RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 STAB1Q9NY15 2570 aa10.5□□□□□ -0.73
GPC1-201ENST00000264039 IGHV6-1A0A0B4J1U7 121 aa10.49□□□□□ -0.73
GPC1-201ENST00000264039 UBE2DNLQ8IWF7 75 aa10.49□□□□□ -0.73
GPC1-201ENST00000264039 Q8N9P0 234 aaPredicted RBP10.49□□□□□ -0.73
GPC1-201ENST00000264039 PKD1L1Q8TDX9 2849 aa10.48□□□□□ -0.73
GPC1-201ENST00000264039 IGLV1-50A0A075B6I6 118 aa10.47□□□□□ -0.73
GPC1-201ENST00000264039 CASC10Q5T4H9 136 aa10.47□□□□□ -0.73
GPC1-201ENST00000264039 INAFM1C9JVW0 142 aa10.46□□□□□ -0.74
GPC1-201ENST00000264039 ATP11AUNQ6ZP68 121 aa10.45□□□□□ -0.74
GPC1-201ENST00000264039 CYP4F30PQ9H0H9 118 aa10.44□□□□□ -0.74
GPC1-201ENST00000264039 LOC101927531A0A1B0GV80 90 aa10.44□□□□□ -0.74
GPC1-201ENST00000264039 KRTAP10-3P60369 221 aa10.42□□□□□ -0.74
GPC1-201ENST00000264039 RETNLBQ9BQ08 111 aa10.42□□□□□ -0.74
GPC1-201ENST00000264039 A0A1B0GW54 56 aa10.41□□□□□ -0.74
GPC1-201ENST00000264039 LINC00588Q9Y4M8 146 aa10.4□□□□□ -0.74
GPC1-201ENST00000264039 CHTF8P0CG12 524 aa10.39□□□□□ -0.75
GPC1-201ENST00000264039 PRAC1Q96KF2 57 aa10.38□□□□□ -0.75
GPC1-201ENST00000264039 ZCCHC13Q8WW36 166 aaKnown RBP10.38□□□□□ -0.75
GPC1-201ENST00000264039 LCA10Q71F78 164 aa10.37□□□□□ -0.75
GPC1-201ENST00000264039 LINC01556Q5JQF7 62 aa10.37□□□□□ -0.75
GPC1-201ENST00000264039 SPRR4Q96PI1 79 aa10.37□□□□□ -0.75
GPC1-201ENST00000264039 PHF5AQ7RTV0 110 aaKnown RBP10.35□□□□□ -0.75
GPC1-201ENST00000264039 C7orf65Q6ZTY9 151 aa10.34□□□□□ -0.75
GPC1-201ENST00000264039 PRR26Q8N8Z3 221 aa10.34□□□□□ -0.75
GPC1-201ENST00000264039 A8MWP4 228 aa10.34□□□□□ -0.75
GPC1-201ENST00000264039 TENM1Q9UKZ4 2725 aa10.31□□□□□ -0.76
GPC1-201ENST00000264039 SPINK7P58062 85 aa10.31□□□□□ -0.76
GPC1-201ENST00000264039 MDFIQ99750 246 aa10.31□□□□□ -0.76
GPC1-201ENST00000264039 TENM3Q9P273 2699 aa10.3□□□□□ -0.76
GPC1-201ENST00000264039 CDC42SE1Q9NRR8 79 aa10.3□□□□□ -0.76
GPC1-201ENST00000264039 IGLV8-61A0A075B6I0 122 aa10.3□□□□□ -0.76
GPC1-201ENST00000264039 SRRM2Q9UQ35 2752 aaKnown RBP10.29□□□□□ -0.76
GPC1-201ENST00000264039 H3BPC8 53 aa10.29□□□□□ -0.76
GPC1-201ENST00000264039 CNBPP62633 177 aaKnown RBP10.28□□□□□ -0.76
GPC1-201ENST00000264039 SPANXA2-OT1Q8N9U9 137 aa10.28□□□□□ -0.76
GPC1-201ENST00000264039 KRTAP1-3Q8IUG1 177 aa10.27□□□□□ -0.77
GPC1-201ENST00000264039 TNP2Q05952 138 aa10.26□□□□□ -0.77
GPC1-201ENST00000264039 MOBPQ13875 183 aa10.25□□□□□ -0.77
GPC1-201ENST00000264039 Q75L30 129 aa10.25□□□□□ -0.77
GPC1-201ENST00000264039 KRTAP26-1Q6PEX3 210 aa10.24□□□□□ -0.77
GPC1-201ENST00000264039 STAB2Q8WWQ8 2551 aa10.22□□□□□ -0.77
GPC1-201ENST00000264039 FBN1P35555 2871 aaKnown RBP10.22□□□□□ -0.77
GPC1-201ENST00000264039 SPINK1P00995 79 aa10.21□□□□□ -0.77
GPC1-201ENST00000264039 LCE6AA0A183 80 aa10.21□□□□□ -0.77
GPC1-201ENST00000264039 A0A1B0GU69 56 aa10.19□□□□□ -0.78
GPC1-201ENST00000264039 C4orf48Q5BLP8 95 aa10.19□□□□□ -0.78
GPC1-201ENST00000264039 ANAPC11Q9NYG5 84 aa10.19□□□□□ -0.78
GPC1-201ENST00000264039 IGLV7-46A0A075B6I9 117 aa10.18□□□□□ -0.78
GPC1-201ENST00000264039 DMBT1Q9UGM3 2413 aaPredicted RBP10.18□□□□□ -0.78
GPC1-201ENST00000264039 LINC00313P59037 77 aa10.17□□□□□ -0.78
GPC1-201ENST00000264039 FLG2Q5D862 2391 aaPredicted RBP10.17□□□□□ -0.78
GPC1-201ENST00000264039 SPRR1AP35321 89 aa10.16□□□□□ -0.78
GPC1-201ENST00000264039 TP53AIP1Q9HCN2 124 aa10.16□□□□□ -0.78
GPC1-201ENST00000264039 KRTAP4-16G5E9R7 235 aaPredicted RBP10.15□□□□□ -0.78
GPC1-201ENST00000264039 DNAH10OSP0CZ25 163 aa10.15□□□□□ -0.78
GPC1-201ENST00000264039 CIRBP-AS1Q8TBR5 109 aa10.15□□□□□ -0.78
GPC1-201ENST00000264039 H3BNG1 76 aa10.14□□□□□ -0.79
GPC1-201ENST00000264039 C8orf17Q9NRJ1 99 aa10.14□□□□□ -0.79
GPC1-201ENST00000264039 TLX1NBP0CAT3 122 aa10.14□□□□□ -0.79
GPC1-201ENST00000264039 KRTAP1-1Q07627 177 aa10.14□□□□□ -0.79
GPC1-201ENST00000264039 ADM2Q7Z4H4 148 aa10.13□□□□□ -0.79
GPC1-201ENST00000264039 HRES1P13985 223 aa10.13□□□□□ -0.79
GPC1-201ENST00000264039 KRTAP29-1A8MX34 341 aaPredicted RBP10.12□□□□□ -0.79
GPC1-201ENST00000264039 J3QKU1 62 aa10.12□□□□□ -0.79
GPC1-201ENST00000264039 NBPF19A0A087WUL8 3843 aa10.12□□□□□ -0.79
GPC1-201ENST00000264039 MMP24-AS1A0A0U1RRL7 71 aa10.11□□□□□ -0.79
GPC1-201ENST00000264039 A6NN06 94 aa10.11□□□□□ -0.79
GPC1-201ENST00000264039 C8orf87E5RJ46 101 aa10.11□□□□□ -0.79
GPC1-201ENST00000264039 H3BS24 57 aa10.11□□□□□ -0.79
GPC1-201ENST00000264039 PLA2G2DQ9UNK4 145 aa10.11□□□□□ -0.79
GPC1-201ENST00000264039 KRTAP7-1Q8IUC3 87 aa10.1□□□□□ -0.79
GPC1-201ENST00000264039 LINC01558Q9Y6Z2 57 aa10.1□□□□□ -0.79
GPC1-201ENST00000264039 K7EIL1 84 aa10.09□□□□□ -0.79
GPC1-201ENST00000264039 ACYP2P14621 99 aa10.09□□□□□ -0.79
GPC1-201ENST00000264039 MRPL34Q9BQ48 92 aaKnown RBP10.09□□□□□ -0.79
GPC1-201ENST00000264039 C9orf163Q8N9P6 203 aa10.08□□□□□ -0.8
GPC1-201ENST00000264039 LINC00472Q9H8W2 130 aa10.07□□□□□ -0.8
GPC1-201ENST00000264039 KRTAP10-11P60412 298 aa10.06□□□□□ -0.8
GPC1-201ENST00000264039 IGKV2D-30A0A075B6S6 120 aa10.06□□□□□ -0.8
GPC1-201ENST00000264039 IGKV2-30P06310 120 aa10.06□□□□□ -0.8
GPC1-201ENST00000264039 AKAP9Q99996 3911 aa10.05□□□□□ -0.8
GPC1-201ENST00000264039 OTOGQ6ZRI0 2925 aa10.04□□□□□ -0.8
GPC1-201ENST00000264039 IGLV5-37A0A075B6J1 123 aa10.04□□□□□ -0.8
GPC1-201ENST00000264039 TENM4Q6N022 2769 aa10.03□□□□□ -0.8
GPC1-201ENST00000264039 C14orf177Q52M58 125 aa10.03□□□□□ -0.8
GPC1-201ENST00000264039 A0A1B0GVX0 72 aa10.02□□□□□ -0.81
GPC1-201ENST00000264039 LINC01554Q52M75 96 aa10.01□□□□□ -0.81
GPC1-201ENST00000264039 KMT2BQ9UMN6 2715 aaPredicted RBP10.01□□□□□ -0.81
GPC1-201ENST00000264039 TENM2Q9NT68 2774 aa10□□□□□ -0.81
GPC1-201ENST00000264039 COL7A1Q02388 2944 aa10□□□□□ -0.81
GPC1-201ENST00000264039 MIR22HGQ0VDD5 57 aa9.99□□□□□ -0.81
GPC1-201ENST00000264039 TRRAPQ9Y4A5 3859 aa9.97□□□□□ -0.81
GPC1-201ENST00000264039 ZNF469Q96JG9 3925 aaPredicted RBP9.96□□□□□ -0.81
GPC1-201ENST00000264039 KRTAP11-1Q8IUC1 163 aa9.96□□□□□ -0.81
GPC1-201ENST00000264039 UQCR11O14957 56 aa9.95□□□□□ -0.82
GPC1-201ENST00000264039 A0A087X002 238 aa9.94□□□□□ -0.82
GPC1-201ENST00000264039 NOTCH2NLQ7Z3S9 236 aa9.94□□□□□ -0.82
GPC1-201ENST00000264039 RTL8CO15255 209 aa9.94□□□□□ -0.82
GPC1-201ENST00000264039 CSAG1Q6PB30 78 aa9.92□□□□□ -0.82
GPC1-201ENST00000264039 ZNF706Q9Y5V0 76 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms