RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 IGKV2-28A0A075B6P5 120 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 H3BRM9 83 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 IGKV2D-28P01615 120 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 C6orf226Q5I0X4 101 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 LINC01561Q8N1V8 128 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 Q8NBF4 154 aa8.01□□□□□ -1.13
CLN3-249ENST00000636685 TAX1BP3O14907 124 aa8□□□□□ -1.13
CLN3-249ENST00000636685 FAM19A1Q7Z5A9 133 aa8□□□□□ -1.13
CLN3-249ENST00000636685 VCX2Q9H322 139 aa8□□□□□ -1.13
CLN3-249ENST00000636685 IGLV8-61A0A075B6I0 122 aa7.99□□□□□ -1.13
CLN3-249ENST00000636685 MYMXA0A1B0GTQ4 84 aa7.99□□□□□ -1.13
CLN3-249ENST00000636685 C11orf86A6NJI1 115 aa7.99□□□□□ -1.13
CLN3-249ENST00000636685 IGLV5-37A0A075B6J1 123 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 SMIM13P0DJ93 91 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 UBE2V1Q13404 147 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 PCOTHQ58A44 107 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 Q8IZM0 81 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 NKAPP1Q8N9T2 125 aa7.98□□□□□ -1.13
CLN3-249ENST00000636685 IGLV4-3A0A075B6K6 122 aa7.97□□□□□ -1.13
CLN3-249ENST00000636685 NDUFA12Q9UI09 145 aa7.97□□□□□ -1.13
CLN3-249ENST00000636685 TMEM238C9JI98 176 aa7.96□□□□□ -1.14
CLN3-249ENST00000636685 SPINK1P00995 79 aa7.96□□□□□ -1.14
CLN3-249ENST00000636685 VAMP3Q15836 100 aa7.96□□□□□ -1.14
CLN3-249ENST00000636685 CEND1Q8N111 149 aa7.96□□□□□ -1.14
CLN3-249ENST00000636685 AMELXQ99217 191 aa7.96□□□□□ -1.14
CLN3-249ENST00000636685 C9orf118A6NHY6 69 aa7.95□□□□□ -1.14
CLN3-249ENST00000636685 TMEM170BQ5T4T1 132 aa7.95□□□□□ -1.14
CLN3-249ENST00000636685 HIST1H4GQ99525 98 aa7.95□□□□□ -1.14
CLN3-249ENST00000636685 TMEM126AQ9H061 195 aa7.95□□□□□ -1.14
CLN3-249ENST00000636685 LEPROTO15243 131 aa7.94□□□□□ -1.14
CLN3-249ENST00000636685 SPRR4Q96PI1 79 aa7.94□□□□□ -1.14
CLN3-249ENST00000636685 TTTY13Q9BZ97 58 aa7.94□□□□□ -1.14
CLN3-249ENST00000636685 ZNF815PA8K554 130 aa7.93□□□□□ -1.14
CLN3-249ENST00000636685 Q8N377 158 aa7.93□□□□□ -1.14
CLN3-249ENST00000636685 HIGD2AQ9BW72 106 aa7.93□□□□□ -1.14
CLN3-249ENST00000636685 TMEM223A0PJW6 202 aa7.92□□□□□ -1.14
CLN3-249ENST00000636685 LGALS3P17931 250 aaKnown RBP7.92□□□□□ -1.14
CLN3-249ENST00000636685 SCGB1D4Q6XE38 83 aa7.92□□□□□ -1.14
CLN3-249ENST00000636685 Q6ZVH6 145 aa7.92□□□□□ -1.14
CLN3-249ENST00000636685 GTF2H5Q6ZYL4 71 aa7.92□□□□□ -1.14
CLN3-249ENST00000636685 TINCRA0A1B0GVN0 87 aa7.91□□□□□ -1.14
CLN3-249ENST00000636685 J3QQQ9 107 aa7.91□□□□□ -1.14
CLN3-249ENST00000636685 M0R378 163 aa7.91□□□□□ -1.14
CLN3-249ENST00000636685 TMEM238LA0A1B0GVL6 79 aa7.9□□□□□ -1.14
CLN3-249ENST00000636685 A6NJY4 79 aa7.9□□□□□ -1.14
CLN3-249ENST00000636685 ZNF22P17026 224 aaPredicted RBP7.9□□□□□ -1.14
CLN3-249ENST00000636685 SPANXB1Q9NS25 103 aaPredicted RBP7.9□□□□□ -1.14
CLN3-249ENST00000636685 KRTAP4-16G5E9R7 235 aaPredicted RBP7.89□□□□□ -1.15
CLN3-249ENST00000636685 FXYD2P54710 66 aa7.89□□□□□ -1.15
CLN3-249ENST00000636685 A0A1B0GWB2 263 aa7.88□□□□□ -1.15
CLN3-249ENST00000636685 H3BUT2 72 aa7.88□□□□□ -1.15
CLN3-249ENST00000636685 COX6B2Q6YFQ2 88 aa7.88□□□□□ -1.15
CLN3-249ENST00000636685 RAB37Q96AX2 223 aa7.88□□□□□ -1.15
CLN3-249ENST00000636685 CDKN2A-AS1Q9UH64 79 aa7.88□□□□□ -1.15
CLN3-249ENST00000636685 SYNE2Q8WXH0 6885 aaKnown RBP7.87□□□□□ -1.15
CLN3-249ENST00000636685 A0A1W2PPM0 123 aa7.87□□□□□ -1.15
CLN3-249ENST00000636685 FABP2P12104 132 aa7.87□□□□□ -1.15
CLN3-249ENST00000636685 CXCL5P42830 114 aa7.87□□□□□ -1.15
CLN3-249ENST00000636685 FAM19A3Q7Z5A8 133 aa7.87□□□□□ -1.15
CLN3-249ENST00000636685 GEMIN7Q9H840 131 aaKnown RBP7.87□□□□□ -1.15
CLN3-249ENST00000636685 NHP2Q9NX24 153 aaKnown RBP7.87□□□□□ -1.15
CLN3-249ENST00000636685 MACF1Q9UPN3 7388 aaKnown RBP7.86□□□□□ -1.15
CLN3-249ENST00000636685 SLC25A20O43772 301 aa7.86□□□□□ -1.15
CLN3-249ENST00000636685 HERVK_113P63121 156 aa7.85□□□□□ -1.15
CLN3-249ENST00000636685 K7EP34 96 aa7.84□□□□□ -1.15
CLN3-249ENST00000636685 VPREB1P12018 145 aa7.84□□□□□ -1.15
CLN3-249ENST00000636685 RPS29P62273 56 aaKnown RBP7.84□□□□□ -1.15
CLN3-249ENST00000636685 ZNF706Q9Y5V0 76 aaPredicted RBP7.84□□□□□ -1.15
CLN3-249ENST00000636685 IGLV5-45A0A087WSX0 123 aa7.83□□□□□ -1.16
CLN3-249ENST00000636685 TSPEAR-AS2P59090 65 aa7.83□□□□□ -1.16
CLN3-249ENST00000636685 RPL24P83731 157 aaKnown RBP7.82□□□□□ -1.16
CLN3-249ENST00000636685 COX7B2Q8TF08 81 aa7.82□□□□□ -1.16
CLN3-249ENST00000636685 SPCS1Q9Y6A9 102 aa7.82□□□□□ -1.16
CLN3-249ENST00000636685 A0A0J9YXY3 114 aa7.81□□□□□ -1.16
CLN3-249ENST00000636685 TIMM17BO60830 172 aa7.81□□□□□ -1.16
CLN3-249ENST00000636685 KRTAP19-1Q8IUB9 90 aa7.81□□□□□ -1.16
CLN3-249ENST00000636685 C9orf92A6NGG3 77 aa7.8□□□□□ -1.16
CLN3-249ENST00000636685 SMIM1B2RUZ4 78 aa7.8□□□□□ -1.16
CLN3-249ENST00000636685 MOBPQ13875 183 aa7.8□□□□□ -1.16
CLN3-249ENST00000636685 K7ERJ3 54 aa7.79□□□□□ -1.16
CLN3-249ENST00000636685 SPINK8P0C7L1 97 aa7.79□□□□□ -1.16
CLN3-249ENST00000636685 LYRM7Q5U5X0 104 aa7.79□□□□□ -1.16
CLN3-249ENST00000636685 Q8NDZ9 215 aa7.79□□□□□ -1.16
CLN3-249ENST00000636685 IGLV9-49A0A0B4J1Y8 123 aa7.78□□□□□ -1.16
CLN3-249ENST00000636685 IFITM1P13164 125 aa7.78□□□□□ -1.16
CLN3-249ENST00000636685 NAA38Q9BRA0 125 aaKnown RBP7.78□□□□□ -1.16
CLN3-249ENST00000636685 SPANXDQ9BXN6 97 aa7.78□□□□□ -1.16
CLN3-249ENST00000636685 SPANXCQ9NY87 97 aa7.78□□□□□ -1.16
CLN3-249ENST00000636685 IGLV5-39A0A0G2JS06 123 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 CFC1P0CG37 223 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 PFN2P35080 140 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 MUSTN1Q8IVN3 82 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 SMCR5Q8TEV8 140 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 COPS9Q8WXC6 57 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 PRO1854Q9UHT4 67 aa7.77□□□□□ -1.17
CLN3-249ENST00000636685 A0A0B4J2C4 111 aa7.76□□□□□ -1.17
CLN3-249ENST00000636685 F8W1H4 67 aa7.76□□□□□ -1.17
CLN3-249ENST00000636685 LINC00483Q53H64 154 aa7.76□□□□□ -1.17
CLN3-249ENST00000636685 SND1-IT1Q9HBX3 110 aa7.76□□□□□ -1.17
CLN3-249ENST00000636685 HERV-K104P63124 156 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms