RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 KRTAP10-1P60331 282 aa11.52□□□□□ -0.57
SMPD3-201ENST00000219334 C5orf42Q9H799 3197 aa11.52□□□□□ -0.57
SMPD3-201ENST00000219334 CHD6Q8TD26 2715 aa11.5□□□□□ -0.57
SMPD3-201ENST00000219334 Q1T7F1 81 aa11.5□□□□□ -0.57
SMPD3-201ENST00000219334 HTTP42858 3142 aa11.5□□□□□ -0.57
SMPD3-201ENST00000219334 Q8N9P0 234 aaPredicted RBP11.5□□□□□ -0.57
SMPD3-201ENST00000219334 Q8NDZ9 215 aa11.5□□□□□ -0.57
SMPD3-201ENST00000219334 NBEAL1Q6ZS30 2694 aa11.49□□□□□ -0.57
SMPD3-201ENST00000219334 LUZP6Q538Z0 58 aa11.49□□□□□ -0.57
SMPD3-201ENST00000219334 SPINK7P58062 85 aa11.49□□□□□ -0.57
SMPD3-201ENST00000219334 KTN1-AS1Q86SY8 53 aa11.48□□□□□ -0.57
SMPD3-201ENST00000219334 KRTAP10-2P60368 255 aa11.47□□□□□ -0.57
SMPD3-201ENST00000219334 LINC00483Q53H64 154 aa11.47□□□□□ -0.57
SMPD3-201ENST00000219334 LCA10Q71F78 164 aa11.47□□□□□ -0.57
SMPD3-201ENST00000219334 UNC79Q9P2D8 2635 aa11.43□□□□□ -0.58
SMPD3-201ENST00000219334 LINC00472Q9H8W2 130 aa11.43□□□□□ -0.58
SMPD3-201ENST00000219334 Q5W150 140 aa11.42□□□□□ -0.58
SMPD3-201ENST00000219334 R4GN34 69 aa11.41□□□□□ -0.58
SMPD3-201ENST00000219334 DMAC1Q96GE9 116 aa11.4□□□□□ -0.58
SMPD3-201ENST00000219334 BAHCC1Q9P281 2608 aa11.39□□□□□ -0.59
SMPD3-201ENST00000219334 KRTAP26-1Q6PEX3 210 aa11.39□□□□□ -0.59
SMPD3-201ENST00000219334 CHD9Q3L8U1 2897 aa11.37□□□□□ -0.59
SMPD3-201ENST00000219334 NOTCH1P46531 2555 aa11.36□□□□□ -0.59
SMPD3-201ENST00000219334 FP248Q71RG6 208 aaPredicted RBP11.33□□□□□ -0.6
SMPD3-201ENST00000219334 OXTP01178 125 aa11.32□□□□□ -0.6
SMPD3-201ENST00000219334 A0A0C4DFX4 3053 aa11.32□□□□□ -0.6
SMPD3-201ENST00000219334 ZNF292O60281 2723 aa11.31□□□□□ -0.6
SMPD3-201ENST00000219334 Q6ZR54 194 aa11.29□□□□□ -0.6
SMPD3-201ENST00000219334 LINC01558Q9Y6Z2 57 aa11.29□□□□□ -0.6
SMPD3-201ENST00000219334 Q75L30 129 aa11.28□□□□□ -0.6
SMPD3-201ENST00000219334 MGAQ8IWI9 3026 aa11.22□□□□□ -0.61
SMPD3-201ENST00000219334 PANO1I0J062 215 aa11.2□□□□□ -0.62
SMPD3-201ENST00000219334 GCN1Q92616 2671 aaKnown RBP11.19□□□□□ -0.62
SMPD3-201ENST00000219334 MKI67P46013 3256 aaKnown RBP11.19□□□□□ -0.62
SMPD3-201ENST00000219334 TRANK1O15050 2925 aa11.16□□□□□ -0.62
SMPD3-201ENST00000219334 DMBT1Q9UGM3 2413 aaPredicted RBP11.15□□□□□ -0.62
SMPD3-201ENST00000219334 BRCA2P51587 3418 aa11.15□□□□□ -0.62
SMPD3-201ENST00000219334 M0QZ58 72 aa11.15□□□□□ -0.62
SMPD3-201ENST00000219334 STAB2Q8WWQ8 2551 aa11.14□□□□□ -0.63
SMPD3-201ENST00000219334 UBR5O95071 2799 aaPredicted RBP11.1□□□□□ -0.63
SMPD3-201ENST00000219334 IGSF10Q6WRI0 2623 aa11.1□□□□□ -0.63
SMPD3-201ENST00000219334 RANBP2P49792 3224 aaKnown RBP11.1□□□□□ -0.63
SMPD3-201ENST00000219334 A0A087X002 238 aa11.1□□□□□ -0.63
SMPD3-201ENST00000219334 PLAC4Q8WY50 150 aa11.09□□□□□ -0.63
SMPD3-201ENST00000219334 KRTAP4-16G5E9R7 235 aaPredicted RBP11.08□□□□□ -0.64
SMPD3-201ENST00000219334 RPL37P61927 97 aaKnown RBP11.08□□□□□ -0.64
SMPD3-201ENST00000219334 LAMA3Q16787 3333 aa11.01□□□□□ -0.65
SMPD3-201ENST00000219334 DSPP15924 2871 aaKnown RBP11.01□□□□□ -0.65
SMPD3-201ENST00000219334 NSD1Q96L73 2696 aaPredicted RBP11.01□□□□□ -0.65
SMPD3-201ENST00000219334 MAP1AP78559 2803 aaPredicted RBP11□□□□□ -0.65
SMPD3-201ENST00000219334 ADM2Q7Z4H4 148 aa10.98□□□□□ -0.65
SMPD3-201ENST00000219334 H1FX-AS1Q4G0G2 97 aa10.98□□□□□ -0.65
SMPD3-201ENST00000219334 Q5VV11 94 aa10.97□□□□□ -0.65
SMPD3-201ENST00000219334 CFAP54Q96N23 3096 aa10.97□□□□□ -0.65
SMPD3-201ENST00000219334 LAMA2P24043 3122 aaKnown RBP10.95□□□□□ -0.66
SMPD3-201ENST00000219334 Q6ZRN7 208 aaPredicted RBP10.95□□□□□ -0.66
SMPD3-201ENST00000219334 NBEAL2Q6ZNJ1 2754 aa10.95□□□□□ -0.66
SMPD3-201ENST00000219334 RPS29P62273 56 aaKnown RBP10.94□□□□□ -0.66
SMPD3-201ENST00000219334 CYSTM1Q9H1C7 97 aa10.93□□□□□ -0.66
SMPD3-201ENST00000219334 KRTAP21-3Q3LHN1 58 aa10.92□□□□□ -0.66
SMPD3-201ENST00000219334 ITPR2Q14571 2701 aa10.92□□□□□ -0.66
SMPD3-201ENST00000219334 ROMO1P60602 79 aa10.91□□□□□ -0.66
SMPD3-201ENST00000219334 PRAC1Q96KF2 57 aa10.91□□□□□ -0.66
SMPD3-201ENST00000219334 UNC80Q8N2C7 3258 aa10.9□□□□□ -0.66
SMPD3-201ENST00000219334 KRTAP29-1A8MX34 341 aaPredicted RBP10.89□□□□□ -0.67
SMPD3-201ENST00000219334 WDFY4Q6ZS81 3184 aa10.88□□□□□ -0.67
SMPD3-201ENST00000219334 ASB16-AS1Q495Z4 193 aa10.87□□□□□ -0.67
SMPD3-201ENST00000219334 Q5XG85 94 aa10.85□□□□□ -0.67
SMPD3-201ENST00000219334 KRTAP11-1Q8IUC1 163 aa10.83□□□□□ -0.68
SMPD3-201ENST00000219334 FRYQ5TBA9 3013 aa10.82□□□□□ -0.68
SMPD3-201ENST00000219334 NOTCH2NLQ7Z3S9 236 aa10.81□□□□□ -0.68
SMPD3-201ENST00000219334 SPATA8Q6RVD6 105 aa10.8□□□□□ -0.68
SMPD3-201ENST00000219334 A0A0A0MQY5 61 aa10.79□□□□□ -0.68
SMPD3-201ENST00000219334 CDH23Q9H251 3354 aa10.79□□□□□ -0.68
SMPD3-201ENST00000219334 ITPR1Q14643 2758 aa10.74□□□□□ -0.69
SMPD3-201ENST00000219334 KRTAP13-2Q52LG2 175 aa10.73□□□□□ -0.69
SMPD3-201ENST00000219334 PRUNE2Q8WUY3 3088 aa10.72□□□□□ -0.69
SMPD3-201ENST00000219334 A8MUU9 505 aa10.69□□□□□ -0.7
SMPD3-201ENST00000219334 C20orf166-AS1Q96NR2 134 aa10.69□□□□□ -0.7
SMPD3-201ENST00000219334 DNAH14Q0VDD8 3507 aa10.69□□□□□ -0.7
SMPD3-201ENST00000219334 KRTAP7-1Q8IUC3 87 aa10.68□□□□□ -0.7
SMPD3-201ENST00000219334 TRIOO75962 3097 aa10.66□□□□□ -0.7
SMPD3-201ENST00000219334 TENM4Q6N022 2769 aa10.65□□□□□ -0.7
SMPD3-201ENST00000219334 KRTAP13-1Q8IUC0 172 aa10.64□□□□□ -0.71
SMPD3-201ENST00000219334 XIRP2A4UGR9 3374 aa10.6□□□□□ -0.71
SMPD3-201ENST00000219334 REV3LO60673 3130 aa10.6□□□□□ -0.71
SMPD3-201ENST00000219334 KMT2BQ9UMN6 2715 aaPredicted RBP10.59□□□□□ -0.71
SMPD3-201ENST00000219334 HIVEP1P15822 2718 aa10.57□□□□□ -0.72
SMPD3-201ENST00000219334 TACC2O95359 2948 aa10.56□□□□□ -0.72
SMPD3-201ENST00000219334 FLNCQ14315 2725 aa10.54□□□□□ -0.72
SMPD3-201ENST00000219334 VPS13AQ96RL7 3174 aa10.53□□□□□ -0.72
SMPD3-201ENST00000219334 SZT2Q5T011 3432 aa10.52□□□□□ -0.73
SMPD3-201ENST00000219334 LAMA1P25391 3075 aa10.51□□□□□ -0.73
SMPD3-201ENST00000219334 VCANP13611 3396 aa10.51□□□□□ -0.73
SMPD3-201ENST00000219334 UTP20O75691 2785 aaKnown RBP10.47□□□□□ -0.73
SMPD3-201ENST00000219334 CELSR3Q9NYQ7 3312 aa10.46□□□□□ -0.74
SMPD3-201ENST00000219334 A8MU10 97 aa10.44□□□□□ -0.74
SMPD3-201ENST00000219334 ATMQ13315 3056 aa10.35□□□□□ -0.75
SMPD3-201ENST00000219334 COL12A1Q99715 3063 aa10.34□□□□□ -0.75
SMPD3-201ENST00000219334 DMXL2Q8TDJ6 3036 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms