RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 OCR1Q9BZK8 76 aa10.49□□□□□ -0.73
PHRF1-201ENST00000264555 DMXL2Q8TDJ6 3036 aa10.48□□□□□ -0.73
PHRF1-201ENST00000264555 SETXQ7Z333 2677 aaKnown RBP10.48□□□□□ -0.73
PHRF1-201ENST00000264555 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.48□□□□□ -0.73
PHRF1-201ENST00000264555 LINC00336Q6ZUF6 198 aa10.45□□□□□ -0.74
PHRF1-201ENST00000264555 TNP2Q05952 138 aa10.45□□□□□ -0.74
PHRF1-201ENST00000264555 ATP11AUNQ6ZP68 121 aa10.45□□□□□ -0.74
PHRF1-201ENST00000264555 KALRNO60229 2985 aa10.44□□□□□ -0.74
PHRF1-201ENST00000264555 A8MUN3 132 aa10.44□□□□□ -0.74
PHRF1-201ENST00000264555 COL6A5A8TX70 2615 aa10.43□□□□□ -0.74
PHRF1-201ENST00000264555 SPANXA2-OT1Q8N9U9 137 aa10.42□□□□□ -0.74
PHRF1-201ENST00000264555 LRBAP50851 2863 aa10.41□□□□□ -0.74
PHRF1-201ENST00000264555 COL12A1Q99715 3063 aa10.41□□□□□ -0.74
PHRF1-201ENST00000264555 SMR3BP02814 79 aaPredicted RBP10.41□□□□□ -0.74
PHRF1-201ENST00000264555 CD164Q04900 197 aa10.4□□□□□ -0.75
PHRF1-201ENST00000264555 SPEGQ15772 3267 aa10.39□□□□□ -0.75
PHRF1-201ENST00000264555 NBEAL2Q6ZNJ1 2754 aa10.39□□□□□ -0.75
PHRF1-201ENST00000264555 EYSQ5T1H1 3165 aa10.39□□□□□ -0.75
PHRF1-201ENST00000264555 KRTAP1-5Q9BYS1 174 aa10.39□□□□□ -0.75
PHRF1-201ENST00000264555 FREM2Q5SZK8 3169 aa10.38□□□□□ -0.75
PHRF1-201ENST00000264555 PLAC8Q9NZF1 115 aa10.37□□□□□ -0.75
PHRF1-201ENST00000264555 STAB1Q9NY15 2570 aa10.37□□□□□ -0.75
PHRF1-201ENST00000264555 NOTCH1P46531 2555 aa10.36□□□□□ -0.75
PHRF1-201ENST00000264555 UBR5O95071 2799 aaPredicted RBP10.35□□□□□ -0.75
PHRF1-201ENST00000264555 SPRR1BP22528 89 aa10.35□□□□□ -0.75
PHRF1-201ENST00000264555 ITPR1Q14643 2758 aa10.35□□□□□ -0.75
PHRF1-201ENST00000264555 IGLV8-61A0A075B6I0 122 aa10.34□□□□□ -0.75
PHRF1-201ENST00000264555 C9orf92A6NGG3 77 aa10.31□□□□□ -0.76
PHRF1-201ENST00000264555 UQCR11O14957 56 aa10.28□□□□□ -0.76
PHRF1-201ENST00000264555 SPINT4Q6UDR6 99 aa10.27□□□□□ -0.77
PHRF1-201ENST00000264555 USP34Q70CQ2 3546 aa10.27□□□□□ -0.77
PHRF1-201ENST00000264555 UTP20O75691 2785 aaKnown RBP10.26□□□□□ -0.77
PHRF1-201ENST00000264555 FAM229BQ4G0N7 80 aa10.26□□□□□ -0.77
PHRF1-201ENST00000264555 DMXL1Q9Y485 3027 aa10.26□□□□□ -0.77
PHRF1-201ENST00000264555 MMP24-AS1A0A0U1RRL7 71 aa10.24□□□□□ -0.77
PHRF1-201ENST00000264555 KTN1-AS1Q86SY8 53 aa10.23□□□□□ -0.77
PHRF1-201ENST00000264555 TACC2O95359 2948 aa10.23□□□□□ -0.77
PHRF1-201ENST00000264555 LINC00472Q9H8W2 130 aa10.23□□□□□ -0.77
PHRF1-201ENST00000264555 KRTAP4-16G5E9R7 235 aaPredicted RBP10.23□□□□□ -0.77
PHRF1-201ENST00000264555 CYSTM1Q9H1C7 97 aa10.2□□□□□ -0.78
PHRF1-201ENST00000264555 MIR22HGQ0VDD5 57 aa10.2□□□□□ -0.78
PHRF1-201ENST00000264555 ITPR2Q14571 2701 aa10.19□□□□□ -0.78
PHRF1-201ENST00000264555 IGLV7-46A0A075B6I9 117 aa10.19□□□□□ -0.78
PHRF1-201ENST00000264555 LCA10Q71F78 164 aa10.17□□□□□ -0.78
PHRF1-201ENST00000264555 ZZEF1O43149 2961 aa10.17□□□□□ -0.78
PHRF1-201ENST00000264555 Q1T7F1 81 aa10.16□□□□□ -0.78
PHRF1-201ENST00000264555 LOC400499M0QZD8 3231 aa10.15□□□□□ -0.78
PHRF1-201ENST00000264555 PRR26Q8N8Z3 221 aa10.15□□□□□ -0.78
PHRF1-201ENST00000264555 J3QL48 77 aa10.14□□□□□ -0.79
PHRF1-201ENST00000264555 APCP25054 2843 aa10.12□□□□□ -0.79
PHRF1-201ENST00000264555 MYO15AQ9UKN7 3530 aa10.12□□□□□ -0.79
PHRF1-201ENST00000264555 NBEAL1Q6ZS30 2694 aa10.12□□□□□ -0.79
PHRF1-201ENST00000264555 BAHCC1Q9P281 2608 aa10.11□□□□□ -0.79
PHRF1-201ENST00000264555 Q8N1X5 172 aa10.1□□□□□ -0.79
PHRF1-201ENST00000264555 HRNRQ86YZ3 2850 aaPredicted RBP10.1□□□□□ -0.79
PHRF1-201ENST00000264555 LINC00483Q53H64 154 aa10.09□□□□□ -0.79
PHRF1-201ENST00000264555 CDC42SE1Q9NRR8 79 aa10.09□□□□□ -0.79
PHRF1-201ENST00000264555 HRES1P13985 223 aa10.08□□□□□ -0.8
PHRF1-201ENST00000264555 PANO1I0J062 215 aa10.07□□□□□ -0.8
PHRF1-201ENST00000264555 NSD1Q96L73 2696 aaPredicted RBP10.07□□□□□ -0.8
PHRF1-201ENST00000264555 CRIPTQ9P021 101 aa10.05□□□□□ -0.8
PHRF1-201ENST00000264555 Q6ZR54 194 aa10.05□□□□□ -0.8
PHRF1-201ENST00000264555 HIVEP1P15822 2718 aa10.04□□□□□ -0.8
PHRF1-201ENST00000264555 CFAP47Q6ZTR5 3102 aa10.04□□□□□ -0.8
PHRF1-201ENST00000264555 ZANQ9Y493 2812 aa10.04□□□□□ -0.8
PHRF1-201ENST00000264555 KRTAP10-2P60368 255 aa10.02□□□□□ -0.81
PHRF1-201ENST00000264555 Q5XG85 94 aa10.02□□□□□ -0.81
PHRF1-201ENST00000264555 KRTAP10-1P60331 282 aa10.01□□□□□ -0.81
PHRF1-201ENST00000264555 Q8N9P0 234 aaPredicted RBP10□□□□□ -0.81
PHRF1-201ENST00000264555 FP248Q71RG6 208 aaPredicted RBP9.99□□□□□ -0.81
PHRF1-201ENST00000264555 KMT2BQ9UMN6 2715 aaPredicted RBP9.99□□□□□ -0.81
PHRF1-201ENST00000264555 ZCCHC13Q8WW36 166 aaKnown RBP9.98□□□□□ -0.81
PHRF1-201ENST00000264555 KRTAP7-1Q8IUC3 87 aa9.97□□□□□ -0.81
PHRF1-201ENST00000264555 Q5W150 140 aa9.96□□□□□ -0.81
PHRF1-201ENST00000264555 RBM12B-AS1Q9P1G2 102 aa9.96□□□□□ -0.82
PHRF1-201ENST00000264555 Q6ZRN7 208 aaPredicted RBP9.95□□□□□ -0.82
PHRF1-201ENST00000264555 Q75L30 129 aa9.94□□□□□ -0.82
PHRF1-201ENST00000264555 KRTAP29-1A8MX34 341 aaPredicted RBP9.93□□□□□ -0.82
PHRF1-201ENST00000264555 LINC01558Q9Y6Z2 57 aa9.93□□□□□ -0.82
PHRF1-201ENST00000264555 NIPBLQ6KC79 2804 aaeCLIP9.92□□□□□ -0.82
PHRF1-201ENST00000264555 COX6B2Q6YFQ2 88 aa9.91□□□□□ -0.82
PHRF1-201ENST00000264555 KRTAP11-1Q8IUC1 163 aa9.91□□□□□ -0.82
PHRF1-201ENST00000264555 ASH1LQ9NR48 2969 aaKnown RBP9.91□□□□□ -0.82
PHRF1-201ENST00000264555 LCE6AA0A183 80 aa9.9□□□□□ -0.82
PHRF1-201ENST00000264555 OXTP01178 125 aa9.88□□□□□ -0.83
PHRF1-201ENST00000264555 CELSR2Q9HCU4 2923 aa9.83□□□□□ -0.84
PHRF1-201ENST00000264555 Q6ZSA8 131 aa9.82□□□□□ -0.84
PHRF1-201ENST00000264555 STAB2Q8WWQ8 2551 aa9.81□□□□□ -0.84
PHRF1-201ENST00000264555 Q5VV11 94 aa9.8□□□□□ -0.84
PHRF1-201ENST00000264555 A0A087X002 238 aa9.8□□□□□ -0.84
PHRF1-201ENST00000264555 KRTAP13-1Q8IUC0 172 aa9.78□□□□□ -0.84
PHRF1-201ENST00000264555 A0A1B0GU33 70 aa9.78□□□□□ -0.84
PHRF1-201ENST00000264555 SPINK7P58062 85 aa9.77□□□□□ -0.85
PHRF1-201ENST00000264555 A0A0D9SG42 100 aa9.75□□□□□ -0.85
PHRF1-201ENST00000264555 DCHS2Q6V1P9 2916 aa9.75□□□□□ -0.85
PHRF1-201ENST00000264555 CRYBG3Q68DQ2 2970 aa9.75□□□□□ -0.85
PHRF1-201ENST00000264555 ASB16-AS1Q495Z4 193 aa9.74□□□□□ -0.85
PHRF1-201ENST00000264555 DMAC1Q96GE9 116 aa9.74□□□□□ -0.85
PHRF1-201ENST00000264555 FBN2P35556 2912 aa9.74□□□□□ -0.85
PHRF1-201ENST00000264555 NF1P21359 2839 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms