RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 A0A087WSZ3 146 aa8.85□□□□□ -0.99
USH1C-201ENST00000005226 A0A096LNI7 61 aa8.85□□□□□ -0.99
USH1C-201ENST00000005226 LCE6AA0A183 80 aa8.85□□□□□ -0.99
USH1C-201ENST00000005226 A0A1B0GW54 56 aa8.84□□□□□ -0.99
USH1C-201ENST00000005226 HCG22E2RYF7 251 aa8.84□□□□□ -0.99
USH1C-201ENST00000005226 C1orf64Q8NEQ6 169 aa8.84□□□□□ -0.99
USH1C-201ENST00000005226 LYSTQ99698 3801 aa8.84□□□□□ -0.99
USH1C-201ENST00000005226 ZCCHC13Q8WW36 166 aaKnown RBP8.83□□□□□ -1
USH1C-201ENST00000005226 hDV103S1A0JD37 113 aa8.83□□□□□ -1
USH1C-201ENST00000005226 KRTAP11-1Q8IUC1 163 aa8.82□□□□□ -1
USH1C-201ENST00000005226 TENM2Q9NT68 2774 aa8.81□□□□□ -1
USH1C-201ENST00000005226 KRTAP1-5Q9BYS1 174 aa8.81□□□□□ -1
USH1C-201ENST00000005226 CHTF8P0CG12 524 aa8.8□□□□□ -1
USH1C-201ENST00000005226 STAB2Q8WWQ8 2551 aa8.79□□□□□ -1
USH1C-201ENST00000005226 HUWE1Q7Z6Z7 4374 aaKnown RBP8.78□□□□□ -1
USH1C-201ENST00000005226 PHF5AQ7RTV0 110 aaKnown RBP8.78□□□□□ -1
USH1C-201ENST00000005226 DNAH3Q8TD57 4116 aa8.77□□□□□ -1
USH1C-201ENST00000005226 UBE2AP49459 152 aa8.77□□□□□ -1.01
USH1C-201ENST00000005226 COL7A1Q02388 2944 aa8.76□□□□□ -1.01
USH1C-201ENST00000005226 MGAM2Q2M2H8 2515 aa8.76□□□□□ -1.01
USH1C-201ENST00000005226 PSPHP1O15172 72 aa8.75□□□□□ -1.01
USH1C-201ENST00000005226 LINC00208Q96KT6 92 aa8.75□□□□□ -1.01
USH1C-201ENST00000005226 DNAH9Q9NYC9 4486 aa8.75□□□□□ -1.01
USH1C-201ENST00000005226 C16orf90A8MZG2 172 aa8.74□□□□□ -1.01
USH1C-201ENST00000005226 K7EIL1 84 aa8.71□□□□□ -1.01
USH1C-201ENST00000005226 MP68P56378 58 aa8.7□□□□□ -1.02
USH1C-201ENST00000005226 IGLV8-61A0A075B6I0 122 aa8.69□□□□□ -1.02
USH1C-201ENST00000005226 KRTAP29-1A8MX34 341 aaPredicted RBP8.69□□□□□ -1.02
USH1C-201ENST00000005226 CNBPP62633 177 aaKnown RBP8.69□□□□□ -1.02
USH1C-201ENST00000005226 CASC2Q6XLA1 102 aa8.69□□□□□ -1.02
USH1C-201ENST00000005226 TRAV22A0A0B4J277 110 aa8.68□□□□□ -1.02
USH1C-201ENST00000005226 H0Y9P7 68 aa8.67□□□□□ -1.02
USH1C-201ENST00000005226 Q1T7F1 81 aa8.67□□□□□ -1.02
USH1C-201ENST00000005226 CYP4F30PQ9H0H9 118 aa8.67□□□□□ -1.02
USH1C-201ENST00000005226 PRR15Q8IV56 129 aa8.66□□□□□ -1.02
USH1C-201ENST00000005226 PANO1I0J062 215 aa8.65□□□□□ -1.02
USH1C-201ENST00000005226 C1orf195Q5TG92 126 aa8.65□□□□□ -1.03
USH1C-201ENST00000005226 UBE2DNLQ8IWF7 75 aa8.65□□□□□ -1.03
USH1C-201ENST00000005226 A8MUN3 132 aa8.64□□□□□ -1.03
USH1C-201ENST00000005226 H0Y9J4 135 aa8.64□□□□□ -1.03
USH1C-201ENST00000005226 LINC00472Q9H8W2 130 aa8.64□□□□□ -1.03
USH1C-201ENST00000005226 B9D2Q9BPU9 175 aa8.64□□□□□ -1.03
USH1C-201ENST00000005226 DNAH7Q8WXX0 4024 aa8.63□□□□□ -1.03
USH1C-201ENST00000005226 NDUFB1O75438 58 aa8.63□□□□□ -1.03
USH1C-201ENST00000005226 A8MU10 97 aa8.62□□□□□ -1.03
USH1C-201ENST00000005226 A8MWP4 228 aa8.62□□□□□ -1.03
USH1C-201ENST00000005226 IGLV9-49A0A0B4J1Y8 123 aa8.6□□□□□ -1.03
USH1C-201ENST00000005226 SPRR1BP22528 89 aa8.59□□□□□ -1.03
USH1C-201ENST00000005226 MMP24-AS1A0A0U1RRL7 71 aa8.57□□□□□ -1.04
USH1C-201ENST00000005226 PCOTHQ58A44 107 aa8.56□□□□□ -1.04
USH1C-201ENST00000005226 C9orf163Q8N9P6 203 aa8.56□□□□□ -1.04
USH1C-201ENST00000005226 APLNQ9ULZ1 77 aa8.56□□□□□ -1.04
USH1C-201ENST00000005226 Q5VV11 94 aa8.53□□□□□ -1.04
USH1C-201ENST00000005226 PLECQ15149 4684 aaKnown RBP8.53□□□□□ -1.04
USH1C-201ENST00000005226 ANAPC11Q9NYG5 84 aa8.52□□□□□ -1.04
USH1C-201ENST00000005226 Q8N9P0 234 aaPredicted RBP8.52□□□□□ -1.05
USH1C-201ENST00000005226 C14orf177Q52M58 125 aa8.52□□□□□ -1.05
USH1C-201ENST00000005226 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.52□□□□□ -1.05
USH1C-201ENST00000005226 SPANXA2-OT1Q8N9U9 137 aa8.51□□□□□ -1.05
USH1C-201ENST00000005226 Q96NJ1 140 aa8.51□□□□□ -1.05
USH1C-201ENST00000005226 KRTAP13-1Q8IUC0 172 aa8.5□□□□□ -1.05
USH1C-201ENST00000005226 PRR15LQ9BU68 103 aa8.5□□□□□ -1.05
USH1C-201ENST00000005226 H3BPC8 53 aa8.49□□□□□ -1.05
USH1C-201ENST00000005226 CHKB-CPT1BH3BT56 60 aa8.49□□□□□ -1.05
USH1C-201ENST00000005226 MOBPQ13875 183 aa8.49□□□□□ -1.05
USH1C-201ENST00000005226 V9GYY9 64 aa8.48□□□□□ -1.05
USH1C-201ENST00000005226 IGHV6-1A0A0B4J1U7 121 aa8.48□□□□□ -1.05
USH1C-201ENST00000005226 NDUFS5O43920 106 aa8.48□□□□□ -1.05
USH1C-201ENST00000005226 COA5Q86WW8 74 aa8.47□□□□□ -1.05
USH1C-201ENST00000005226 CD164Q04900 197 aa8.47□□□□□ -1.05
USH1C-201ENST00000005226 NBDYA0A0U1RRE5 68 aa8.46□□□□□ -1.06
USH1C-201ENST00000005226 A0A087X002 238 aa8.45□□□□□ -1.06
USH1C-201ENST00000005226 NOTCH2NLQ7Z3S9 236 aa8.45□□□□□ -1.06
USH1C-201ENST00000005226 C8orf17Q9NRJ1 99 aa8.45□□□□□ -1.06
USH1C-201ENST00000005226 IGLV7-46A0A075B6I9 117 aa8.44□□□□□ -1.06
USH1C-201ENST00000005226 Q6ZRN7 208 aaPredicted RBP8.44□□□□□ -1.06
USH1C-201ENST00000005226 MDFIQ99750 246 aa8.44□□□□□ -1.06
USH1C-201ENST00000005226 PMAIP1Q13794 54 aa8.42□□□□□ -1.06
USH1C-201ENST00000005226 SPACA4Q8TDM5 124 aa8.41□□□□□ -1.06
USH1C-201ENST00000005226 LIMD2Q9BT23 127 aa8.41□□□□□ -1.06
USH1C-201ENST00000005226 FRAS1Q86XX4 4008 aa8.4□□□□□ -1.06
USH1C-201ENST00000005226 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
USH1C-201ENST00000005226 SPAG11AQ6PDA7 123 aa8.39□□□□□ -1.07
USH1C-201ENST00000005226 DNAH8Q96JB1 4490 aa8.39□□□□□ -1.07
USH1C-201ENST00000005226 PSORS1C2Q9UIG4 136 aa8.39□□□□□ -1.07
USH1C-201ENST00000005226 DYNC2H1Q8NCM8 4307 aaKnown RBP8.39□□□□□ -1.07
USH1C-201ENST00000005226 SPTSSBQ8NFR3 76 aa8.38□□□□□ -1.07
USH1C-201ENST00000005226 A0A1B0GVX0 72 aa8.38□□□□□ -1.07
USH1C-201ENST00000005226 SPINK6Q6UWN8 80 aa8.38□□□□□ -1.07
USH1C-201ENST00000005226 WWC2-AS2Q96NR7 200 aa8.38□□□□□ -1.07
USH1C-201ENST00000005226 LCA10Q71F78 164 aa8.38□□□□□ -1.07
USH1C-201ENST00000005226 A6NED7 52 aa8.36□□□□□ -1.07
USH1C-201ENST00000005226 TP53AIP1Q9HCN2 124 aa8.36□□□□□ -1.07
USH1C-201ENST00000005226 CDK2AP2O75956 126 aa8.36□□□□□ -1.07
USH1C-201ENST00000005226 STARD9Q9P2P6 4700 aa8.35□□□□□ -1.07
USH1C-201ENST00000005226 SEC61GP60059 68 aa8.35□□□□□ -1.07
USH1C-201ENST00000005226 LINC00483Q53H64 154 aa8.35□□□□□ -1.07
USH1C-201ENST00000005226 Q6ZR54 194 aa8.35□□□□□ -1.07
USH1C-201ENST00000005226 MRPL34Q9BQ48 92 aaKnown RBP8.34□□□□□ -1.07
USH1C-201ENST00000005226 A0A087WTM6 91 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms