RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.9□□□□□ -0.5
UPF1-201ENST00000262803 LUZP6Q538Z0 58 aa11.9□□□□□ -0.5
UPF1-201ENST00000262803 ZCCHC13Q8WW36 166 aaKnown RBP11.89□□□□□ -0.51
UPF1-201ENST00000262803 ZNF292O60281 2723 aa11.89□□□□□ -0.51
UPF1-201ENST00000262803 CAMK2N1Q7Z7J9 78 aa11.88□□□□□ -0.51
UPF1-201ENST00000262803 Q1T7F1 81 aa11.88□□□□□ -0.51
UPF1-201ENST00000262803 SZT2Q5T011 3432 aa11.87□□□□□ -0.51
UPF1-201ENST00000262803 SPRR1BP22528 89 aa11.86□□□□□ -0.51
UPF1-201ENST00000262803 CSAG1Q6PB30 78 aa11.86□□□□□ -0.51
UPF1-201ENST00000262803 STAB1Q9NY15 2570 aa11.86□□□□□ -0.51
UPF1-201ENST00000262803 SPRR1AP35321 89 aa11.86□□□□□ -0.51
UPF1-201ENST00000262803 A0A1B0GU33 70 aa11.85□□□□□ -0.51
UPF1-201ENST00000262803 EYSQ5T1H1 3165 aa11.83□□□□□ -0.52
UPF1-201ENST00000262803 TEX15Q9BXT5 2789 aa11.83□□□□□ -0.52
UPF1-201ENST00000262803 XIRP2A4UGR9 3374 aa11.82□□□□□ -0.52
UPF1-201ENST00000262803 M0R2T5 61 aa11.82□□□□□ -0.52
UPF1-201ENST00000262803 SEC61BP60468 96 aaKnown RBP11.82□□□□□ -0.52
UPF1-201ENST00000262803 WDFY4Q6ZS81 3184 aa11.81□□□□□ -0.52
UPF1-201ENST00000262803 TEP1Q99973 2627 aaKnown RBP11.79□□□□□ -0.52
UPF1-201ENST00000262803 DMAC1Q96GE9 116 aa11.79□□□□□ -0.52
UPF1-201ENST00000262803 GCN1Q92616 2671 aaKnown RBP11.78□□□□□ -0.52
UPF1-201ENST00000262803 S4R3F8 94 aa11.78□□□□□ -0.52
UPF1-201ENST00000262803 MMP24-AS1A0A0U1RRL7 71 aa11.77□□□□□ -0.52
UPF1-201ENST00000262803 Q75L30 129 aa11.75□□□□□ -0.53
UPF1-201ENST00000262803 UNC79Q9P2D8 2635 aa11.74□□□□□ -0.53
UPF1-201ENST00000262803 MAP1AP78559 2803 aaPredicted RBP11.74□□□□□ -0.53
UPF1-201ENST00000262803 CYSTM1Q9H1C7 97 aa11.73□□□□□ -0.53
UPF1-201ENST00000262803 NBEAL1Q6ZS30 2694 aa11.71□□□□□ -0.53
UPF1-201ENST00000262803 LINC01558Q9Y6Z2 57 aa11.71□□□□□ -0.54
UPF1-201ENST00000262803 REV3LO60673 3130 aa11.7□□□□□ -0.54
UPF1-201ENST00000262803 NOTCH1P46531 2555 aa11.68□□□□□ -0.54
UPF1-201ENST00000262803 TRIOO75962 3097 aa11.67□□□□□ -0.54
UPF1-201ENST00000262803 LCE6AA0A183 80 aa11.67□□□□□ -0.54
UPF1-201ENST00000262803 COL6A5A8TX70 2615 aa11.66□□□□□ -0.54
UPF1-201ENST00000262803 VCANP13611 3396 aa11.65□□□□□ -0.54
UPF1-201ENST00000262803 FP248Q71RG6 208 aaPredicted RBP11.65□□□□□ -0.55
UPF1-201ENST00000262803 DSPP15924 2871 aaKnown RBP11.64□□□□□ -0.55
UPF1-201ENST00000262803 Q5XG85 94 aa11.63□□□□□ -0.55
UPF1-201ENST00000262803 LINC00472Q9H8W2 130 aa11.63□□□□□ -0.55
UPF1-201ENST00000262803 Q5W150 140 aa11.61□□□□□ -0.55
UPF1-201ENST00000262803 KRTAP26-1Q6PEX3 210 aa11.61□□□□□ -0.55
UPF1-201ENST00000262803 Q8N9P0 234 aaPredicted RBP11.61□□□□□ -0.55
UPF1-201ENST00000262803 SPTBN5Q9NRC6 3674 aaKnown RBP11.6□□□□□ -0.55
UPF1-201ENST00000262803 SETXQ7Z333 2677 aaKnown RBP11.6□□□□□ -0.55
UPF1-201ENST00000262803 Q5VSD8 79 aa11.58□□□□□ -0.56
UPF1-201ENST00000262803 NBEAL2Q6ZNJ1 2754 aa11.58□□□□□ -0.56
UPF1-201ENST00000262803 KRTAP1-5Q9BYS1 174 aa11.57□□□□□ -0.56
UPF1-201ENST00000262803 OXTP01178 125 aa11.57□□□□□ -0.56
UPF1-201ENST00000262803 SPINK7P58062 85 aa11.57□□□□□ -0.56
UPF1-201ENST00000262803 VPS13AQ96RL7 3174 aa11.56□□□□□ -0.56
UPF1-201ENST00000262803 COL6A3P12111 3177 aa11.54□□□□□ -0.56
UPF1-201ENST00000262803 R4GN34 69 aa11.54□□□□□ -0.56
UPF1-201ENST00000262803 FRYQ5TBA9 3013 aa11.54□□□□□ -0.56
UPF1-201ENST00000262803 H3BS24 57 aa11.52□□□□□ -0.57
UPF1-201ENST00000262803 UBR5O95071 2799 aaPredicted RBP11.51□□□□□ -0.57
UPF1-201ENST00000262803 TNRC18O15417 2968 aaPredicted RBP11.51□□□□□ -0.57
UPF1-201ENST00000262803 IGSF10Q6WRI0 2623 aa11.46□□□□□ -0.57
UPF1-201ENST00000262803 DNAH14Q0VDD8 3507 aa11.46□□□□□ -0.57
UPF1-201ENST00000262803 Q5VV11 94 aa11.43□□□□□ -0.58
UPF1-201ENST00000262803 KRTAP10-1P60331 282 aa11.42□□□□□ -0.58
UPF1-201ENST00000262803 FLG2Q5D862 2391 aaPredicted RBP11.4□□□□□ -0.58
UPF1-201ENST00000262803 KRTAP4-16G5E9R7 235 aaPredicted RBP11.37□□□□□ -0.59
UPF1-201ENST00000262803 RPL37P61927 97 aaKnown RBP11.37□□□□□ -0.59
UPF1-201ENST00000262803 RPS29P62273 56 aaKnown RBP11.35□□□□□ -0.59
UPF1-201ENST00000262803 FREM2Q5SZK8 3169 aa11.34□□□□□ -0.59
UPF1-201ENST00000262803 Q6ZR54 194 aa11.33□□□□□ -0.6
UPF1-201ENST00000262803 A0A0A0MQY5 61 aa11.32□□□□□ -0.6
UPF1-201ENST00000262803 SPEGQ15772 3267 aa11.32□□□□□ -0.6
UPF1-201ENST00000262803 LAMA1P25391 3075 aa11.31□□□□□ -0.6
UPF1-201ENST00000262803 MUC3AQ02505 3323 aa11.3□□□□□ -0.6
UPF1-201ENST00000262803 MYO15AQ9UKN7 3530 aa11.3□□□□□ -0.6
UPF1-201ENST00000262803 KRTAP10-2P60368 255 aa11.3□□□□□ -0.6
UPF1-201ENST00000262803 PRAC1Q96KF2 57 aa11.3□□□□□ -0.6
UPF1-201ENST00000262803 USP34Q70CQ2 3546 aa11.29□□□□□ -0.6
UPF1-201ENST00000262803 STAB2Q8WWQ8 2551 aa11.29□□□□□ -0.6
UPF1-201ENST00000262803 ROMO1P60602 79 aa11.28□□□□□ -0.6
UPF1-201ENST00000262803 H1FX-AS1Q4G0G2 97 aa11.28□□□□□ -0.6
UPF1-201ENST00000262803 PLAC4Q8WY50 150 aa11.28□□□□□ -0.6
UPF1-201ENST00000262803 NSD1Q96L73 2696 aaPredicted RBP11.27□□□□□ -0.61
UPF1-201ENST00000262803 PANO1I0J062 215 aa11.27□□□□□ -0.61
UPF1-201ENST00000262803 ASB16-AS1Q495Z4 193 aa11.27□□□□□ -0.61
UPF1-201ENST00000262803 M0QZ58 72 aa11.26□□□□□ -0.61
UPF1-201ENST00000262803 KALRNO60229 2985 aa11.26□□□□□ -0.61
UPF1-201ENST00000262803 CELSR3Q9NYQ7 3312 aa11.25□□□□□ -0.61
UPF1-201ENST00000262803 ITPR1Q14643 2758 aa11.25□□□□□ -0.61
UPF1-201ENST00000262803 DMBT1Q9UGM3 2413 aaPredicted RBP11.24□□□□□ -0.61
UPF1-201ENST00000262803 KRTAP29-1A8MX34 341 aaPredicted RBP11.24□□□□□ -0.61
UPF1-201ENST00000262803 FRYLO94915 3013 aa11.23□□□□□ -0.61
UPF1-201ENST00000262803 NBEAQ8NFP9 2946 aa11.21□□□□□ -0.61
UPF1-201ENST00000262803 FLNCQ14315 2725 aa11.2□□□□□ -0.62
UPF1-201ENST00000262803 TACC2O95359 2948 aa11.18□□□□□ -0.62
UPF1-201ENST00000262803 ITPR2Q14571 2701 aa11.15□□□□□ -0.62
UPF1-201ENST00000262803 ATMQ13315 3056 aa11.15□□□□□ -0.62
UPF1-201ENST00000262803 BAHCC1Q9P281 2608 aa11.12□□□□□ -0.63
UPF1-201ENST00000262803 DMXL2Q8TDJ6 3036 aa11.11□□□□□ -0.63
UPF1-201ENST00000262803 ADM2Q7Z4H4 148 aa11.1□□□□□ -0.63
UPF1-201ENST00000262803 ADGRG4Q8IZF6 3080 aa11.07□□□□□ -0.64
UPF1-201ENST00000262803 A0A087X002 238 aa11.07□□□□□ -0.64
UPF1-201ENST00000262803 KRTAP21-3Q3LHN1 58 aa11.06□□□□□ -0.64
UPF1-201ENST00000262803 DMDP11532 3685 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms