RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PKHD1L1Q86WI1 4243 aa6.11□□□□□ -1.43
CLN3-261ENST00000637686 M0QXV9 152 aa6.11□□□□□ -1.43
CLN3-261ENST00000637686 S100A7L2Q5SY68 101 aa6.11□□□□□ -1.43
CLN3-261ENST00000637686 NCR3O14931 201 aa6.1□□□□□ -1.43
CLN3-261ENST00000637686 RPL13AP40429 203 aaKnown RBP6.1□□□□□ -1.43
CLN3-261ENST00000637686 RPL28P46779 137 aaKnown RBP6.1□□□□□ -1.43
CLN3-261ENST00000637686 KCNQ1DNQ9H478 68 aa6.1□□□□□ -1.43
CLN3-261ENST00000637686 MYCBP2O75592 4640 aa6.1□□□□□ -1.43
CLN3-261ENST00000637686 IGLV1-50A0A075B6I6 118 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 TRBV7-6A0A0J9YX20 115 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 TRBV10-3A0A0K0K1G6 114 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 C9orf118A6NHY6 69 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 K7ERJ3 54 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 PRYO14603 147 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 TAX1BP3O14907 124 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 LYRM7Q5U5X0 104 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 OR13C6PQ8NH95 151 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 PSORS1C2Q9UIG4 136 aa6.09□□□□□ -1.43
CLN3-261ENST00000637686 TSPAN13O95857 204 aa6.08□□□□□ -1.44
CLN3-261ENST00000637686 KRTAP11-1Q8IUC1 163 aa6.08□□□□□ -1.44
CLN3-261ENST00000637686 LINC00167Q96N53 147 aa6.08□□□□□ -1.44
CLN3-261ENST00000637686 TRAV23DV6A0A075B6W5 121 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 KRTAP29-1A8MX34 341 aaPredicted RBP6.07□□□□□ -1.44
CLN3-261ENST00000637686 J3QL48 77 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 COX6CP09669 75 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 SPRR1AP35321 89 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 UBE2BP63146 152 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 C1orf137Q5JT78 98 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 SMIM11BQ8TCY0 68 aa6.07□□□□□ -1.44
CLN3-261ENST00000637686 LRP1Q07954 4544 aaKnown RBP6.06□□□□□ -1.44
CLN3-261ENST00000637686 H0YGX0 51 aa6.06□□□□□ -1.44
CLN3-261ENST00000637686 Q1RN00 199 aa6.06□□□□□ -1.44
CLN3-261ENST00000637686 ZNF73O43830 326 aaPredicted RBP6.05□□□□□ -1.44
CLN3-261ENST00000637686 OXTP01178 125 aa6.05□□□□□ -1.44
CLN3-261ENST00000637686 VAMP3Q15836 100 aa6.05□□□□□ -1.44
CLN3-261ENST00000637686 SPINK6Q6UWN8 80 aa6.05□□□□□ -1.44
CLN3-261ENST00000637686 DIRC1Q969H9 104 aa6.05□□□□□ -1.44
CLN3-261ENST00000637686 FAT3Q8TDW7 4589 aa6.05□□□□□ -1.44
CLN3-261ENST00000637686 A0A1B0GX51 115 aa6.04□□□□□ -1.44
CLN3-261ENST00000637686 KRTAP4-16G5E9R7 235 aaPredicted RBP6.04□□□□□ -1.44
CLN3-261ENST00000637686 TRBV20-1A0A075B6N2 111 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 A0A1W2PPM0 123 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 GAGE10A6NGK3 116 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 H0Y9J4 135 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 H7C2G1 150 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 TRIAP1O43715 76 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 IGLV7-43P04211 117 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 PSMB2P49721 201 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 C6orf99Q4VX62 202 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 REG3GQ6UW15 175 aa6.03□□□□□ -1.44
CLN3-261ENST00000637686 RPL37AP8A6NKH3 93 aa6.02□□□□□ -1.45
CLN3-261ENST00000637686 H3BUT2 72 aa6.02□□□□□ -1.45
CLN3-261ENST00000637686 FABP2P12104 132 aa6.02□□□□□ -1.45
CLN3-261ENST00000637686 ELOF1P60002 83 aaKnown RBP6.02□□□□□ -1.45
CLN3-261ENST00000637686 SNCGO76070 127 aa6.01□□□□□ -1.45
CLN3-261ENST00000637686 ETDCA0A1B0GVM5 59 aa6□□□□□ -1.45
CLN3-261ENST00000637686 BCE1O60756 84 aa6□□□□□ -1.45
CLN3-261ENST00000637686 SCGB1C2P0DMR2 95 aa6□□□□□ -1.45
CLN3-261ENST00000637686 COX7BP24311 80 aa6□□□□□ -1.45
CLN3-261ENST00000637686 Q6ZRX8 168 aa6□□□□□ -1.45
CLN3-261ENST00000637686 DMBT1Q9UGM3 2413 aaPredicted RBP6□□□□□ -1.45
CLN3-261ENST00000637686 UBR4Q5T4S7 5183 aa5.99□□□□□ -1.45
CLN3-261ENST00000637686 B5MCH6 92 aa5.99□□□□□ -1.45
CLN3-261ENST00000637686 LST1O00453 97 aa5.99□□□□□ -1.45
CLN3-261ENST00000637686 TRACP01848 142 aa5.99□□□□□ -1.45
CLN3-261ENST00000637686 DHRS4-AS1Q9P1J3 65 aa5.99□□□□□ -1.45
CLN3-261ENST00000637686 SLC25A20O43772 301 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 MT1HL1P0DM35 61 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 ATXN8Q156A1 80 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 LINC00575Q6W349 94 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 KRTAP13-1Q8IUC0 172 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 LINC01600Q96MT4 127 aa5.98□□□□□ -1.45
CLN3-261ENST00000637686 H3BQ85 93 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 ZNF861PO60384 105 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 GHRHP01286 108 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 GTF2H5Q6ZYL4 71 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 SPCS1Q9Y6A9 102 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 HERC1Q15751 4861 aa5.97□□□□□ -1.45
CLN3-261ENST00000637686 hADV29S1A0JD25 119 aa5.96□□□□□ -1.46
CLN3-261ENST00000637686 K7EP34 96 aa5.96□□□□□ -1.46
CLN3-261ENST00000637686 TCL1BO95988 128 aa5.96□□□□□ -1.46
CLN3-261ENST00000637686 OCIAD2Q56VL3 154 aa5.96□□□□□ -1.46
CLN3-261ENST00000637686 NAA38Q9BRA0 125 aaKnown RBP5.96□□□□□ -1.46
CLN3-261ENST00000637686 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.95□□□□□ -1.46
CLN3-261ENST00000637686 FAM19A1Q7Z5A9 133 aa5.95□□□□□ -1.46
CLN3-261ENST00000637686 FAM218AQ96MZ4 157 aa5.95□□□□□ -1.46
CLN3-261ENST00000637686 DNAL4O96015 105 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 UBE2AP49459 152 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 PPDPFLQ8WWR9 84 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 CLEC2BQ92478 149 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 Q9BRP9 147 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 TNXBP22105 4242 aa5.94□□□□□ -1.46
CLN3-261ENST00000637686 KRTAP10-8P60410 259 aa5.93□□□□□ -1.46
CLN3-261ENST00000637686 SMCR5Q8TEV8 140 aa5.93□□□□□ -1.46
CLN3-261ENST00000637686 PRLHP81277 87 aa5.92□□□□□ -1.46
CLN3-261ENST00000637686 IGLV5-48A0A075B6I7 105 aa5.91□□□□□ -1.46
CLN3-261ENST00000637686 A0A1B0GV90 55 aa5.91□□□□□ -1.46
CLN3-261ENST00000637686 KRTAP1-4P0C5Y4 121 aa5.91□□□□□ -1.46
CLN3-261ENST00000637686 UBE2V1Q13404 147 aa5.91□□□□□ -1.46
CLN3-261ENST00000637686 PRR26Q8N8Z3 221 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms