST00000268049 IGLV5-48A0A075B6I7 105 aa4.89□□□□□ -1.63
USP3-201ENST00000268049 CAMK2N1Q7Z7J9 78 aa4.89□□□□□ -1.63
USP3-201ENST00000268049 KRTAP16-1A8MUX0 517 aa4.88□□□□□ -1.63
USP3-201ENST00000268049 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.88□□□□□ -1.63
USP3-201ENST00000268049 DCHS1Q96JQ0 3298 aa4.88□□□□□ -1.63
USP3-201ENST00000268049 KRTAP10-1P60331 282 aa4.88□□□□□ -1.63
USP3-201ENST00000268049 A0A1B0GU33 70 aa4.87□□□□□ -1.63
USP3-201ENST00000268049 ANAPC11Q9NYG5 84 aa4.87□□□□□ -1.63
USP3-201ENST00000268049 PLAC4Q8WY50 150 aa4.87□□□□□ -1.63
USP3-201ENST00000268049 CRYBG3Q68DQ2 2970 aa4.86□□□□□ -1.63
USP3-201ENST00000268049 ZANQ9Y493 2812 aa4.86□□□□□ -1.63
USP3-201ENST00000268049 ASB16-AS1Q495Z4 193 aa4.86□□□□□ -1.63
USP3-201ENST00000268049 NIPBLQ6KC79 2804 aaeCLIP4.85□□□□□ -1.63
USP3-201ENST00000268049 HRNRQ86YZ3 2850 aaPredicted RBP4.84□□□□□ -1.64
USP3-201ENST00000268049 Q6ZR54 194 aa4.84□□□□□ -1.64
USP3-201ENST00000268049 DMDP11532 3685 aa4.82□□□□□ -1.64
USP3-201ENST00000268049 KRTAP10-2P60368 255 aa4.81□□□□□ -1.64
USP3-201ENST00000268049 NBEAL2Q6ZNJ1 2754 aa4.81□□□□□ -1.64
USP3-201ENST00000268049 S4R3F8 94 aa4.8□□□□□ -1.64
USP3-201ENST00000268049 LINC00483Q53H64 154 aa4.79□□□□□ -1.64
USP3-201ENST00000268049 LAMA5O15230 3695 aa4.78□□□□□ -1.64
USP3-201ENST00000268049 A6NN06 94 aa4.77□□□□□ -1.65
USP3-201ENST00000268049 RELNP78509 3460 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms