RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 DNAH10Q8IVF4 4471 aa7.86□□□□□ -1.15
CHMP3-201ENST00000263856 PSPHP1O15172 72 aa7.85□□□□□ -1.15
CHMP3-201ENST00000263856 C1orf64Q8NEQ6 169 aa7.85□□□□□ -1.15
CHMP3-201ENST00000263856 SPRR4Q96PI1 79 aa7.85□□□□□ -1.15
CHMP3-201ENST00000263856 PLA2G2DQ9UNK4 145 aa7.85□□□□□ -1.15
CHMP3-201ENST00000263856 LYSTQ99698 3801 aa7.85□□□□□ -1.15
CHMP3-201ENST00000263856 TENM2Q9NT68 2774 aa7.84□□□□□ -1.15
CHMP3-201ENST00000263856 UBE2DNLQ8IWF7 75 aa7.84□□□□□ -1.15
CHMP3-201ENST00000263856 STAB2Q8WWQ8 2551 aa7.84□□□□□ -1.15
CHMP3-201ENST00000263856 LINC00208Q96KT6 92 aa7.84□□□□□ -1.15
CHMP3-201ENST00000263856 PHF5AQ7RTV0 110 aaKnown RBP7.83□□□□□ -1.16
CHMP3-201ENST00000263856 IGLV5-37A0A075B6J1 123 aa7.82□□□□□ -1.16
CHMP3-201ENST00000263856 MP68P56378 58 aa7.81□□□□□ -1.16
CHMP3-201ENST00000263856 COL7A1Q02388 2944 aa7.81□□□□□ -1.16
CHMP3-201ENST00000263856 KRTAP1-5Q9BYS1 174 aa7.8□□□□□ -1.16
CHMP3-201ENST00000263856 hDV103S1A0JD37 113 aa7.8□□□□□ -1.16
CHMP3-201ENST00000263856 H0Y9J4 135 aa7.79□□□□□ -1.16
CHMP3-201ENST00000263856 A0A1B0GW54 56 aa7.79□□□□□ -1.16
CHMP3-201ENST00000263856 CMYA5Q8N3K9 4069 aa7.78□□□□□ -1.16
CHMP3-201ENST00000263856 KRTAP11-1Q8IUC1 163 aa7.77□□□□□ -1.17
CHMP3-201ENST00000263856 CASC2Q6XLA1 102 aa7.77□□□□□ -1.17
CHMP3-201ENST00000263856 C16orf90A8MZG2 172 aa7.76□□□□□ -1.17
CHMP3-201ENST00000263856 H0Y9P7 68 aa7.75□□□□□ -1.17
CHMP3-201ENST00000263856 IGLV9-49A0A0B4J1Y8 123 aa7.74□□□□□ -1.17
CHMP3-201ENST00000263856 K7EIL1 84 aa7.74□□□□□ -1.17
CHMP3-201ENST00000263856 ZCCHC13Q8WW36 166 aaKnown RBP7.74□□□□□ -1.17
CHMP3-201ENST00000263856 C1orf195Q5TG92 126 aa7.73□□□□□ -1.17
CHMP3-201ENST00000263856 HUWE1Q7Z6Z7 4374 aaKnown RBP7.72□□□□□ -1.17
CHMP3-201ENST00000263856 LCE6AA0A183 80 aa7.72□□□□□ -1.17
CHMP3-201ENST00000263856 A8MUN3 132 aa7.71□□□□□ -1.18
CHMP3-201ENST00000263856 TRAV22A0A0B4J277 110 aa7.7□□□□□ -1.18
CHMP3-201ENST00000263856 DNAH9Q9NYC9 4486 aa7.7□□□□□ -1.18
CHMP3-201ENST00000263856 PCOTHQ58A44 107 aa7.7□□□□□ -1.18
CHMP3-201ENST00000263856 B9D2Q9BPU9 175 aa7.7□□□□□ -1.18
CHMP3-201ENST00000263856 DNAH1Q9P2D7 4330 aa7.7□□□□□ -1.18
CHMP3-201ENST00000263856 NDUFB1O75438 58 aa7.69□□□□□ -1.18
CHMP3-201ENST00000263856 CNBPP62633 177 aaKnown RBP7.69□□□□□ -1.18
CHMP3-201ENST00000263856 NDUFS5O43920 106 aa7.69□□□□□ -1.18
CHMP3-201ENST00000263856 PRR15Q8IV56 129 aa7.68□□□□□ -1.18
CHMP3-201ENST00000263856 PANO1I0J062 215 aa7.66□□□□□ -1.18
CHMP3-201ENST00000263856 A8MWP4 228 aa7.65□□□□□ -1.18
CHMP3-201ENST00000263856 A8MU10 97 aa7.64□□□□□ -1.19
CHMP3-201ENST00000263856 Q1T7F1 81 aa7.64□□□□□ -1.19
CHMP3-201ENST00000263856 KRTAP29-1A8MX34 341 aaPredicted RBP7.63□□□□□ -1.19
CHMP3-201ENST00000263856 CYP4F30PQ9H0H9 118 aa7.63□□□□□ -1.19
CHMP3-201ENST00000263856 IGLV8-61A0A075B6I0 122 aa7.63□□□□□ -1.19
CHMP3-201ENST00000263856 ANAPC11Q9NYG5 84 aa7.63□□□□□ -1.19
CHMP3-201ENST00000263856 PRR15LQ9BU68 103 aa7.62□□□□□ -1.19
CHMP3-201ENST00000263856 CHKB-CPT1BH3BT56 60 aa7.62□□□□□ -1.19
CHMP3-201ENST00000263856 C14orf177Q52M58 125 aa7.62□□□□□ -1.19
CHMP3-201ENST00000263856 LINC00472Q9H8W2 130 aa7.62□□□□□ -1.19
CHMP3-201ENST00000263856 IGHV6-1A0A0B4J1U7 121 aa7.61□□□□□ -1.19
CHMP3-201ENST00000263856 DNAH3Q8TD57 4116 aa7.6□□□□□ -1.19
CHMP3-201ENST00000263856 V9GYY9 64 aa7.6□□□□□ -1.19
CHMP3-201ENST00000263856 DNAH7Q8WXX0 4024 aa7.6□□□□□ -1.19
CHMP3-201ENST00000263856 C9orf163Q8N9P6 203 aa7.59□□□□□ -1.19
CHMP3-201ENST00000263856 SPTSSBQ8NFR3 76 aa7.59□□□□□ -1.2
CHMP3-201ENST00000263856 MMP24-AS1A0A0U1RRL7 71 aa7.58□□□□□ -1.2
CHMP3-201ENST00000263856 SPINK6Q6UWN8 80 aa7.58□□□□□ -1.2
CHMP3-201ENST00000263856 APLNQ9ULZ1 77 aa7.57□□□□□ -1.2
CHMP3-201ENST00000263856 CDK2AP2O75956 126 aa7.57□□□□□ -1.2
CHMP3-201ENST00000263856 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.57□□□□□ -1.2
CHMP3-201ENST00000263856 MOBPQ13875 183 aa7.56□□□□□ -1.2
CHMP3-201ENST00000263856 COA5Q86WW8 74 aa7.55□□□□□ -1.2
CHMP3-201ENST00000263856 MDFIQ99750 246 aa7.55□□□□□ -1.2
CHMP3-201ENST00000263856 SPRR1BP22528 89 aa7.54□□□□□ -1.2
CHMP3-201ENST00000263856 Q5VV11 94 aa7.54□□□□□ -1.2
CHMP3-201ENST00000263856 NBDYA0A0U1RRE5 68 aa7.54□□□□□ -1.2
CHMP3-201ENST00000263856 A6NED7 52 aa7.53□□□□□ -1.2
CHMP3-201ENST00000263856 Q8N9P0 234 aaPredicted RBP7.53□□□□□ -1.2
CHMP3-201ENST00000263856 PMAIP1Q13794 54 aa7.53□□□□□ -1.2
CHMP3-201ENST00000263856 SPAG11AQ6PDA7 123 aa7.53□□□□□ -1.2
CHMP3-201ENST00000263856 H3BPC8 53 aa7.51□□□□□ -1.21
CHMP3-201ENST00000263856 PLECQ15149 4684 aaKnown RBP7.51□□□□□ -1.21
CHMP3-201ENST00000263856 SPANXA2-OT1Q8N9U9 137 aa7.51□□□□□ -1.21
CHMP3-201ENST00000263856 C8orf17Q9NRJ1 99 aa7.51□□□□□ -1.21
CHMP3-201ENST00000263856 CD164Q04900 197 aa7.5□□□□□ -1.21
CHMP3-201ENST00000263856 A0A087X002 238 aa7.48□□□□□ -1.21
CHMP3-201ENST00000263856 NOTCH2NLQ7Z3S9 236 aa7.48□□□□□ -1.21
CHMP3-201ENST00000263856 LIMD2Q9BT23 127 aa7.48□□□□□ -1.21
CHMP3-201ENST00000263856 FRAS1Q86XX4 4008 aa7.48□□□□□ -1.21
CHMP3-201ENST00000263856 Q96NJ1 140 aa7.47□□□□□ -1.21
CHMP3-201ENST00000263856 PSORS1C2Q9UIG4 136 aa7.47□□□□□ -1.21
CHMP3-201ENST00000263856 RETNLBQ9BQ08 111 aa7.46□□□□□ -1.22
CHMP3-201ENST00000263856 CIRBP-AS1Q8TBR5 109 aa7.46□□□□□ -1.22
CHMP3-201ENST00000263856 A0A1B0GVX0 72 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 KRTAP13-1Q8IUC0 172 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 IGLV7-46A0A075B6I9 117 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 SEC61GP60059 68 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 SPACA4Q8TDM5 124 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 TGP01266 2768 aa7.45□□□□□ -1.22
CHMP3-201ENST00000263856 RTL8CO15255 209 aa7.43□□□□□ -1.22
CHMP3-201ENST00000263856 MRPL34Q9BQ48 92 aaKnown RBP7.43□□□□□ -1.22
CHMP3-201ENST00000263856 TP53AIP1Q9HCN2 124 aa7.43□□□□□ -1.22
CHMP3-201ENST00000263856 Q6ZRN7 208 aaPredicted RBP7.42□□□□□ -1.22
CHMP3-201ENST00000263856 A0A087WTM6 91 aa7.41□□□□□ -1.22
CHMP3-201ENST00000263856 WWC2-AS2Q96NR7 200 aa7.41□□□□□ -1.22
CHMP3-201ENST00000263856 ZNF706Q9Y5V0 76 aaPredicted RBP7.41□□□□□ -1.22
CHMP3-201ENST00000263856 NUPR2A6NF83 97 aa7.4□□□□□ -1.23
CHMP3-201ENST00000263856 LCA10Q71F78 164 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms