RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 MXRA5Q9NR99 2828 aa8.25□□□□□ -1.09
MSH2-201ENST00000233146 A0A087X002 238 aa8.24□□□□□ -1.09
MSH2-201ENST00000233146 IGLV1-51P01701 117 aa8.24□□□□□ -1.09
MSH2-201ENST00000233146 LINC00476Q8WZB0 136 aa8.24□□□□□ -1.09
MSH2-201ENST00000233146 BAHCC1Q9P281 2608 aa8.23□□□□□ -1.09
MSH2-201ENST00000233146 RTL8CO15255 209 aa8.22□□□□□ -1.09
MSH2-201ENST00000233146 ATRQ13535 2644 aa8.22□□□□□ -1.09
MSH2-201ENST00000233146 ZNF469Q96JG9 3925 aaPredicted RBP8.22□□□□□ -1.09
MSH2-201ENST00000233146 A0A0G2JQZ4 141 aa8.21□□□□□ -1.09
MSH2-201ENST00000233146 A0A1W2PNN7 141 aa8.21□□□□□ -1.09
MSH2-201ENST00000233146 HRES1P13985 223 aa8.21□□□□□ -1.1
MSH2-201ENST00000233146 LELP1Q5T871 98 aa8.21□□□□□ -1.1
MSH2-201ENST00000233146 MAST4O15021 2626 aa8.21□□□□□ -1.1
MSH2-201ENST00000233146 PCOTHQ58A44 107 aa8.21□□□□□ -1.1
MSH2-201ENST00000233146 F8P00451 2351 aa8.21□□□□□ -1.1
MSH2-201ENST00000233146 IGFL1Q6UW32 110 aa8.2□□□□□ -1.1
MSH2-201ENST00000233146 CCL19Q99731 98 aa8.2□□□□□ -1.1
MSH2-201ENST00000233146 SPRR1AP35321 89 aa8.2□□□□□ -1.1
MSH2-201ENST00000233146 A0A087WSZ3 146 aa8.19□□□□□ -1.1
MSH2-201ENST00000233146 NBEAL2Q6ZNJ1 2754 aa8.19□□□□□ -1.1
MSH2-201ENST00000233146 KRTAP10-9P60411 292 aa8.19□□□□□ -1.1
MSH2-201ENST00000233146 X6R8D5 127 aa8.18□□□□□ -1.1
MSH2-201ENST00000233146 C15orf56Q8N910 161 aa8.17□□□□□ -1.1
MSH2-201ENST00000233146 KRTAP26-1Q6PEX3 210 aa8.16□□□□□ -1.1
MSH2-201ENST00000233146 RPL37AP8A6NKH3 93 aa8.16□□□□□ -1.1
MSH2-201ENST00000233146 A8MWP4 228 aa8.16□□□□□ -1.1
MSH2-201ENST00000233146 RETNLBQ9BQ08 111 aa8.14□□□□□ -1.11
MSH2-201ENST00000233146 IGLV8-61A0A075B6I0 122 aa8.12□□□□□ -1.11
MSH2-201ENST00000233146 PLA2G2DQ9UNK4 145 aa8.12□□□□□ -1.11
MSH2-201ENST00000233146 KMT2BQ9UMN6 2715 aaPredicted RBP8.11□□□□□ -1.11
MSH2-201ENST00000233146 MMP24-AS1A0A0U1RRL7 71 aa8.11□□□□□ -1.11
MSH2-201ENST00000233146 LINC00472Q9H8W2 130 aa8.1□□□□□ -1.11
MSH2-201ENST00000233146 CSAG1Q6PB30 78 aa8.09□□□□□ -1.11
MSH2-201ENST00000233146 IGKV2-24A0A0C4DH68 120 aa8.09□□□□□ -1.11
MSH2-201ENST00000233146 SPATA8Q6RVD6 105 aa8.09□□□□□ -1.11
MSH2-201ENST00000233146 Q6ZR54 194 aa8.09□□□□□ -1.11
MSH2-201ENST00000233146 DEFB131BA0A096LNP1 70 aa8.08□□□□□ -1.12
MSH2-201ENST00000233146 HIVEP1P15822 2718 aa8.07□□□□□ -1.12
MSH2-201ENST00000233146 DEFB4AO15263 64 aa8.07□□□□□ -1.12
MSH2-201ENST00000233146 TP53AIP1Q9HCN2 124 aa8.07□□□□□ -1.12
MSH2-201ENST00000233146 FAM168BA1KXE4 195 aa8.06□□□□□ -1.12
MSH2-201ENST00000233146 ALMS1Q8TCU4 4167 aa8.04□□□□□ -1.12
MSH2-201ENST00000233146 KRTAP7-1Q8IUC3 87 aa8.04□□□□□ -1.12
MSH2-201ENST00000233146 TLX1NBP0CAT3 122 aa8.03□□□□□ -1.12
MSH2-201ENST00000233146 H0Y9J4 135 aa8.03□□□□□ -1.12
MSH2-201ENST00000233146 NBEAL1Q6ZS30 2694 aa8.02□□□□□ -1.13
MSH2-201ENST00000233146 J3QKU1 62 aa8.01□□□□□ -1.13
MSH2-201ENST00000233146 SMR3AQ99954 134 aa8.01□□□□□ -1.13
MSH2-201ENST00000233146 PDZD2O15018 2839 aa8.01□□□□□ -1.13
MSH2-201ENST00000233146 COL6A5A8TX70 2615 aa8.01□□□□□ -1.13
MSH2-201ENST00000233146 STAB1Q9NY15 2570 aa8.01□□□□□ -1.13
MSH2-201ENST00000233146 HTN3P15516 51 aa8□□□□□ -1.13
MSH2-201ENST00000233146 TENM2Q9NT68 2774 aa8□□□□□ -1.13
MSH2-201ENST00000233146 OXLD1Q5BKU9 147 aa8□□□□□ -1.13
MSH2-201ENST00000233146 ZNF706Q9Y5V0 76 aaPredicted RBP8□□□□□ -1.13
MSH2-201ENST00000233146 REG3GQ6UW15 175 aa7.99□□□□□ -1.13
MSH2-201ENST00000233146 C1orf134Q5TEV5 83 aa7.98□□□□□ -1.13
MSH2-201ENST00000233146 MIR22HGQ0VDD5 57 aa7.96□□□□□ -1.14
MSH2-201ENST00000233146 DEFB135Q30KP9 77 aa7.95□□□□□ -1.14
MSH2-201ENST00000233146 NOTCH1P46531 2555 aa7.94□□□□□ -1.14
MSH2-201ENST00000233146 A0A1B0GU69 56 aa7.94□□□□□ -1.14
MSH2-201ENST00000233146 MGAM2Q2M2H8 2515 aa7.94□□□□□ -1.14
MSH2-201ENST00000233146 SPART-AS1P0CW21 52 aa7.92□□□□□ -1.14
MSH2-201ENST00000233146 ACYP2P14621 99 aa7.92□□□□□ -1.14
MSH2-201ENST00000233146 UQCR11O14957 56 aa7.91□□□□□ -1.14
MSH2-201ENST00000233146 C8orf17Q9NRJ1 99 aa7.91□□□□□ -1.14
MSH2-201ENST00000233146 TENM1Q9UKZ4 2725 aa7.91□□□□□ -1.14
MSH2-201ENST00000233146 ZNF861PO60384 105 aa7.9□□□□□ -1.14
MSH2-201ENST00000233146 PRLHP81277 87 aa7.9□□□□□ -1.14
MSH2-201ENST00000233146 ROMO1P60602 79 aa7.9□□□□□ -1.15
MSH2-201ENST00000233146 FBN1P35555 2871 aaKnown RBP7.89□□□□□ -1.15
MSH2-201ENST00000233146 NSD1Q96L73 2696 aaPredicted RBP7.89□□□□□ -1.15
MSH2-201ENST00000233146 ANK3Q12955 4377 aaKnown RBP7.88□□□□□ -1.15
MSH2-201ENST00000233146 VWFP04275 2813 aa7.88□□□□□ -1.15
MSH2-201ENST00000233146 Q96NJ1 140 aa7.88□□□□□ -1.15
MSH2-201ENST00000233146 SPRR1BP22528 89 aa7.87□□□□□ -1.15
MSH2-201ENST00000233146 IGHV6-1A0A0B4J1U7 121 aa7.84□□□□□ -1.15
MSH2-201ENST00000233146 MRPL34Q9BQ48 92 aaKnown RBP7.83□□□□□ -1.16
MSH2-201ENST00000233146 DEFB113Q30KQ7 82 aa7.83□□□□□ -1.16
MSH2-201ENST00000233146 LINC01556Q5JQF7 62 aa7.83□□□□□ -1.16
MSH2-201ENST00000233146 DMAC1Q96GE9 116 aa7.82□□□□□ -1.16
MSH2-201ENST00000233146 K7EIL1 84 aa7.82□□□□□ -1.16
MSH2-201ENST00000233146 H3BNG1 76 aa7.81□□□□□ -1.16
MSH2-201ENST00000233146 SRRM2Q9UQ35 2752 aaKnown RBP7.8□□□□□ -1.16
MSH2-201ENST00000233146 TRRAPQ9Y4A5 3859 aa7.8□□□□□ -1.16
MSH2-201ENST00000233146 A0A1B0GVX0 72 aa7.8□□□□□ -1.16
MSH2-201ENST00000233146 KRTAP13-3Q3SY46 172 aa7.8□□□□□ -1.16
MSH2-201ENST00000233146 KRTAP25-1Q3LHN0 102 aa7.79□□□□□ -1.16
MSH2-201ENST00000233146 A0A096LNI7 61 aa7.77□□□□□ -1.17
MSH2-201ENST00000233146 Q5W150 140 aa7.77□□□□□ -1.17
MSH2-201ENST00000233146 CASC10Q5T4H9 136 aa7.76□□□□□ -1.17
MSH2-201ENST00000233146 PKD1L1Q8TDX9 2849 aa7.75□□□□□ -1.17
MSH2-201ENST00000233146 INAFM1C9JVW0 142 aa7.75□□□□□ -1.17
MSH2-201ENST00000233146 CSMD3Q7Z407 3707 aa7.74□□□□□ -1.17
MSH2-201ENST00000233146 NOTCH2NLQ7Z3S9 236 aa7.73□□□□□ -1.17
MSH2-201ENST00000233146 A0A0A0MQY5 61 aa7.72□□□□□ -1.17
MSH2-201ENST00000233146 P0C880 135 aa7.72□□□□□ -1.17
MSH2-201ENST00000233146 DNAH10OSP0CZ25 163 aa7.7□□□□□ -1.18
MSH2-201ENST00000233146 KRTAP11-1Q8IUC1 163 aa7.68□□□□□ -1.18
MSH2-201ENST00000233146 IGLV5-52A0A0A0MRZ9 124 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms